Rorug05G0477700

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002052
Physical Location & Seq
Reverse (-)
65745919 .. 65746533
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0477700.1

Sequence Viewer

Length: 615 bp
ATGGAGTCTGGTGATCAACAAACTCCAGAAAATTCAGGTGATCAGCAAGTTACAAGCCAAGTAGCTGCTGCAAAGTCCTATGAGTGTACTTTTTGCAAAAGGGGGTTCTCTAATGCACAAGCTCTAGGAGGGCACATGAATATTCACAGAAAAGATAAAGCAAAGCTCAAGCAAGTCTCCTCATCAACAAATGTTGTTGAAACCAAACAACAACAAAGATTGCCTTTGGAGATCCCAAAGATGCCACCCTCTTACTCTCCAGTACTTCCCAAGATTAATCCCAGCATCACTTCTTTGGAAGCCATTAACATGCCTCATGCTGATCATATCGAAAGAAGTGCTACAACAATAAGGGGATCATCATGGCCGGCTGATTGGTTTCTCAATGCTAAAGAAGGTGATAATCAATTAAACCAAGTCCAACAACTTCCACTGTTTTCTCAAGCACCATCAGATCAAGATCATCAATATCAAGGTGGACAACAACAACAACCAGAAGTTCAAGGGGATCAAAGTGAAAAGGGTTCAGATTTAGACCTTGAGCTTAGACTAGGGCCCGAGCCTCAAGATTCCTCATCAACGTCGGCAAAAGCTACTACGAGAAAGTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

22.52

Weight (kDa)

5.73

Isoelectric Point (pI)

