AT5G33406

calmodulin binding

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
12676055 .. 12678403
2349 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G33406.1

Sequence Viewer

Length: 1530 bp
ATGATGAGGAAGTTCACAGGTGGGAGGAATTTGCATAGGCCAGCGATAACAAGAATTGCAACCTCTTTCATCACGCTTGCACAATTCCACCGTCTAAAGGATAATTTGAGGAAGATGGTTCATTCCGATGAATGGAATGCTTCAAAGTGGACAAAAGAAGCTGGAGGAATGAAAATAAAATCATTTTTTTTCCAAGAAAGCTTTTGGAAGAATGTTTTACATGCTCTGAAGTTGGGAGGTCCTCTTATACAAGTTCTTAGAATGGTTGATGGGGAGAGAAAACCTCCTATGGGATACATATATGGTGCCATGGATCAAGCTAAGGAGACAATTATGAAGTCTTTCACTTATAAAGAAGAAAACTACAAAATGGCGTTTGAGATCATTGACAGAAGATGGGACATTCAACTTCATCGGCCTTTGCATGCAGCTGGCTACTATCTAAATCCAGAATTTCATTATGGACAACCGGATGATATAGGTTATGAGGAAGTCTTGGGAGGTTTTCTTGGTTGCCTTGGAAGGTTGGTTCCAAAAATTGAGACTCAAGATAAGATAATAACCGAGTTGGATGCATTTAAAAAAGCTACGGGTCTCTTTGGTATTCCAATGGCAATAAGGCTGAGAACTAAAATGTCACCAGCTGAATGGTGGTCTGCTTATGGATCTTCAACTCCAAACCTCCAAAACTTTGCCATAAAAGTTCTTAGCCTCACTTGTAGTGCTACCGGTTGTGAGAGGAATTGGGGTGTTTTTCAACTACTTCATACAAAAAGAAGGAATAGATTGACTCAATGTCGATTGAACGACATGATATTTGTGAAATACAATCGCGCTCTGCAACGTCGATACAAGAGAAATGACACCTTCGATCCTATTTTGTTGAATGAAATTGATCAATGCAATGAGTGGCTGACTGGGAGAATGGAGGAGAACTCATCTGATACTGAAAATGATGATCTTGTGTTTGAAAATGATGACTTGACATGGGCTGAAGTTGGCGAGGCCGCAGGAGCTAATGATCCTTATTATGCAACTAGATCAACAGCTGCTTCAAGTAGATTTGAGAAAGGAAAAGGTATTGCTAGTGATTCTGGTGGACATGGTAATTCAAGAGCATCTCGCAAGACACCTAATAGTTCTCGTCCTATGACTTTGGTTGATGAGGATGAAGAGATGGAAGATGATTTTCTTGGAGCAGAGTATGAGGACACTCTTTTGGACAAGGATGATTATGAGTTCGATGATTCTGCTGGATATAACCAAATTCCAAGTATTCCTGCTCCTCTTGGCTTCGGGCCACCTCCAAGCTCTACCATGAGTCCCTATGGCACTACAATGGATGCAATGTATATGCATTTGCCTAATGCAGCCATGATGTATGCTCATCCCTATGAGCAGTTGAGAAATGGCCCTCTTCAGGCACAGTTCGTTCAACAACCCTTGAGCTTCGACTACTGCAGAAACGCTAGGTGCTCGTCTCTTTGTCAATCTTCCTCTCTCTATACCTTTTTTTTTTGTAGAACCTAG

Protein Analysis

509

Amino Acids

58.18

Weight (kDa)

