Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002052

Physical Location & Seq

Genomic Coordinates Reverse (-)

10805780 .. 10808617

Gene Structure 2838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16931.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAGTTCTAGTGATGGGACACAAAAGAAAGATTTTGCTTGGCAATGGACTAAACCAATTCCTGGTCACTTGACATATTTTCTGTGTGCATTTTGTGATCTGAAAAATACCGGTGGCATCTTCCGATTCAAGCAGCATTTAGTTGGCACCCGCAAAGGAATTAGACCTTGTCCCAAGGTTCCACCAAATGTGAAAGATTTGTGTTCTCAAGCACTTCAAAGGAATGATAATCAGAAAAAAGCAAAGGTTGCCGTGCTTCGGGAGATAGGGGGATTAGAAAATTTAGAAGAAGAAGATGCACTAGATCATGAAGTGACAAATGTGACTACAACCCTTGCAAGTGATTGTGGTAGTGCTCAAACTCCTATTGTTGGTAGTTCTCAAAGTCCACTTGGTGGTGGTGGTTCTATGGGTCAACCAAAGGCTAGAGGACCGATGGACAACTATGTATCCTCAAAAGCTCGGCAAACTACGTTGAATACCTCTTACAAGAAACAAGAGAGGCGTAATATTCACACTAAGAAGAGGAATAGACTTGAGCATAAGAGGTTGCATGCCTTAGTTTATGTGAAGTATAATATTGCTCTAAGAGATAGGACTTTGAAGAGAAACGCTACAATGACCGATCCTATTGTTGTGGAAGAGATTGAATCGGATGATGAATGGATAACCGAGATAGAGGATCCGGTTCTTCCCACCGATCCACATTGGATTGAGGACAATGTGGAAGAATTGACATTGGATGATGGAGCGATCCGAAATGTGCCAAGTGGTAAGAGAAAAGCACCAAGAAAATCAATGCTTCTTGATGACATTGTAGATGATGATACTAGAAGTAATCGGTTTGATGATACTAATCCTCTCTTCCAATACGGTGATGATGATGATGAAGGTGGTGATGATGATGATGGTGATGATGGGGGTGATAGTGATGGTGATGATAGTTTGGATGGAGATATCTTAATTGATGATGATGATGACTTTGAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

331

Amino Acids

36.82

Weight (kDa)

