Rroxscaffold_2G00097000

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002052
Physical Location & Seq
Forward (+)
18311748 .. 18315128
3381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00097000.1

Sequence Viewer

Length: 1098 bp
ATGATGTTAGAGCACAAAAAAGATTGGAGCCATTATGGATGCACAATTATGTCGGATGGTTGGACGGATGGCAAAAGTAGGGTTATACTAAATTTTTTAGTAAATAGCCCTAGAGGTACATGGTTTTTGAAATCGGTTGATGCATCGGATACAATTAAAAATGGGGAGTTGATGCTCAATTATTTGGATAGTGTTGTGGAGGAGGTAGGGGAGGAGAATGTGGTCCAAATAGTTACCGACAATGCTTCTAATTATAAGTGGGCGGGAAAGGAACTTATGAAGCATAGAAGCAAATTGTGGTGGACTCCATGTGCGGCTCATTGCATTGACTTGATGTTGGAGGATATAAGCAAGTTGAAAGTCTTTGAAACTACCATTCAAAGAGCTAAGCAAATTGTGAAGTTTATTTATGGGCACACACAAGTTCTTTCCATTATGAGAAAATTCACCGAGAACAAGGAGATTATTCGTCCGGCGGTTACAAGGTTTGCCACATCTTTTCTCTCTCTTCAAAGTTTATATAAGCAAAAGGAAGCTCTCATTAGTATGTTTTCATCTAAAGATTGGAATGAATGTGGATGCACAAAACATAAAGATGCAAATGATGTGAGGAAGTGGATACTTCATGATGGAAATTTTTGGAACCATGTTGCTTATTGCATAAAAAGTGTTCTACCACTTGTTTGTGTTTTGAGAGAGGTTGATTCGGAAGTGAGACCCGCTATGGGATTTATCTATGAGTTGATGGATGCTGCAAAAGAAAAGATAGCTAAGAATCTTGGAAATGTGGAAGCAAAGTATGGTCCAATTTGGAGGAGAATAGATAATAGATGGAGTCCACAACTTCATCAACCATTGCATGCAGCGGGTTATTACTTGAACCCTCAATTTCGGTATGAAGAAAACTTTTCAAATACCGAGCATGTGAAGCAGGGTTTGGAAGAGTGCATGGATAGGATGCTAGTTGGTGAGGATCGTATTAAAGCGGAGATACAATTAGACTTATATGAGCGAAATATGAGCGAAAGCTCGGTAAGTTTGGAAGTGAAATGGCCTTGTCTACTAGGAAGAAGCGATCACCCGGTTAGTTACTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

365

Amino Acids

42.45

Weight (kDa)

