Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002052

Physical Location & Seq

Genomic Coordinates Reverse (-)

36427810 .. 36431246

Gene Structure 3437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19546

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

ATGCTCAATTATTTAGATAGTGTTGTGGAGGAGGTAGGGGAAGAGAATGTGGTCCAAATAGTTACGGACAATGCTTCTAATTATAAGTGGGCGGGAAAGGAACTTATGAAGTATAGAAGCAAATTGTGGTGGACTCCATCTGCGGCTCATTGCATTGACTTGATGTTGGAGGATATAAGCAAGTTGAAAGTCTTTGAAACTACCATTCAAAGAGCTAAGCAAATTTTGAAGTTCATTTATGGGCATACACAAGTTCTTTCCATTATGAGAAAGTTCACCGGCGACAAAGAGATTATTCGTCCGGCGGTTACAAGGTTTGCCACATCTTTTCTCTCTCTTCAAAGTTTATATAAGCAAAGGAAAGCTCTTATTAGTATGTTTTCATCTAAAGATTGGAATGAATGTGGATGTACAAAACATAAAGATGCTTATGATGTGAGGAAGTGGATACTTCGTGATGGAAGTTTTTGGAACCATGTTGCTTATTGCATAAAAAGTGTTCTGCCACTTGTTTGTGTTTTGAGAGAGGTTGATTCGGAAGTGAGACCTGCTATGGGATTTATATATGAGTTAACGGATGCCGCAAAAGAGAAGATAGCAAAGAAACTTGGAAATGTGGAAGCAAGGTATGGACCAATTTGGAGGAGAATAGATAATAGATTGAAATGCATGGATAGGATGCTAGATGGTGAGGATCGTATTAAAGCGGAGATCCAATTTGACTTATATGAGCGAAAACTTGGTAAGTTCGGAAGTGACATGGCTTTGTCTACTAGGAAGAAGCGATCACCCGTGTTTTGGTGGGAAAAATATGGGACACAAACATCGGAGTTGATGAATTTTGCTACTCGGGTGCTTTCCCTTACTTGTAGTGCATCGGGGTGTGAGAGGAATTGGAGCACTTTTGAAATGATTCATACCAAAAAGAGGAATAGGCTTGAGCATAAGAGATTGCATGCTTTAGTTTATGTGAAATACAATATTTCTCTAAGAGATAGGAGTATGAAAAGAAATGCCACAATGATCGATCCTATTGTTGTGGAAGAAATTGAATCCGATGATGAATGGATAACGGAGATAGAGGATCCAGTTCTCCTTGCTGATCCTAATTGGCTTAAGGATAGAATAGAAGATCTAACATTGAATGATGAGGCGGTAAGAAATGTGCCAGTTGGTTCATACCAAAGTACTCTAATGGATAGAGAGCCTATTCTTCGTGAGCCTTCTCCTCCTCCCCGTGAGCCTACTCTTTCTCTTGATGAGCCTATTGTTTTATACAAAAGGAAATCTAGTCAAGCACCAAGTTCAAGTAGAAGAAAGCTTCCAAGGAAATCAATGCGTCTTGAAGACATTGCGGATGATGATATTAGAACTAATCCATATGAAGATACTAATCCTCTCTTTCAGCACCAAGATGATGATAGTGATGGCGATGATAGTGATGGTGGTGATAGTGATGGTGGGGATAGTTTGGATGGTGATCTTCTAGTTGATGAGGAAGATGATTTCCAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

505

Amino Acids

58.5

Weight (kDa)