4.7

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36095 AT5G33406
fragaria_vesca	FvH4_2g19761 FvH4_2g31910 FvH4_3g32805 FvH4_3g33921 FvH4_3g33922 FvH4_4g11993 FvH4_5g36511 FvH4_6g16931 FvH4_6g16931
malus_domestica	MD01G1106300.v1.1 MD01G1106700.v1.1 MD08G1077600.v1.1
pyrus_communis	pycom01g13300 pycom06g05900 pycom12g14200 pycom13g27730 pycom16g16790
rosa_chinensis	RchiOBHm_Chr1g0361961 RchiOBHm_Chr1g0361981 RchiOBHm_Chr2g0141951 RchiOBHm_Chr7g0218361
rosa_multiflora	Rmu_co8147950.1_g000001 Rmu_co8356159.1_g000001 Rmu_sc0000117.1_g000022 Rmu_sc0007718.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097000 Rroxscaffold_2G00126330 Rroxscaffold_4G00304630 Rroxscaffold_5G00366570 Rroxscaffold_5G00366580
rosa_rugosa	Rorug03G0268800 Rorug03G0268900 Rorug05G0477700 Rorug05G0477800 RorugPtG0003500.1
rosa_samantha	Rh1AG259100 Rh4AG027200 Rh7CG313700
rosa_wichuraiana	Rw0G004680 Rw1G026970 Rw4G019360 Rw6G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccB7I	CCANNNNNTGG	2 cut(s)	62, 395
AciI	CCGC	1 cut(s)	151
AclWI	GGATC	5 cut(s)	620, 677, 690, 695, 748
AcsI	RAATTY	1 cut(s)	280
AdeI	CACNNNGTG	1 cut(s)	395
AfiI	CCNNNNNNNGG	4 cut(s)	62, 258, 371, 395
AgeI	ACCGGT	1 cut(s)	110
AgsI	TTSAA	6 cut(s)	130, 218, 478, 604, 650, 986
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	1 cut(s)	461
AluI	AGCT	1 cut(s)	461
Alw21I	GWGCWC	1 cut(s)	358
AlwI	GGATC	5 cut(s)	620, 677, 690, 695, 748
ApeKI	GCWGC	1 cut(s)	133
ApoI	RAATTY	1 cut(s)	280
AsiGI	ACCGGT	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	431
AsuHPI	GGTGA	5 cut(s)	887, 908, 923, 935, 947
AvaII	GGWCC	1 cut(s)	431
BamHI	GGATCC	1 cut(s)	682
BanI	GGYRCC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	7 cut(s)	8, 430, 740, 902, 911, 926, 944
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	63
BciVI	GTATCC	1 cut(s)	460
BfaI	CTAG	4 cut(s)	9, 302, 426, 831
BfuI	GTATCC	1 cut(s)	460
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	3 cut(s)	148, 180, 684
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	2 cut(s)	126, 286
BpuEI	CTTGAG	2 cut(s)	192, 557
BsaBI	GATNNNNATC	1 cut(s)	855
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	2 cut(s)	110, 685
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 258, 371, 395
Bse118I	RCCGGY	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	50
Bse8I	GATNNNNATC	1 cut(s)	855
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	3 cut(s)	661, 748, 955
BseJI	GATNNNNATC	1 cut(s)	855
BseLI	CCNNNNNNNGG	4 cut(s)	62, 258, 371, 395
BseMI	GCAATG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	145
BshNI	GGYRCC	1 cut(s)	146
BshTI	ACCGGT	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	358
BsiSI	CCGG	2 cut(s)	111, 686
BslFI	GGGAC	2 cut(s)	31, 156
BslI	CCNNNNNNNGG	4 cut(s)	62, 258, 371, 395
BsmFI	GGGAC	2 cut(s)	31, 156
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	6 cut(s)	97, 304, 625, 682, 700, 753
BspACI	CCGC	1 cut(s)	151
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	3 cut(s)	148, 180, 684
BspPI	GGATC	5 cut(s)	620, 677, 690, 695, 748
BspT107I	GGYRCC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	6 cut(s)	97, 304, 625, 682, 700, 753
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	875
Bst6I	CTCTTC	4 cut(s)	518, 599, 636, 869
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	3 cut(s)	519, 559, 587
BstF5I	GGATG	3 cut(s)	661, 748, 955
BstKTI	GATC	6 cut(s)	100, 307, 628, 685, 703, 756
BstMBI	GATC	6 cut(s)	97, 304, 625, 682, 700, 753
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	1 cut(s)	63
BstNSI	RCATGY	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	145
BstX2I	RGATCY	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	682
BsuI	GTATCC	1 cut(s)	460
BtsCI	GGATG	3 cut(s)	661, 748, 955
Cac8I	GCNNGC	1 cut(s)	555
CciI	TCATGA	1 cut(s)	307
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	431
CspAI	ACCGGT	1 cut(s)	110
