Rw6G028600

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002052
Physical Location & Seq
Forward (+)
52682595 .. 52683639
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G028600.1

Sequence Viewer

Length: 813 bp
ATGGGATTTATCTATGAGTTGATGGATGCTGTAAAAGAAAAGATAGCTAAGAATCTTGGAAATGTGGAAGCAAAGTATGCTCCAATTTGGATGAGAATAGATAATAGATGGAGTCCACAACTTCATCAACCATTGCATGCAGTGGGTTATTACTTGAACCCTCAATTTCGGTATGAAGAAAACTTTTCAAATACCGAGCTTGTGAAGAAGGGTTTGGAAGAGTGCATGGATAGGATGCTAGTTGGTGAGGATCGTATTAAAGCGGAGATACAATTAGACTTATATGAGAGAAAGCTCGGTAAGTTTGGAAGTGAAATGGCCTTGTCTACTAGGAAGAAGCAATTACCCGTGTTTTGGTGGGAAAAATATGGGACACAAATACCGGAGTTGATGAATTTTGCTACTCGGGTCCTTTCCCTTACTTGTAGTGCATCGGGGTGTGAGAGGAATTGGAGCACTTTTGAAATGATTCATACCAAAAAGAGGAATAGGCTTGAGCATAAGAGGTTGCATGCTTTAGTCTATGTGAAATACAATGTTGTTCTAAGAGATAGGTCTATGAAAAGAAACGCCACAAGGATTGATCCTATTGTTGTGGAAGAAATTGAATCCGATGATGAATGGATAACGGAGATGGAGGATCCGAATAGACAATCTAACATAGAAATATTGAATGATGAGGCGGTAAGGAATGTGCCAATTGGTACATACCAAAGTACCCTAATAGATAGTGAGCCTACTCCTTCTCTTGATGAGCCTATTGTTTTATACAAAAGGAAATCTAGTCAAGCACCAAGTTCAAGTAAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

270

Amino Acids

31.64

Weight (kDa)