5.56

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF659	PF04937	2 - 75	5.2e-27	Domain of unknown function (DUF659)
Dimer_Tnp_hAT	PF05699	260 - 328	2.9e-11	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36095 AT5G33406
fragaria_vesca	FvH4_2g19761 FvH4_2g31910 FvH4_3g32805 FvH4_3g33921 FvH4_3g33922 FvH4_4g11993 FvH4_5g36511 FvH4_6g16931 FvH4_6g16931
malus_domestica	MD01G1106300.v1.1 MD01G1106700.v1.1 MD08G1077600.v1.1
pyrus_communis	pycom01g13300 pycom06g05900 pycom12g14200 pycom13g27730 pycom16g16790
rosa_chinensis	RchiOBHm_Chr1g0361961 RchiOBHm_Chr1g0361981 RchiOBHm_Chr2g0141951 RchiOBHm_Chr7g0218361
rosa_multiflora	Rmu_co8147950.1_g000001 Rmu_co8356159.1_g000001 Rmu_sc0000117.1_g000022 Rmu_sc0007718.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097000 Rroxscaffold_2G00126330 Rroxscaffold_4G00304630 Rroxscaffold_5G00366570 Rroxscaffold_5G00366580
rosa_rugosa	Rorug03G0268800 Rorug03G0268900 Rorug05G0477700 Rorug05G0477800 RorugPtG0003500.1
rosa_samantha	Rh1AG259100 Rh4AG027200 Rh7CG313700
rosa_wichuraiana	Rw0G004680 Rw1G026970 Rw4G019360 Rw6G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	84
Acc36I	ACCTGC	1 cut(s)	556
AccI	GTMKAC	1 cut(s)	770
AciI	CCGC	7 cut(s)	92, 143, 305, 582, 707, 1154, 1355
AclWI	GGATC	6 cut(s)	702, 706, 1022, 1079, 1092, 1097
AcsI	RAATTY	2 cut(s)	222, 838
AfaI	GTAC	2 cut(s)	412, 1189
AfiI	CCNNNNNNNGG	3 cut(s)	554, 798, 927
AflII	CTTAAG	1 cut(s)	1115
AluBI	AGCT	3 cut(s)	215, 365, 1321
AluI	AGCT	3 cut(s)	215, 365, 1321
Alw21I	GWGCWC	1 cut(s)	902
Alw26I	GTCTC	1 cut(s)	538
AlwI	GGATC	6 cut(s)	702, 706, 1022, 1079, 1092, 1097
Ama87I	CYCGRG	1 cut(s)	849
ApoI	RAATTY	2 cut(s)	222, 838
Asp700I	GAANNNNTTC	1 cut(s)	912
AspS9I	GGNCC	2 cut(s)	52, 632
AsuHPI	GGTGA	5 cut(s)	268, 701, 780, 1460, 1490
AvaI	CYCGRG	1 cut(s)	849
AvaII	GGWCC	2 cut(s)	52, 632
BamHI	GGATCC	1 cut(s)	1084
BbsI	GAAGAC	1 cut(s)	1353
Bbv12I	GWGCWC	1 cut(s)	902
BccI	CCATC	7 cut(s)	145, 452, 680, 1421, 1436, 1451, 1469
BciVI	GTATCC	1 cut(s)	441
BcoDI	GTCTC	1 cut(s)	538
BfaI	CTAG	4 cut(s)	683, 774, 1290, 1487
BfrI	CTTAAG	1 cut(s)	1115
BfuAI	ACCTGC	1 cut(s)	556
BfuI	GTATCC	1 cut(s)	441
BglII	AGATCT	1 cut(s)	1132
BisI	GCNGC	2 cut(s)	144, 582
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	2 cut(s)	145, 583
BmcAI	AGTACT	1 cut(s)	1189