CviAII	CATG	3 cut(s)	308, 554, 990
CviJI	RGCY	2 cut(s)	425, 461
CviKI_1	RGCY	2 cut(s)	425, 461
DdeI	CTNAG	3 cut(s)	519, 559, 587
DpnI	GATC	6 cut(s)	99, 306, 627, 684, 702, 755
DpnII	GATC	6 cut(s)	97, 304, 625, 682, 700, 753
DraIII	CACNNNGTG	1 cut(s)	395
Eam1104I	CTCTTC	4 cut(s)	518, 599, 636, 869
EarI	CTCTTC	4 cut(s)	518, 599, 636, 869
Eco130I	CCWWGG	1 cut(s)	174
Eco32I	GATATC	1 cut(s)	958
Eco47I	GGWCC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	958
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	3 cut(s)	311, 557, 993
FaiI	YATR	9 cut(s)	76, 309, 410, 447, 543, 555, 567, 576, 991
FaqI	GGGAC	2 cut(s)	31, 156
FatI	CATG	3 cut(s)	307, 553, 989
FauI	CCCGC	1 cut(s)	158
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	3 cut(s)	668, 755, 962
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	4 cut(s)	9, 302, 426, 831
GluI	GCNGC	1 cut(s)	134
HapII	CCGG	2 cut(s)	111, 686
Hin1II	CATG	3 cut(s)	311, 557, 993
HincII	GTYRAC	1 cut(s)	416
HindII	GTYRAC	1 cut(s)	416
HinfI	GANTC	2 cut(s)	126, 650
HpaII	CCGG	2 cut(s)	111, 686
HphI	GGTGA	5 cut(s)	887, 908, 923, 935, 947
Hpy166II	GTNNAC	2 cut(s)	389, 416
Hpy188I	TCNGA	5 cut(s)	102, 125, 234, 655, 758
Hpy188III	TCNNGA	3 cut(s)	260, 308, 806
Hpy8I	GTNNAC	2 cut(s)	389, 416
HpyAV	CCTTC	1 cut(s)	884
HpyCH4III	ACNGT	1 cut(s)	875
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	4 cut(s)	89, 299, 338, 553
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	3 cut(s)	519, 559, 587
HpySE526I	ACGT	1 cut(s)	473
Hsp92II	CATG	3 cut(s)	311, 557, 993
Kzo9I	GATC	6 cut(s)	97, 304, 625, 682, 700, 753
LmnI	GCTCC	1 cut(s)	749
LpnPI	CCDG	4 cut(s)	48, 75, 124, 699
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	2 cut(s)	126, 286
MaeI	CTAG	4 cut(s)	9, 302, 426, 831
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	3 cut(s)	65, 313, 322
MalI	GATC	6 cut(s)	99, 306, 627, 684, 702, 755
MboI	GATC	6 cut(s)	97, 304, 625, 682, 700, 753
MflI	RGATCY	1 cut(s)	682
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	5 cut(s)	57, 159, 280, 731, 963
MnlI	CCTC	9 cut(s)	422, 463, 493, 495, 519, 540, 673, 709, 870
MseI	TTAA	1 cut(s)	962
MspI	CCGG	2 cut(s)	111, 686
MspR9I	CCNGG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	6 cut(s)	97, 304, 625, 682, 700, 753
NlaIII	CATG	3 cut(s)	311, 557, 993
NlaIV	GGNNCC	3 cut(s)	148, 180, 684
NmeAIII	GCCGAG	1 cut(s)	442
NmuCI	GTSAC	3 cut(s)	65, 313, 322
NspI	RCATGY	1 cut(s)	557
PaeI	GCATGC	1 cut(s)	557
PagI	TCATGA	1 cut(s)	307
PfeI	GAWTC	2 cut(s)	126, 650
PflFI	GACNNNGTC	1 cut(s)	168
PflMI	CCANNNNNTGG	2 cut(s)	62, 395
PinAI	ACCGGT	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	3 cut(s)	148, 180, 684
PspPI	GGNCC	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	682
PsyI	GACNNNGTC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	962
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	6 cut(s)	97, 304, 625, 682, 700, 753
Sau96I	GGNCC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	8 cut(s)	169, 180, 249, 463, 476, 485, 551, 895
SfaNI	GCATC	2 cut(s)	126, 286
SinI	GGWCC	1 cut(s)	431
SmlI	CTYRAG	2 cut(s)	207, 536
SmoI	CTYRAG	2 cut(s)	207, 536
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	5 cut(s)	57, 159, 280, 731, 963
SsiI	CCGC	1 cut(s)	151
SspI	AATATT	2 cut(s)	511, 580
SspMI	CTAG	4 cut(s)	9, 302, 426, 831
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	875
TaiI	ACGT	1 cut(s)	476
TaqII	GACCGA	2 cut(s)	448, 638
TasI	AATT	5 cut(s)	57, 159, 280, 731, 963
TfiI	GAWTC	2 cut(s)	126, 650
Tru1I	TTAA	1 cut(s)	962
Tru9I	TTAA	1 cut(s)	962
TseFI	GTSAC	3 cut(s)	65, 313, 322
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	3 cut(s)	65, 313, 322
TspDTI	ATGAA	3 cut(s)	324, 675, 903
Tth111I	GACNNNGTC	1 cut(s)	168
Van91I	CCANNNNNTGG	2 cut(s)	62, 395
VpaK11BI	GGWCC	1 cut(s)	431
XapI	RAATTY	1 cut(s)	280
XceI	RCATGY	1 cut(s)	557
XspI	CTAG	4 cut(s)	9, 302, 426, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.