Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002052

Physical Location & Seq

Genomic Coordinates Forward (+)

23869696 .. 23870441

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g27730.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTTTTGCTTAAGACGATTAAACTTGAGTAATAATAGAATTGATTTATTTGCTTTAGCATATGTCAAGTATAATTTGGCTTTACAACAGAGAAGTAAGAAAAAGAGGGAGAAGTATGATCGATCGATTGTTGTGGAAGAAATTGCCTCCGATGATGAATGGATAACGGAGATAGAAGATCCTGTTCTTCCTGAAGATCCAACATGGCTTAAGGATGAGTTATTGTATAATGTTGAGGTCGTAAGGAATGTGCCACCCCCGGTTTATGAAGGTGGCCCATACATTCAAGAGCCTAGAGAGTCATCTCCTCCTCCTCTTCGTGAGCCTACTCCTCCTCGTGAGCCTACTCCTCCTCGTGAGCCTACTCAACCTCGGGGTCCTATTACATACAAAAGAAAACGAGGTAATGAAGAATCCTCAAGTCGAAGAAATGTGGAGTATGATCAGGAAGAATCTTTTGATGAATTGATGACATACCCTACAAGGTCATCTAGAGTTGGCAATGAAGAGGATGATATCTTTGTTTGTATTTTGATTTCTATGAAGAGGATGTGGATGAATGATTGTTTTCTTTGTTTGTATTACCTTTTGAATGATGAATTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF659 Dimer_Tnp_hAT

Protein Analysis

203

Amino Acids

23.9

Weight (kDa)

4.83

Isoelectric Point (pI)