6.56

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 111 - 179 2.5e-13 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 326
AciI CCGC 2 cut(s) 263, 683
AclWI GGATC 4 cut(s) 258, 578, 635, 648
AcsI RAATTY 1 cut(s) 394
AfaI GTAC 2 cut(s) 706, 718
AfiI CCNNNNNNNGG 2 cut(s) 354, 483
AgsI TTSAA 6 cut(s) 157, 189, 464, 608, 673, 801
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 3 cut(s) 47, 199, 295
AluI AGCT 3 cut(s) 47, 199, 295
Alw21I GWGCWC 1 cut(s) 458
AlwI GGATC 4 cut(s) 258, 578, 635, 648
Ama87I CYCGRG 1 cut(s) 405
AoxI GGCC 1 cut(s) 318
ApoI RAATTY 1 cut(s) 394
Asp700I GAANNNNTTC 1 cut(s) 468
AspS9I GGNCC 1 cut(s) 409
AsuHPI GGTGA 1 cut(s) 257
AvaI CYCGRG 1 cut(s) 405
AvaII GGWCC 1 cut(s) 409
BaeI ACNNNNGTAYC 2 cut(s) 700, 733
BamHI GGATCC 1 cut(s) 640
Bbv12I GWGCWC 1 cut(s) 458
BccI CCATC 3 cut(s) 16, 102, 628
BfaI CTAG 3 cut(s) 239, 330, 783
Bme18I GGWCC 1 cut(s) 409
BmeT110I CYCGRG 1 cut(s) 405
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 2 cut(s) 410, 642
BmsI GCATC 3 cut(s) 16, 225, 440
BpuEI CTTGAG 1 cut(s) 515
BsaWI WCCGGW 1 cut(s) 382
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 483
Bse3DI GCAATG 1 cut(s) 131
BseGI GGATG 3 cut(s) 31, 96, 240
BseLI CCNNNNNNNGG 2 cut(s) 354, 483
BseMI GCAATG 1 cut(s) 131
BshFI GGCC 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 458
BsiHKCI CYCGRG 1 cut(s) 405
BsiSI CCGG 1 cut(s) 383
BslFI GGGAC 1 cut(s) 385
BslI CCNNNNNNNGG 2 cut(s) 354, 483
BsmFI GGGAC 1 cut(s) 385
BsnI GGCC 1 cut(s) 320
BsoBI CYCGRG 1 cut(s) 405
Bsp1286I GDGCHC 1 cut(s) 458
Bsp143I GATC 3 cut(s) 250, 583, 640
BspACI CCGC 2 cut(s) 263, 683
BspANI GGCC 1 cut(s) 320
BspLI GGNNCC 2 cut(s) 410, 642
BspPI GGATC 4 cut(s) 258, 578, 635, 648
BsrDI GCAATG 1 cut(s) 131
BssMI GATC 3 cut(s) 250, 583, 640
Bst6I CTCTTC 1 cut(s) 213
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 138, 513
BstDEI CTNAG 2 cut(s) 48, 545
BstF5I GGATG 3 cut(s) 31, 96, 240
BstKTI GATC 3 cut(s) 253, 586, 643
BstMBI GATC 3 cut(s) 250, 583, 640
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNSI RCATGY 2 cut(s) 140, 515
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
BsuRI GGCC 1 cut(s) 320
BtsCI GGATG 3 cut(s) 31, 96, 240
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 138, 513
Cfr13I GGNCC 1 cut(s) 409
Csp6I GTAC 2 cut(s) 705, 717
CspCI CAANNNNNGTGG 2 cut(s) 562, 597
CviAII CATG 3 cut(s) 137, 226, 512
CviJI RGCY 7 cut(s) 47, 199, 295, 320, 493, 736, 757
CviKI_1 RGCY 7 cut(s) 47, 199, 295, 320, 493, 736, 757
CviQI GTAC 2 cut(s) 705, 717
DdeI CTNAG 2 cut(s) 48, 545
DpnI GATC 3 cut(s) 252, 585, 642
DpnII GATC 3 cut(s) 250, 583, 640
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 409
Eco88I CYCGRG 1 cut(s) 405
EcoO109I RGGNCCY 1 cut(s) 409
FaeI CATG 3 cut(s) 140, 229, 515
FaqI GGGAC 1 cut(s) 385
FatI CATG 3 cut(s) 136, 225, 511
FblI GTMKAC 1 cut(s) 326
FokI GGATG 3 cut(s) 38, 103, 247
FspBI CTAG 3 cut(s) 239, 330, 783
HaeIII GGCC 1 cut(s) 320
HapII CCGG 1 cut(s) 383
Hin1II CATG 3 cut(s) 140, 229, 515
HinfI GANTC 4 cut(s) 52, 112, 469, 608
HpaII CCGG 1 cut(s) 383
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 2 cut(s) 116, 327
Hpy188I TCNGA 2 cut(s) 613, 645
Hpy188III TCNNGA 1 cut(s) 749
Hpy8I GTNNAC 2 cut(s) 116, 327
HpyAV CCTTC 2 cut(s) 202, 753
HpyCH4V TGCA 5 cut(s) 136, 140, 225, 431, 511
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 2 cut(s) 48, 545
Hsp92II CATG 3 cut(s) 140, 229, 515
Kzo9I GATC 3 cut(s) 250, 583, 640
LmnI GCTCC 2 cut(s) 85, 453
LpnPI CCDG 1 cut(s) 396
LweI GCATC 3 cut(s) 16, 225, 440
MaeI CTAG 3 cut(s) 239, 330, 783
MalI GATC 3 cut(s) 252, 585, 642
MboI GATC 3 cut(s) 250, 583, 640
MboII GAAGA 5 cut(s) 188, 217, 230, 346, 611
MfeI CAATTG 1 cut(s) 699
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 1 cut(s) 458
MluCI AATT 8 cut(s) 84, 164, 272, 341, 394, 448, 603, 699
MlyI GAGTC 1 cut(s) 121
MnlI CCTC 7 cut(s) 171, 241, 438, 477, 498, 631, 673
MroXI GAANNNNTTC 1 cut(s) 468
MseI TTAA 2 cut(s) 258, 811
MslI CAYNNNNRTG 1 cut(s) 436
MspI CCGG 1 cut(s) 383
MunI CAATTG 1 cut(s) 699
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 3 cut(s) 250, 583, 640
NlaIII CATG 3 cut(s) 140, 229, 515
NlaIV GGNNCC 2 cut(s) 410, 642
NspI RCATGY 2 cut(s) 140, 515
PaeI GCATGC 2 cut(s) 140, 515
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 3 cut(s) 52, 469, 608
PleI GAGTC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 120
PpuMI RGGWCCY 1 cut(s) 409
Psp5II RGGWCCY 1 cut(s) 409
PspN4I GGNNCC 2 cut(s) 410, 642
PspPI GGNCC 1 cut(s) 409
PspPPI RGGWCCY 1 cut(s) 409
PsuI RGATCY 1 cut(s) 640
RsaI GTAC 2 cut(s) 706, 718
RsaNI GTAC 2 cut(s) 705, 717
RseI CAYNNNNRTG 1 cut(s) 436
SaqAI TTAA 2 cut(s) 258, 811
Sau3AI GATC 3 cut(s) 250, 583, 640
Sau96I GGNCC 1 cut(s) 409
SchI GAGTC 1 cut(s) 121
SduI GDGCHC 1 cut(s) 458
SetI ASST 5 cut(s) 49, 201, 297, 509, 557
SfaNI GCATC 3 cut(s) 16, 225, 440
SinI GGWCC 1 cut(s) 409
SmiMI CAYNNNNRTG 1 cut(s) 436
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
SphI GCATGC 2 cut(s) 140, 515
Sse9I AATT 8 cut(s) 84, 164, 272, 341, 394, 448, 603, 699
SsiI CCGC 2 cut(s) 263, 683
SspI AATATT 1 cut(s) 669
SspMI CTAG 3 cut(s) 239, 330, 783
TasI AATT 8 cut(s) 84, 164, 272, 341, 394, 448, 603, 699
TfiI GAWTC 3 cut(s) 52, 469, 608
Tru1I TTAA 2 cut(s) 258, 811
Tru9I TTAA 2 cut(s) 258, 811
TscAI CASTG 1 cut(s) 147
TspDTI ATGAA 6 cut(s) 113, 189, 407, 461, 575, 633
TspGWI ACGGA 1 cut(s) 644
TspRI CASTG 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 409
XapI RAATTY 1 cut(s) 394
XceI RCATGY 2 cut(s) 140, 515
XmiI GTMKAC 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 468
XspI CTAG 3 cut(s) 239, 330, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.