66.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 27 - 51 8.5e-06 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 226, 364, 516
AcoI YGGCCR 1 cut(s) 365
AcsI RAATTY 1 cut(s) 31
AfaI GTAC 2 cut(s) 88, 264
AgsI TTSAA 2 cut(s) 200, 503
AluBI AGCT 5 cut(s) 65, 122, 166, 544, 593
AluI AGCT 5 cut(s) 65, 122, 166, 544, 593
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 3 cut(s) 226, 364, 516
Ama87I CYCGRG 1 cut(s) 557
AoxI GGCC 2 cut(s) 365, 554
ApaI GGGCCC 1 cut(s) 558
ApeKI GCWGC 2 cut(s) 65, 68
ApoI RAATTY 1 cut(s) 31
AseI ATTAAT 1 cut(s) 276
AspS9I GGNCC 2 cut(s) 554, 555
AsuHPI GGTGA 3 cut(s) 23, 50, 410
AvaI CYCGRG 1 cut(s) 557
BaeGI GKGCMC 2 cut(s) 135, 558
BanII GRGCYC 1 cut(s) 558
BbvI GCAGC 2 cut(s) 52, 55
BccI CCATC 1 cut(s) 457
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BclI TGATCA 3 cut(s) 13, 40, 322
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 2 cut(s) 125, 551
BisI GCNGC 2 cut(s) 66, 69
BlsI GCNGC 2 cut(s) 67, 70
BmcAI AGTACT 1 cut(s) 264
BmeT110I CYCGRG 1 cut(s) 557
BmgT120I GGNCC 2 cut(s) 554, 555
BmiI GGNNCC 1 cut(s) 556
BmsI GCATC 2 cut(s) 231, 294
BpmI CTGGAG 2 cut(s) 9, 243
BpuEI CTTGAG 4 cut(s) 152, 426, 549, 560
BsaBI GATNNNNATC 1 cut(s) 459
Bse118I RCCGGY 1 cut(s) 367
Bse1I ACTGG 1 cut(s) 260
Bse8I GATNNNNATC 1 cut(s) 459
BseJI GATNNNNATC 1 cut(s) 459
BseNI ACTGG 1 cut(s) 260
BseRI GAGGAG 1 cut(s) 169
BseSI GKGCMC 2 cut(s) 135, 558
BseXI GCAGC 2 cut(s) 52, 55
BseYI CCCAGC 1 cut(s) 281
BshFI GGCC 2 cut(s) 367, 556
BsiHKCI CYCGRG 1 cut(s) 557
BsiSI CCGG 1 cut(s) 368
BsmAI GTCTC 1 cut(s) 181
BsnI GGCC 2 cut(s) 367, 556
BsoBI CYCGRG 1 cut(s) 557
Bsp120I GGGCCC 1 cut(s) 554
Bsp1286I GDGCHC 2 cut(s) 135, 558
Bsp143I GATC 8 cut(s) 13, 40, 231, 322, 356, 454, 460, 508
BspANI GGCC 2 cut(s) 367, 556
BspLI GGNNCC 1 cut(s) 556
BspPI GGATC 3 cut(s) 226, 364, 516
BsrFI RCCGGY 1 cut(s) 367
BsrI ACTGG 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 367
BssMI GATC 8 cut(s) 13, 40, 231, 322, 356, 454, 460, 508
Bst4CI ACNGT 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 1 cut(s) 545
BstKTI GATC 8 cut(s) 16, 43, 234, 325, 359, 457, 463, 511
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 8 cut(s) 13, 40, 231, 322, 356, 454, 460, 508
BstNSI RCATGY 1 cut(s) 313
BstSLI GKGCMC 2 cut(s) 135, 558
BstV1I GCAGC 2 cut(s) 52, 55
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 2 cut(s) 367, 556
BtsIMutI CAGTG 1 cut(s) 431
Cac8I GCNNGC 1 cut(s) 369
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 2 cut(s) 554, 555
Csp6I GTAC 2 cut(s) 87, 263
CviAII CATG 4 cut(s) 136, 310, 317, 363
CviQI GTAC 2 cut(s) 87, 263
DdeI CTNAG 1 cut(s) 545
DpnI GATC 8 cut(s) 15, 42, 233, 324, 358, 456, 462, 510
DpnII GATC 8 cut(s) 13, 40, 231, 322, 356, 454, 460, 508
EaeI YGGCCR 1 cut(s) 365
Eco24I GRGCYC 1 cut(s) 558
Eco88I CYCGRG 1 cut(s) 557
EcoO109I RGGNCCY 1 cut(s) 554
EcoT38I GRGCYC 1 cut(s) 558
FaeI CATG 4 cut(s) 139, 313, 320, 366
FaiI YATR 6 cut(s) 81, 137, 311, 318, 327, 364
FalI AAGNNNNNCTT 2 cut(s) 208, 240
FatI CATG 4 cut(s) 135, 309, 316, 362
FbaI TGATCA 3 cut(s) 13, 40, 322