Bme18I	GGWCC	2 cut(s)	52, 632
BmeT110I	CYCGRG	1 cut(s)	849
BmgT120I	GGNCC	2 cut(s)	52, 632
BmiI	GGNNCC	2 cut(s)	473, 1086
BmsI	GCATC	4 cut(s)	415, 568, 669, 884
BpiI	GAAGAC	1 cut(s)	1353
Bpu1102I	GCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	959
Bsa29I	ATCGAT	1 cut(s)	1026
BsaBI	GATNNNNATC	2 cut(s)	1392, 1479
BsaI	GGTCTC	1 cut(s)	538
BsaJI	CCNNGG	1 cut(s)	1325
Bsc4I	CCNNNNNNNGG	3 cut(s)	554, 798, 927
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	2 cut(s)	1088, 1169
Bse3DI	GCAATG	2 cut(s)	148, 1350
Bse8I	GATNNNNATC	2 cut(s)	1392, 1479
BseCI	ATCGAT	1 cut(s)	1026
BseDI	CCNNGG	1 cut(s)	1325
BseGI	GGATG	5 cut(s)	413, 583, 684, 1363, 1480
BseJI	GATNNNNATC	2 cut(s)	1392, 1479
BseLI	CCNNNNNNNGG	3 cut(s)	554, 798, 927
BseMI	GCAATG	2 cut(s)	148, 1350
BseNI	ACTGG	2 cut(s)	1088, 1169
BseRI	GAGGAG	4 cut(s)	44, 658, 1218, 1221
BshVI	ATCGAT	1 cut(s)	1026
BsiHKAI	GWGCWC	1 cut(s)	902
BsiHKCI	CYCGRG	1 cut(s)	849
BsiSI	CCGG	2 cut(s)	279, 302
BslFI	GGGAC	1 cut(s)	829
BslI	CCNNNNNNNGG	3 cut(s)	554, 798, 927
BsmAI	GTCTC	1 cut(s)	538
BsmFI	GGGAC	1 cut(s)	829
Bso31I	GGTCTC	1 cut(s)	538
BsoBI	CYCGRG	1 cut(s)	849
Bsp1286I	GDGCHC	1 cut(s)	902
Bsp1407I	TGTACA	1 cut(s)	410
Bsp143I	GATC	9 cut(s)	694, 711, 785, 1023, 1027, 1084, 1102, 1132, 1480
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	7 cut(s)	92, 143, 305, 582, 707, 1154, 1355
BspDI	ATCGAT	1 cut(s)	1026
BspLI	GGNNCC	2 cut(s)	473, 1086
BspMI	ACCTGC	1 cut(s)	556
BspPI	GGATC	6 cut(s)	702, 706, 1022, 1079, 1092, 1097
BspTI	CTTAAG	1 cut(s)	1115
BspTNI	GGTCTC	1 cut(s)	538
BsrDI	GCAATG	2 cut(s)	148, 1350
BsrFI	RCCGGY	1 cut(s)	278
BsrGI	TGTACA	1 cut(s)	410
BsrI	ACTGG	2 cut(s)	1088, 1169
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	1325
BssMI	GATC	9 cut(s)	694, 711, 785, 1023, 1027, 1084, 1102, 1132, 1480
BssT1I	CCWWGG	1 cut(s)	1325
Bst6I	CTCTTC	2 cut(s)	36, 342
BstAFI	CTTAAG	1 cut(s)	1115
BstAUI	TGTACA	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	957
BstDEI	CTNAG	2 cut(s)	216, 989
BstF5I	GGATG	5 cut(s)	413, 583, 684, 1363, 1480
BstKTI	GATC	9 cut(s)	697, 714, 788, 1026, 1030, 1087, 1105, 1135, 1483
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	9 cut(s)	694, 711, 785, 1023, 1027, 1084, 1102, 1132, 1480
BstNSI	RCATGY	1 cut(s)	959
BstV2I	GAAGAC	1 cut(s)	1353
BstX2I	RGATCY	3 cut(s)	711, 1084, 1132