6.17

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 210 - 277 4.9e-12 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AccB1I GGYRCC 1 cut(s) 305
AccII CGCG 1 cut(s) 834
AciI CCGC 1 cut(s) 1008
AclWI GGATC 4 cut(s) 321, 673, 866, 1016
AcsI RAATTY 3 cut(s) 28, 452, 1266
AcuI CTGAAG 3 cut(s) 248, 1014, 1403
AfiI CCNNNNNNNGG 4 cut(s) 97, 132, 290, 1420
AgeI ACCGGT 1 cut(s) 728
AhdI GACNNNNNGTC 1 cut(s) 795
AloI GAACNNNNNNTCC 2 cut(s) 513, 545
Alw21I GWGCWC 1 cut(s) 1478
Alw26I GTCTC 4 cut(s) 320, 536, 599, 1485
AlwI GGATC 4 cut(s) 321, 673, 866, 1016
AoxI GGCC 5 cut(s) 38, 416, 1005, 1298, 1411
ApeKI GCWGC 3 cut(s) 428, 1049, 1370
ApoI RAATTY 3 cut(s) 28, 452, 1266
ArsI GACNNNNNNTTYG 2 cut(s) 800, 832
AsiGI ACCGGT 1 cut(s) 728
Asp700I GAANNNNTTC 1 cut(s) 341
AspLEI GCGC 1 cut(s) 836
AspS9I GGNCC 3 cut(s) 239, 1298, 1412
AsuHPI GGTGA 1 cut(s) 630
AvaII GGWCC 1 cut(s) 239
BanI GGYRCC 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 1478
BbvI GCAGC 3 cut(s) 440, 1036, 1382
BccI CCATC 4 cut(s) 109, 263, 390, 1171
BcgI CGANNNNNNTGC 4 cut(s) 554, 588, 1232, 1266
BciVI GTATCC 1 cut(s) 287
BclI TGATCA 1 cut(s) 895
BcoDI GTCTC 4 cut(s) 320, 536, 599, 1485
BfaI CTAG 4 cut(s) 1038, 1086, 1470, 1528
BfmI CTRYAG 1 cut(s) 1459
BfuI GTATCC 1 cut(s) 287
BisI GCNGC 4 cut(s) 429, 1008, 1050, 1371
BlsI GCNGC 4 cut(s) 430, 1009, 1051, 1372
Bme18I GGWCC 1 cut(s) 239
BmeRI GACNNNNNGTC 1 cut(s) 795
BmgT120I GGNCC 3 cut(s) 239, 1298, 1412
BmiI GGNNCC 2 cut(s) 307, 531
BmrI ACTGGG 1 cut(s) 927
BmsI GCATC 3 cut(s) 562, 1127, 1333
BmuI ACTGGG 1 cut(s) 927
BplI GAGNNNNNCTC 4 cut(s) 268, 300, 920, 952
BpmI CTGGAG 1 cut(s) 183
Bpu10I CCTNAGC 1 cut(s) 321
BpuEI CTTGAG 2 cut(s) 531, 1465
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 2 cut(s) 309, 517
BsaWI WCCGGW 2 cut(s) 469, 728
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 132, 290, 1420
Bse118I RCCGGY 1 cut(s) 728
Bse1I ACTGG 1 cut(s) 922
Bse3DI GCAATG 2 cut(s) 910, 1353
BseDI CCNNGG 2 cut(s) 309, 517
BseGI GGATG 6 cut(s) 478, 577, 1174, 1234, 1348, 1387
BseLI CCNNNNNNNGG 4 cut(s) 97, 132, 290, 1420
BseMI GCAATG 2 cut(s) 910, 1353
BseMII CTCAG 1 cut(s) 614
BseNI ACTGG 1 cut(s) 922
BseRI GAGGAG 2 cut(s) 944, 1275
BseXI GCAGC 3 cut(s) 440, 1036, 1382
Bsh1236I CGCG 1 cut(s) 834
BshFI GGCC 5 cut(s) 40, 418, 1007, 1300, 1413