6.87

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 4 - 132 1e-54 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
AccI GTMKAC 1 cut(s) 1060
AciI CCGC 6 cut(s) 263, 314, 476, 720, 866, 986
AclWI GGATC 1 cut(s) 981
AcsI RAATTY 3 cut(s) 91, 443, 634
AfaI GTAC 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 725
AgsI TTSAA 7 cut(s) 130, 358, 368, 380, 512, 880, 912
AjuI GAANNNNNNNTTGG 2 cut(s) 920, 952
AluBI AGCT 4 cut(s) 386, 536, 770, 1029
AluI AGCT 4 cut(s) 386, 536, 770, 1029
Alw21I GWGCWC 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 709
AlwI GGATC 1 cut(s) 981
AoxI GGCC 1 cut(s) 1052
ApeKI GCWGC 2 cut(s) 752, 863
ApoI RAATTY 3 cut(s) 91, 443, 634
AspS9I GGNCC 2 cut(s) 223, 803
AsuC2I CCSGG 1 cut(s) 1082
AsuHPI GGTGA 3 cut(s) 439, 980, 1070
AvaII GGWCC 2 cut(s) 223, 803
BaeGI GKGCMC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 2 cut(s) 739, 875
BccI CCATC 5 cut(s) 50, 62, 623, 739, 825
BciVI GTATCC 2 cut(s) 142, 612
BcnI CCSGG 1 cut(s) 1082
BcoDI GTCTC 1 cut(s) 709
BfaI CTAG 3 cut(s) 111, 962, 1064
BfuI GTATCC 2 cut(s) 142, 612
BisI GCNGC 3 cut(s) 315, 753, 864
BlpI GCTNAGC 1 cut(s) 387
BlsI GCNGC 3 cut(s) 316, 754, 865
Bme1390I CCNGG 1 cut(s) 1082
Bme18I GGWCC 2 cut(s) 223, 803
BmgT120I GGNCC 2 cut(s) 223, 803
BmiI GGNNCC 2 cut(s) 29, 644
BmrFI CCNGG 1 cut(s) 1082
BmsI GCATC 8 cut(s) 29, 130, 152, 162, 569, 586, 739, 948
Bpu1102I GCTNAGC 1 cut(s) 387
BpuMI CCSGG 1 cut(s) 1082
BsaI GGTCTC 1 cut(s) 709
Bsc4I CCNNNNNNNGG 1 cut(s) 725
Bse3DI GCAATG 2 cut(s) 319, 854
BseGI GGATG 6 cut(s) 44, 61, 73, 584, 754, 963
BseLI CCNNNNNNNGG 1 cut(s) 725
BseMI GCAATG 2 cut(s) 319, 854
BseRI GAGGAG 3 cut(s) 215, 227, 829
BseSI GKGCMC 1 cut(s) 417
BseXI GCAGC 2 cut(s) 739, 875
BshFI GGCC 1 cut(s) 1054
BsiHKAI GWGCWC 1 cut(s) 15
BsiSI CCGG 2 cut(s) 473, 1082
BslI CCNNNNNNNGG 1 cut(s) 725
BsmAI GTCTC 1 cut(s) 709
BsnI GGCC 1 cut(s) 1054
Bso31I GGTCTC 1 cut(s) 709
Bsp1286I GDGCHC 2 cut(s) 15, 417
Bsp143I GATC 2 cut(s) 973, 1075
Bsp1720I GCTNAGC 1 cut(s) 387
BspACI CCGC 6 cut(s) 263, 314, 476, 720, 866, 986
BspANI GGCC 1 cut(s) 1054
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 2 cut(s) 29, 644
BspPI GGATC 1 cut(s) 981
BspTNI GGTCTC 1 cut(s) 709
BsrDI GCAATG 2 cut(s) 319, 854
BssMI GATC 2 cut(s) 973, 1075
Bst6I CTCTTC 2 cut(s) 513, 936
BstC8I GCNNGC 1 cut(s) 861
BstDEI CTNAG 2 cut(s) 387, 771
BstF5I GGATG 6 cut(s) 44, 61, 73, 584, 754, 963
BstKTI GATC 2 cut(s) 976, 1078
BstMAI GTCTC 1 cut(s) 709
BstMBI GATC 2 cut(s) 973, 1075
BstMWI GCNNNNNNNGC 1 cut(s) 928
BstNSI RCATGY 2 cut(s) 863, 926
BstSCI CCNGG 1 cut(s) 1080
BstSLI GKGCMC 1 cut(s) 417
BstV1I GCAGC 2 cut(s) 739, 875
BsuI GTATCC 2 cut(s) 142, 612
BsuRI GGCC 1 cut(s) 1054
BtsCI GGATG 6 cut(s) 44, 61, 73, 584, 754, 963
Cac8I GCNNGC 1 cut(s) 861
CciI TCATGA 1 cut(s) 625
Cfr13I GGNCC 2 cut(s) 223, 803
Csp6I GTAC 1 cut(s) 117
CviAII CATG 7 cut(s) 120, 309, 626, 647, 860, 923, 949
CviJI RGCY 8 cut(s) 30, 108, 317, 386, 536, 770, 1029, 1054
CviKI_1 RGCY 8 cut(s) 30, 108, 317, 386, 536, 770, 1029, 1054
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 2 cut(s) 387, 771
DpnI GATC 2 cut(s) 975, 1077
DpnII GATC 2 cut(s) 973, 1075