BstYI	RGATCY	3 cut(s)	711, 1084, 1132
Bsu15I	ATCGAT	1 cut(s)	1026
BsuI	GTATCC	1 cut(s)	441
BsuTUI	ATCGAT	1 cut(s)	1026
BtgZI	GCGATG	1 cut(s)	1446
BtsCI	GGATG	5 cut(s)	413, 583, 684, 1363, 1480
BveI	ACCTGC	1 cut(s)	556
Cac8I	GCNNGC	1 cut(s)	957
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	52, 632
ClaI	ATCGAT	1 cut(s)	1026
CseI	GACGC	1 cut(s)	1328
Csp6I	GTAC	2 cut(s)	411, 1188
CviAII	CATG	5 cut(s)	476, 670, 760, 956, 1515
CviQI	GTAC	2 cut(s)	411, 1188
DdeI	CTNAG	2 cut(s)	216, 989
DpnI	GATC	9 cut(s)	696, 713, 787, 1025, 1029, 1086, 1104, 1134, 1482
DpnII	GATC	9 cut(s)	694, 711, 785, 1023, 1027, 1084, 1102, 1132, 1480
Eam1104I	CTCTTC	2 cut(s)	36, 342
EarI	CTCTTC	2 cut(s)	36, 342
Eco130I	CCWWGG	1 cut(s)	1325
Eco31I	GGTCTC	1 cut(s)	538
Eco47I	GGWCC	2 cut(s)	52, 632
Eco88I	CYCGRG	1 cut(s)	849
EcoT14I	CCWWGG	1 cut(s)	1325
EcoT22I	ATGCAT	1 cut(s)	671
ErhI	CCWWGG	1 cut(s)	1325
FaeI	CATG	5 cut(s)	479, 673, 763, 959, 1518
FaqI	GGGAC	1 cut(s)	829
FatI	CATG	5 cut(s)	475, 669, 759, 955, 1514
FauI	CCCGC	1 cut(s)	85
FauNDI	CATATG	1 cut(s)	1381
FblI	GTMKAC	1 cut(s)	770
Fnu4HI	GCNGC	2 cut(s)	144, 582
FokI	GGATG	5 cut(s)	420, 590, 691, 1370, 1487
Fsp4HI	GCNGC	2 cut(s)	144, 582
FspBI	CTAG	4 cut(s)	683, 774, 1290, 1487
GluI	GCNGC	2 cut(s)	144, 582
HapII	CCGG	2 cut(s)	279, 302
HgaI	GACGC	1 cut(s)	1328
Hin1II	CATG	5 cut(s)	479, 673, 763, 959, 1518
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HindIII	AAGCTT	1 cut(s)	1319
HinfI	GANTC	4 cut(s)	133, 533, 913, 1052
HpaI	GTTAAC	1 cut(s)	573
HpaII	CCGG	2 cut(s)	279, 302
HphI	GGTGA	5 cut(s)	268, 701, 780, 1460, 1490
Hpy166II	GTNNAC	4 cut(s)	132, 276, 573, 771
Hpy188I	TCNGA	4 cut(s)	538, 752, 829, 1057
Hpy188III	TCNNGA	4 cut(s)	455, 1217, 1256, 1343
Hpy8I	GTNNAC	4 cut(s)	132, 276, 573, 771
HpyAV	CCTTC	1 cut(s)	1233
HpyCH4V	TGCA	5 cut(s)	153, 489, 669, 875, 955
HpyF3I	CTNAG	2 cut(s)	216, 989
Hsp92II	CATG	5 cut(s)	479, 673, 763, 959, 1518
KspAI	GTTAAC	1 cut(s)	573
Kzo9I	GATC	9 cut(s)	694, 711, 785, 1023, 1027, 1084, 1102, 1132, 1480
LmnI	GCTCC	1 cut(s)	897
LpnPI	CCDG	5 cut(s)	292, 315, 561, 1101, 1182
LweI	GCATC	4 cut(s)	415, 568, 669, 884
MaeI	CTAG	4 cut(s)	683, 774, 1290, 1487
MaeIII	GTNAC	3 cut(s)	61, 307, 755
MalI	GATC	9 cut(s)	696, 713, 787, 1025, 1029, 1086, 1104, 1134, 1482