BshNI GGYRCC 1 cut(s) 305
BshTI ACCGGT 1 cut(s) 728
BsiHKAI GWGCWC 1 cut(s) 1478
BsiSI CCGG 2 cut(s) 470, 729
BslFI GGGAC 2 cut(s) 413, 1308
BslI CCNNNNNNNGG 4 cut(s) 97, 132, 290, 1420
BsmAI GTCTC 4 cut(s) 320, 536, 599, 1485
BsmBI CGTCTC 1 cut(s) 1485
BsmFI GGGAC 2 cut(s) 413, 1308
BsmI GAATGC 1 cut(s) 142
BsnI GGCC 5 cut(s) 40, 418, 1007, 1300, 1413
Bso31I GGTCTC 1 cut(s) 599
Bsp1286I GDGCHC 1 cut(s) 1478
Bsp143I GATC 8 cut(s) 313, 381, 665, 871, 895, 958, 1021, 1040
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 1 cut(s) 1008
BspANI GGCC 5 cut(s) 40, 418, 1007, 1300, 1413
BspCNI CTCAG 1 cut(s) 615
BspFNI CGCG 1 cut(s) 834
BspLI GGNNCC 2 cut(s) 307, 531
BspMAI CTGCAG 1 cut(s) 1463
BspPI GGATC 4 cut(s) 321, 673, 866, 1016
BspT107I GGYRCC 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 599
BsrDI GCAATG 2 cut(s) 910, 1353
BsrFI RCCGGY 1 cut(s) 728
BsrI ACTGG 1 cut(s) 922
BssAI RCCGGY 1 cut(s) 728
BssECI CCNNGG 2 cut(s) 309, 517
BssMI GATC 8 cut(s) 313, 381, 665, 871, 895, 958, 1021, 1040
BssT1I CCWWGG 2 cut(s) 309, 517
Bst4CI ACNGT 2 cut(s) 92, 1428
Bst6I CTCTTC 2 cut(s) 1167, 1422
BstC8I GCNNGC 4 cut(s) 42, 78, 426, 433
BstDEI CTNAG 4 cut(s) 257, 321, 623, 707
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 6 cut(s) 478, 577, 1174, 1234, 1348, 1387
BstFNI CGCG 1 cut(s) 834
BstHHI GCGC 1 cut(s) 836
BstKTI GATC 8 cut(s) 316, 384, 668, 874, 898, 961, 1024, 1043
BstMAI GTCTC 4 cut(s) 320, 536, 599, 1485
BstMBI GATC 8 cut(s) 313, 381, 665, 871, 895, 958, 1021, 1040
BstMWI GCNNNNNNNGC 1 cut(s) 1013
BstNSI RCATGY 2 cut(s) 224, 428
BstSFI CTRYAG 1 cut(s) 1459
BstUI CGCG 1 cut(s) 834
BstV1I GCAGC 3 cut(s) 440, 1036, 1382
BstX2I RGATCY 1 cut(s) 665
BstXI CCANNNNNNTGG 1 cut(s) 648
BstYI RGATCY 1 cut(s) 665
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 5 cut(s) 40, 418, 1007, 1300, 1413
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 6 cut(s) 478, 577, 1174, 1234, 1348, 1387
Cac8I GCNNGC 4 cut(s) 42, 78, 426, 433
CfoI GCGC 1 cut(s) 836
Cfr10I RCCGGY 1 cut(s) 728
Cfr13I GGNCC 3 cut(s) 239, 1298, 1412
CspAI ACCGGT 1 cut(s) 728
CviAII CATG 8 cut(s) 221, 310, 425, 811, 987, 1103, 1318, 1375
DdeI CTNAG 4 cut(s) 257, 321, 623, 707
DpnI GATC 8 cut(s) 315, 383, 667, 873, 897, 960, 1023, 1042
DpnII GATC 8 cut(s) 313, 381, 665, 871, 895, 958, 1021, 1040