Fnu4HI GCNGC 2 cut(s) 66, 69
FriOI GRGCYC 1 cut(s) 558
Fsp4HI GCNGC 2 cut(s) 66, 69
FspBI CTAG 2 cut(s) 125, 551
GluI GCNGC 2 cut(s) 66, 69
GsaI CCCAGC 1 cut(s) 285
GsuI CTGGAG 2 cut(s) 9, 243
HaeIII GGCC 2 cut(s) 367, 556
HapII CCGG 1 cut(s) 368
Hin1II CATG 4 cut(s) 139, 313, 320, 366
HinfI GANTC 2 cut(s) 5, 569
HpaII CCGG 1 cut(s) 368
HphI GGTGA 3 cut(s) 23, 50, 410
Hpy166II GTNNAC 2 cut(s) 87, 479
Hpy188I TCNGA 2 cut(s) 454, 529
Hpy188III TCNNGA 3 cut(s) 26, 458, 566
Hpy8I GTNNAC 2 cut(s) 87, 479
Hpy99I CGWCG 1 cut(s) 586
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 1 cut(s) 435
HpyCH4IV ACGT 1 cut(s) 581
HpyCH4V TGCA 3 cut(s) 71, 96, 116
HpyF3I CTNAG 1 cut(s) 545
HpySE526I ACGT 1 cut(s) 581
Hsp92II CATG 4 cut(s) 139, 313, 320, 366
KroI GCCGGC 1 cut(s) 367
KroNI GCCGGC 1 cut(s) 369
Ksp22I TGATCA 3 cut(s) 13, 40, 322
Kzo9I GATC 8 cut(s) 13, 40, 231, 322, 356, 454, 460, 508
LpnPI CCDG 6 cut(s) 21, 39, 273, 295, 381, 507
Lsp1109I GCAGC 2 cut(s) 52, 55
LweI GCATC 2 cut(s) 231, 294
MaeI CTAG 2 cut(s) 125, 551
MaeII ACGT 1 cut(s) 581
MaeIII GTNAC 1 cut(s) 49
MalI GATC 8 cut(s) 15, 42, 233, 324, 358, 456, 462, 510
MboI GATC 8 cut(s) 13, 40, 231, 322, 356, 454, 460, 508
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 2 cut(s) 135, 558
MluCI AATT 2 cut(s) 31, 407
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 445
MnlI CCTC 6 cut(s) 122, 190, 259, 324, 573, 583
MroNI GCCGGC 1 cut(s) 367
MseI TTAA 3 cut(s) 276, 306, 410
MslI CAYNNNNRTG 1 cut(s) 308
MspI CCGG 1 cut(s) 368
NaeI GCCGGC 1 cut(s) 369
NdeII GATC 8 cut(s) 13, 40, 231, 322, 356, 454, 460, 508
NgoMIV GCCGGC 1 cut(s) 367
NlaIII CATG 4 cut(s) 139, 313, 320, 366
NlaIV GGNNCC 1 cut(s) 556
NspI RCATGY 1 cut(s) 313
PdiI GCCGGC 1 cut(s) 369
PfeI GAWTC 1 cut(s) 569
PkrI GCNGC 2 cut(s) 67, 70
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PshBI ATTAAT 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 556
PspOMI GGGCCC 1 cut(s) 554
PspPI GGNCC 2 cut(s) 554, 555
PsuI RGATCY 1 cut(s) 231
RsaI GTAC 2 cut(s) 88, 264
RsaNI GTAC 2 cut(s) 87, 263
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 3 cut(s) 276, 306, 410
SatI GCNGC 2 cut(s) 66, 69
Sau3AI GATC 8 cut(s) 13, 40, 231, 322, 356, 454, 460, 508
Sau96I GGNCC 2 cut(s) 554, 555
ScaI AGTACT 1 cut(s) 264
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 2 cut(s) 135, 558
SfaNI GCATC 2 cut(s) 231, 294
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 4 cut(s) 167, 441, 539, 564
SmoI CTYRAG 4 cut(s) 167, 441, 539, 564
Sse9I AATT 2 cut(s) 31, 407
SspI AATATT 1 cut(s) 142
SspMI CTAG 2 cut(s) 125, 551
TaaI ACNGT 1 cut(s) 435
TaiI ACGT 1 cut(s) 584
TaqI TCGA 1 cut(s) 330
TasI AATT 2 cut(s) 31, 407
TatI WGTACW 2 cut(s) 86, 262
TfiI GAWTC 1 cut(s) 569
Tru1I TTAA 3 cut(s) 276, 306, 410
Tru9I TTAA 3 cut(s) 276, 306, 410
TscAI CASTG 1 cut(s) 438
TseI GCWGC 2 cut(s) 65, 68
TspDTI ATGAA 1 cut(s) 152
TspRI CASTG 1 cut(s) 438
VspI ATTAAT 1 cut(s) 276
XapI RAATTY 1 cut(s) 31
XceI RCATGY 1 cut(s) 313
XspI CTAG 2 cut(s) 125, 551
ZrmI AGTACT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.