MboI	GATC	9 cut(s)	694, 711, 785, 1023, 1027, 1084, 1102, 1132, 1480
MflI	RGATCY	3 cut(s)	711, 1084, 1132
MhlI	GDGCHC	1 cut(s)	902
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	1 cut(s)	147
Mph1103I	ATGCAT	1 cut(s)	671
MroXI	GAANNNNTTC	1 cut(s)	912
MseI	TTAA	3 cut(s)	572, 702, 1116
MslI	CAYNNNNRTG	3 cut(s)	423, 880, 1413
MspCI	CTTAAG	1 cut(s)	1115
MspI	CCGG	2 cut(s)	279, 302
NdeI	CATATG	1 cut(s)	1381
NdeII	GATC	9 cut(s)	694, 711, 785, 1023, 1027, 1084, 1102, 1132, 1480
NlaIII	CATG	5 cut(s)	479, 673, 763, 959, 1518
NlaIV	GGNNCC	2 cut(s)	473, 1086
NmuCI	GTSAC	1 cut(s)	755
NsiI	ATGCAT	1 cut(s)	671
NspI	RCATGY	1 cut(s)	959
PaeI	GCATGC	1 cut(s)	959
PdmI	GAANNNNTTC	1 cut(s)	912
PfeI	GAWTC	3 cut(s)	533, 913, 1052
PkrI	GCNGC	2 cut(s)	145, 583
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PsiI	TTATAA	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	473, 1086
PspPI	GGNCC	2 cut(s)	52, 632
PsuI	RGATCY	3 cut(s)	711, 1084, 1132
RsaI	GTAC	2 cut(s)	412, 1189
RsaNI	GTAC	2 cut(s)	411, 1188
RseI	CAYNNNNRTG	3 cut(s)	423, 880, 1413
SaqAI	TTAA	3 cut(s)	572, 702, 1116
SatI	GCNGC	2 cut(s)	144, 582
Sau3AI	GATC	9 cut(s)	694, 711, 785, 1023, 1027, 1084, 1102, 1132, 1480
Sau96I	GGNCC	2 cut(s)	52, 632
ScaI	AGTACT	1 cut(s)	1189
SchI	GAGTC	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	902
SetI	ASST	8 cut(s)	36, 217, 317, 367, 531, 550, 629, 1323
SfaNI	GCATC	4 cut(s)	415, 568, 669, 884
SgrAI	CRCCGGYG	1 cut(s)	278
SinI	GGWCC	2 cut(s)	52, 632
SmiMI	CAYNNNNRTG	3 cut(s)	423, 880, 1413
SmlI	CTYRAG	2 cut(s)	938, 1115
SmoI	CTYRAG	2 cut(s)	938, 1115
SphI	GCATGC	1 cut(s)	959
SsiI	CCGC	7 cut(s)	92, 143, 305, 582, 707, 1154, 1355
SspI	AATATT	1 cut(s)	982
SspMI	CTAG	4 cut(s)	683, 774, 1290, 1487
StyI	CCWWGG	1 cut(s)	1325
TaqI	TCGA	1 cut(s)	1026
TatI	WGTACW	2 cut(s)	410, 1187
TauI	GCSGC	2 cut(s)	146, 584
TfiI	GAWTC	3 cut(s)	533, 913, 1052
Tru1I	TTAA	3 cut(s)	572, 702, 1116
Tru9I	TTAA	3 cut(s)	572, 702, 1116
TseFI	GTSAC	1 cut(s)	755
Tsp45I	GTSAC	1 cut(s)	755
TspGWI	ACGGA	3 cut(s)	80, 590, 1088
Vha464I	CTTAAG	1 cut(s)	1115
VpaK11BI	GGWCC	2 cut(s)	52, 632
XapI	RAATTY	2 cut(s)	222, 838
XceI	RCATGY	1 cut(s)	959
XmiI	GTMKAC	1 cut(s)	770
XmnI	GAANNNNTTC	1 cut(s)	912
XspI	CTAG	4 cut(s)	683, 774, 1290, 1487
ZrmI	AGTACT	1 cut(s)	1189
Zsp2I	ATGCAT	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.