DraI TTTAAA 1 cut(s) 580
DriI GACNNNNNGTC 1 cut(s) 795
Eam1104I CTCTTC 2 cut(s) 1167, 1422
Eam1105I GACNNNNNGTC 1 cut(s) 795
EarI CTCTTC 2 cut(s) 1167, 1422
Eco130I CCWWGG 2 cut(s) 309, 517
Eco31I GGTCTC 1 cut(s) 599
Eco47I GGWCC 1 cut(s) 239
Eco57I CTGAAG 3 cut(s) 248, 1014, 1403
EcoO109I RGGNCCY 1 cut(s) 239
EcoT14I CCWWGG 2 cut(s) 309, 517
EcoT22I ATGCAT 2 cut(s) 577, 1359
ErhI CCWWGG 2 cut(s) 309, 517
Esp3I CGTCTC 1 cut(s) 1485
FaeI CATG 8 cut(s) 224, 313, 428, 814, 990, 1106, 1321, 1378
FaqI GGGAC 2 cut(s) 413, 1308
FatI CATG 8 cut(s) 220, 309, 424, 810, 986, 1102, 1317, 1374
FbaI TGATCA 1 cut(s) 895
Fnu4HI GCNGC 4 cut(s) 429, 1008, 1050, 1371
FokI GGATG 6 cut(s) 485, 584, 1181, 1241, 1355, 1374
Fsp4HI GCNGC 4 cut(s) 429, 1008, 1050, 1371
FspBI CTAG 4 cut(s) 1038, 1086, 1470, 1528
GlaI GCGC 1 cut(s) 835
GluI GCNGC 4 cut(s) 429, 1008, 1050, 1371
GsuI CTGGAG 1 cut(s) 183
HaeIII GGCC 5 cut(s) 40, 418, 1007, 1300, 1413
HapII CCGG 2 cut(s) 470, 729
HhaI GCGC 1 cut(s) 836
Hin1II CATG 8 cut(s) 224, 313, 428, 814, 990, 1106, 1321, 1378
Hin6I GCGC 1 cut(s) 834
HinP1I GCGC 1 cut(s) 834
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 5 cut(s) 544, 790, 1091, 1247, 1321
HpaII CCGG 2 cut(s) 470, 729
HphI GGTGA 1 cut(s) 630
Hpy166II GTNNAC 3 cut(s) 15, 150, 1100
Hpy188I TCNGA 3 cut(s) 127, 228, 943
Hpy188III TCNNGA 3 cut(s) 449, 548, 1113
Hpy8I GTNNAC 3 cut(s) 15, 150, 1100
Hpy99I CGWCG 1 cut(s) 849
HpyAV CCTTC 3 cut(s) 516, 771, 877
HpyCH4III ACNGT 2 cut(s) 92, 1428
HpyCH4IV ACGT 1 cut(s) 844
HpyF10VI GCNNNNNNNGC 1 cut(s) 1013
HpyF3I CTNAG 4 cut(s) 257, 321, 623, 707
HpySE526I ACGT 1 cut(s) 844
Hsp92II CATG 8 cut(s) 224, 313, 428, 814, 990, 1106, 1321, 1378
HspAI GCGC 1 cut(s) 834
Ksp22I TGATCA 1 cut(s) 895
Kzo9I GATC 8 cut(s) 313, 381, 665, 871, 895, 958, 1021, 1040
LmnI GCTCC 3 cut(s) 1013, 1196, 1288
Lsp1109I GCAGC 3 cut(s) 440, 1036, 1382
LweI GCATC 3 cut(s) 562, 1127, 1333
MaeI CTAG 4 cut(s) 1038, 1086, 1470, 1528
MaeII ACGT 1 cut(s) 844
MaeIII GTNAC 1 cut(s) 636
MalI GATC 8 cut(s) 315, 383, 667, 873, 897, 960, 1023, 1042
MboI GATC 8 cut(s) 313, 381, 665, 871, 895, 958, 1021, 1040
MboII GAAGA 9 cut(s) 124, 220, 368, 405, 660, 1184, 1193, 1409, 1485
MflI RGATCY 1 cut(s) 665
MhlI GDGCHC 1 cut(s) 1478
MlyI GAGTC 3 cut(s) 538, 784, 1330