Eam1104I CTCTTC 2 cut(s) 513, 936
EarI CTCTTC 2 cut(s) 513, 936
Eco31I GGTCTC 1 cut(s) 709
Eco47I GGWCC 2 cut(s) 223, 803
EcoT22I ATGCAT 1 cut(s) 145
FaeI CATG 7 cut(s) 123, 312, 629, 650, 863, 926, 952
FatI CATG 7 cut(s) 119, 308, 625, 646, 859, 922, 948
FauI CCCGC 3 cut(s) 256, 727, 859
FblI GTMKAC 1 cut(s) 1060
Fnu4HI GCNGC 3 cut(s) 315, 753, 864
FokI GGATG 6 cut(s) 51, 68, 80, 591, 761, 970
Fsp4HI GCNGC 3 cut(s) 315, 753, 864
FspBI CTAG 3 cut(s) 111, 962, 1064
GluI GCNGC 3 cut(s) 315, 753, 864
HaeIII GGCC 1 cut(s) 1054
HapII CCGG 2 cut(s) 473, 1082
Hin1II CATG 7 cut(s) 123, 312, 629, 650, 863, 926, 952
HinfI GANTC 4 cut(s) 304, 704, 775, 835
HpaII CCGG 2 cut(s) 473, 1082
HphI GGTGA 3 cut(s) 439, 980, 1070
Hpy166II GTNNAC 3 cut(s) 303, 839, 1061
Hpy188I TCNGA 3 cut(s) 55, 148, 709
Hpy188III TCNNGA 1 cut(s) 626
Hpy8I GTNNAC 3 cut(s) 303, 839, 1061
HpyF10VI GCNNNNNNNGC 1 cut(s) 928
HpyF3I CTNAG 2 cut(s) 387, 771
Hsp92II CATG 7 cut(s) 123, 312, 629, 650, 863, 926, 952
Kzo9I GATC 2 cut(s) 973, 1075
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 2 cut(s) 486, 917
Lsp1109I GCAGC 2 cut(s) 739, 875
LweI GCATC 8 cut(s) 29, 130, 152, 162, 569, 586, 739, 948
MaeI CTAG 3 cut(s) 111, 962, 1064
MaeIII GTNAC 3 cut(s) 232, 478, 1088
MalI GATC 2 cut(s) 975, 1077
MboI GATC 2 cut(s) 973, 1075
MboII GAAGA 4 cut(s) 500, 911, 953, 1080
MhlI GDGCHC 2 cut(s) 15, 417
MlyI GAGTC 2 cut(s) 298, 844
MmeI TCCRAC 3 cut(s) 33, 41, 318
Mph1103I ATGCAT 1 cut(s) 145
MseI TTAA 2 cut(s) 156, 981
MslI CAYNNNNRTG 3 cut(s) 47, 545, 594
MspA1I CMGCKG 1 cut(s) 866
MspI CCGG 2 cut(s) 473, 1082
MspR9I CCNGG 1 cut(s) 1082
MwoI GCNNNNNNNGC 1 cut(s) 928
NciI CCSGG 1 cut(s) 1082
NdeII GATC 2 cut(s) 973, 1075
NlaIII CATG 7 cut(s) 123, 312, 629, 650, 863, 926, 952
NlaIV GGNNCC 2 cut(s) 29, 644
NsiI ATGCAT 1 cut(s) 145
NspI RCATGY 2 cut(s) 863, 926
PaeI GCATGC 1 cut(s) 863
PagI TCATGA 1 cut(s) 625
PfeI GAWTC 2 cut(s) 704, 775
PkrI GCNGC 3 cut(s) 316, 754, 865
PleI GAGTC 2 cut(s) 298, 843
PpsI GAGTC 2 cut(s) 298, 843
PsiI TTATAA 1 cut(s) 255
PspN4I GGNNCC 2 cut(s) 29, 644
PspPI GGNCC 2 cut(s) 223, 803
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
RseI CAYNNNNRTG 3 cut(s) 47, 545, 594
SaqAI TTAA 2 cut(s) 156, 981
SatI GCNGC 3 cut(s) 315, 753, 864
Sau3AI GATC 2 cut(s) 973, 1075
Sau96I GGNCC 2 cut(s) 223, 803
SchI GAGTC 2 cut(s) 298, 844
ScrFI CCNGG 1 cut(s) 1082
SduI GDGCHC 2 cut(s) 15, 417
SetI ASST 8 cut(s) 118, 207, 388, 488, 538, 702, 772, 1031
SfaNI GCATC 8 cut(s) 29, 130, 152, 162, 569, 586, 739, 948
SinI GGWCC 2 cut(s) 223, 803
SmiMI CAYNNNNRTG 3 cut(s) 47, 545, 594
SphI GCATGC 1 cut(s) 863
SsiI CCGC 6 cut(s) 263, 314, 476, 720, 866, 986
SspMI CTAG 3 cut(s) 111, 962, 1064
StyD4I CCNGG 1 cut(s) 1080
TauI GCSGC 1 cut(s) 317
TfiI GAWTC 2 cut(s) 704, 775
Tru1I TTAA 2 cut(s) 156, 981
Tru9I TTAA 2 cut(s) 156, 981
TseI GCWGC 2 cut(s) 752, 863
TspDTI ATGAA 6 cut(s) 293, 543, 585, 614, 836, 912
TspGWI ACGGA 1 cut(s) 80
VpaK11BI GGWCC 2 cut(s) 223, 803
XapI RAATTY 3 cut(s) 91, 443, 634
XceI RCATGY 2 cut(s) 863, 926
XmiI GTMKAC 1 cut(s) 1060
XspI CTAG 3 cut(s) 111, 962, 1064
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.