78.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36095 AT5G33406
fragaria_vesca	FvH4_2g19761 FvH4_2g31910 FvH4_3g32805 FvH4_3g33921 FvH4_3g33922 FvH4_4g11993 FvH4_5g36511 FvH4_6g16931 FvH4_6g16931
malus_domestica	MD01G1106300.v1.1 MD01G1106700.v1.1 MD08G1077600.v1.1
pyrus_communis	pycom01g13300 pycom06g05900 pycom12g14200 pycom13g27730 pycom16g16790
rosa_chinensis	RchiOBHm_Chr1g0361961 RchiOBHm_Chr1g0361981 RchiOBHm_Chr2g0141951 RchiOBHm_Chr7g0218361
rosa_multiflora	Rmu_co8147950.1_g000001 Rmu_co8356159.1_g000001 Rmu_sc0000117.1_g000022 Rmu_sc0007718.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097000 Rroxscaffold_2G00126330 Rroxscaffold_4G00304630 Rroxscaffold_5G00366570 Rroxscaffold_5G00366580
rosa_rugosa	Rorug03G0268800 Rorug03G0268900 Rorug05G0477700 Rorug05G0477800 RorugPtG0003500.1
rosa_samantha	Rh1AG259100 Rh4AG027200 Rh7CG313700
rosa_wichuraiana	Rw0G004680 Rw1G026970 Rw4G019360 Rw6G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	173, 191
AcsI	RAATTY	1 cut(s)	599
AcuI	CTGAAG	1 cut(s)	213
AflII	CTTAAG	2 cut(s)	10, 209
AgsI	TTSAA	2 cut(s)	287, 592
AlwI	GGATC	2 cut(s)	173, 191
Ama87I	CYCGRG	1 cut(s)	372
AoxI	GGCC	1 cut(s)	274
ApoI	RAATTY	1 cut(s)	599
AspS9I	GGNCC	2 cut(s)	275, 377
AsuC2I	CCSGG	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	372
AvaII	GGWCC	1 cut(s)	377
BauI	CACGAG	2 cut(s)	336, 354
BclI	TGATCA	1 cut(s)	442
BcnI	CCSGG	1 cut(s)	260
BfaI	CTAG	2 cut(s)	294, 492
BfrI	CTTAAG	2 cut(s)	10, 209
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	377
BmeT110I	CYCGRG	1 cut(s)	372
BmgT120I	GGNCC	2 cut(s)	275, 377
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	1 cut(s)	260
BpuEI	CTTGAG	2 cut(s)	46, 403
BpuMI	CCSGG	1 cut(s)	260
Bsa29I	ATCGAT	2 cut(s)	121, 125
BsaJI	CCNNGG	2 cut(s)	258, 371
Bse3DI	GCAATG	1 cut(s)	508
BseCI	ATCGAT	2 cut(s)	121, 125
BseDI	CCNNGG	2 cut(s)	258, 371
BseGI	GGATG	4 cut(s)	220, 517, 555, 561
BseMI	GCAATG	1 cut(s)	508
BseRI	GAGGAG	7 cut(s)	297, 300, 303, 321, 324, 339, 342
Bsh1285I	CGRYCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	276
BshVI	ATCGAT	2 cut(s)	121, 125
BsiEI	CGRYCG	1 cut(s)	125
BsiHKCI	CYCGRG	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	260
BsnI	GGCC	1 cut(s)	276
BsoBI	CYCGRG	1 cut(s)	372
Bsp143I	GATC	5 cut(s)	118, 122, 178, 196, 442
BspANI	GGCC	1 cut(s)	276
BspDI	ATCGAT	2 cut(s)	121, 125
BspLI	GGNNCC	1 cut(s)	378
BspPI	GGATC	2 cut(s)	173, 191
BspTI	CTTAAG	2 cut(s)	10, 209
BsrDI	GCAATG	1 cut(s)	508
BssECI	CCNNGG	2 cut(s)	258, 371
BssMI	GATC	5 cut(s)	118, 122, 178, 196, 442
BssSI	CACGAG	2 cut(s)	336, 354
Bst2BI	CACGAG	2 cut(s)	336, 354
Bst6I	CTCTTC	3 cut(s)	321, 501, 539
BstAFI	CTTAAG	2 cut(s)	10, 209
BstF5I	GGATG	4 cut(s)	220, 517, 555, 561
BstKTI	GATC	5 cut(s)	121, 125, 181, 199, 445
BstMBI	GATC	5 cut(s)	118, 122, 178, 196, 442
BstMCI	CGRYCG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	258
BstX2I	RGATCY	2 cut(s)	178, 196
BstYI	RGATCY	2 cut(s)	178, 196
Bsu15I	ATCGAT	2 cut(s)	121, 125
BsuRI	GGCC	1 cut(s)	276
BsuTUI	ATCGAT	2 cut(s)	121, 125
BtsCI	GGATG	4 cut(s)	220, 517, 555, 561
Cfr13I	GGNCC	2 cut(s)	275, 377
ClaI	ATCGAT	2 cut(s)	121, 125
CviAII	CATG	1 cut(s)	204
CviJI	RGCY	7 cut(s)	80, 208, 276, 292, 325, 343, 361
CviKI_1	RGCY	7 cut(s)	80, 208, 276, 292, 325, 343, 361
DpnI	GATC	5 cut(s)	120, 124, 180, 198, 444
DpnII	GATC	5 cut(s)	118, 122, 178, 196, 442
Eam1104I	CTCTTC	3 cut(s)	321, 501, 539
EarI	CTCTTC	3 cut(s)	321, 501, 539
Eco32I	GATATC	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	213
Eco88I	CYCGRG	1 cut(s)	372
EcoO109I	RGGNCCY	1 cut(s)	377
EcoRV	GATATC	1 cut(s)	517
FaeI	CATG	1 cut(s)	207
FatI	CATG	1 cut(s)	203
FauNDI	CATATG	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	442
FokI	GGATG	4 cut(s)	227, 524, 562, 568
FspBI	CTAG	2 cut(s)	294, 492
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	1 cut(s)	260
Hin1II	CATG	1 cut(s)	207
HinfI	GANTC	3 cut(s)	299, 413, 452
HpaII	CCGG	1 cut(s)	260
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	7 cut(s)	191, 287, 320, 338, 356, 446, 492
HpyAV	CCTTC	1 cut(s)	263
Hsp92II	CATG	1 cut(s)	207
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	5 cut(s)	118, 122, 178, 196, 442
LpnPI	CCDG	4 cut(s)	195, 204, 273, 431
MaeI	CTAG	2 cut(s)	294, 492
MalI	GATC	5 cut(s)	120, 124, 180, 198, 444
MboI	GATC	5 cut(s)	118, 122, 178, 196, 442
MflI	RGATCY	2 cut(s)	178, 196
MluCI	AATT	5 cut(s)	39, 73, 141, 464, 599
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	224
MseI	TTAA	3 cut(s)	11, 20, 210
MspCI	CTTAAG	2 cut(s)	10, 209
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	260
NciI	CCSGG	1 cut(s)	260
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	5 cut(s)	118, 122, 178, 196, 442
NlaIII	CATG	1 cut(s)	207
NlaIV	GGNNCC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	413, 452
Ple19I	CGATCG	1 cut(s)	125
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PpuMI	RGGWCCY	1 cut(s)	377
Psp5II	RGGWCCY	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	2 cut(s)	275, 377
PspPPI	RGGWCCY	1 cut(s)	377
PsuI	RGATCY	2 cut(s)	178, 196
PvuI	CGATCG	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	11, 20, 210
Sau3AI	GATC	5 cut(s)	118, 122, 178, 196, 442
Sau96I	GGNCC	2 cut(s)	275, 377
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	260
SetI	ASST	6 cut(s)	240, 274, 373, 406, 488, 588
SinI	GGWCC	1 cut(s)	377
SmlI	CTYRAG	4 cut(s)	10, 25, 209, 418
SmoI	CTYRAG	4 cut(s)	10, 25, 209, 418
Sse9I	AATT	5 cut(s)	39, 73, 141, 464, 599
SspMI	CTAG	2 cut(s)	294, 492
StyD4I	CCNGG	1 cut(s)	258
TaqI	TCGA	3 cut(s)	121, 125, 424
TasI	AATT	5 cut(s)	39, 73, 141, 464, 599
TfiI	GAWTC	2 cut(s)	413, 452
Tru1I	TTAA	3 cut(s)	11, 20, 210
Tru9I	TTAA	3 cut(s)	11, 20, 210
TspDTI	ATGAA	7 cut(s)	171, 282, 423, 477, 519, 557, 572
TspGWI	ACGGA	1 cut(s)	182
Vha464I	CTTAAG	2 cut(s)	10, 209
VpaK11BI	GGWCC	1 cut(s)	377
XapI	RAATTY	1 cut(s)	599
XbaI	TCTAGA	1 cut(s)	491
XspI	CTAG	2 cut(s)	294, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.