MmeI TCCRAC 1 cut(s) 549
Mph1103I ATGCAT 2 cut(s) 577, 1359
MroXI GAANNNNTTC 1 cut(s) 341
MseI TTAA 1 cut(s) 579
MslI CAYNNNNRTG 3 cut(s) 126, 1337, 1392
MspA1I CMGCKG 3 cut(s) 431, 644, 1049
MspI CCGG 2 cut(s) 470, 729
Mva1269I GAATGC 1 cut(s) 142
MvnI CGCG 1 cut(s) 834
MwoI GCNNNNNNNGC 1 cut(s) 1013
NcoI CCATGG 1 cut(s) 309
NdeII GATC 8 cut(s) 313, 381, 665, 871, 895, 958, 1021, 1040
NlaIII CATG 8 cut(s) 224, 313, 428, 814, 990, 1106, 1321, 1378
NlaIV GGNNCC 2 cut(s) 307, 531
NmuCI GTSAC 1 cut(s) 636
NsiI ATGCAT 2 cut(s) 577, 1359
NspI RCATGY 2 cut(s) 224, 428
PaeI GCATGC 1 cut(s) 428
PctI GAATGC 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 341
PfeI GAWTC 2 cut(s) 1091, 1247
PinAI ACCGGT 1 cut(s) 728
PkrI GCNGC 4 cut(s) 430, 1009, 1051, 1372
PleI GAGTC 3 cut(s) 538, 784, 1329
PpsI GAGTC 3 cut(s) 538, 784, 1329
PpuMI RGGWCCY 1 cut(s) 239
PsiI TTATAA 1 cut(s) 351
Psp5II RGGWCCY 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 307, 531
PspPI GGNCC 3 cut(s) 239, 1298, 1412
PspPPI RGGWCCY 1 cut(s) 239
PstI CTGCAG 1 cut(s) 1463
PsuI RGATCY 1 cut(s) 665
PvuII CAGCTG 3 cut(s) 431, 644, 1049
RseI CAYNNNNRTG 3 cut(s) 126, 1337, 1392
SaqAI TTAA 1 cut(s) 579
SatI GCNGC 4 cut(s) 429, 1008, 1050, 1371
Sau3AI GATC 8 cut(s) 313, 381, 665, 871, 895, 958, 1021, 1040
Sau96I GGNCC 3 cut(s) 239, 1298, 1412
SchI GAGTC 3 cut(s) 538, 784, 1330
SduI GDGCHC 1 cut(s) 1478
SfaNI GCATC 3 cut(s) 562, 1127, 1333
SfcI CTRYAG 1 cut(s) 1459
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 3 cut(s) 126, 1337, 1392
SmlI CTYRAG 2 cut(s) 546, 1444
SmoI CTYRAG 2 cut(s) 546, 1444
SphI GCATGC 1 cut(s) 428
SsiI CCGC 1 cut(s) 1008
SspMI CTAG 4 cut(s) 1038, 1086, 1470, 1528
StyI CCWWGG 2 cut(s) 309, 517
TaaI ACNGT 2 cut(s) 92, 1428
TaiI ACGT 1 cut(s) 847
TaqI TCGA 5 cut(s) 799, 847, 870, 1242, 1452
TauI GCSGC 1 cut(s) 1010
TfiI GAWTC 2 cut(s) 1091, 1247
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TseFI GTSAC 1 cut(s) 636
TseI GCWGC 3 cut(s) 428, 1049, 1370
Tsp45I GTSAC 1 cut(s) 636
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 3 cut(s) 28, 452, 1266
XceI RCATGY 2 cut(s) 224, 428
XcmI CCANNNNNNNNNTGG 1 cut(s) 648
XmnI GAANNNNTTC 1 cut(s) 341
XspI CTAG 4 cut(s) 1038, 1086, 1470, 1528
Zsp2I ATGCAT 2 cut(s) 577, 1359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.