Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8147950.1

Orthogroup ID

OG0002052

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 613

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8147950.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

gtaacaatgagttctagtactactactagtgaaacaacaaagaaagatcatgcttggaaatggactaaaccaattccaggggagttgaactactttttgtgtgcgttttgtgatcaaaaaaataccggtggcattctcagattcaagcagcatttagttggcacccataaaggaatcaaagcttgtcaaaaagtcccaccaaatgtgaaggattggtgcactttagcacttcaaagaaatgaagaagagaaaaaagcaaagattacggtgcgtagggagatagggggattggagccactagaagaagaagatgcacatgttcaagcagtggaaaatgtggctacaagtgagagtggtagtgctcaaactccacttggtggtggttgtacgagtcaaccaaagtcaagaggaccgatggacaagtttgtgtcctcaaaagctcggcaagctacattggattcttcattcaagaaagaagaaagaataatgtgtgtagggcgattgggcggttgttctatactagtgccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

176

Amino Acids

19.28

Weight (kDa)

8.97

Isoelectric Point (pI)

51.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36095 AT5G33406
fragaria_vesca	FvH4_2g19761 FvH4_2g31910 FvH4_3g32805 FvH4_3g33921 FvH4_3g33922 FvH4_4g11993 FvH4_5g36511 FvH4_6g16931 FvH4_6g16931
malus_domestica	MD01G1106300.v1.1 MD01G1106700.v1.1 MD08G1077600.v1.1
pyrus_communis	pycom01g13300 pycom06g05900 pycom12g14200 pycom13g27730 pycom16g16790
rosa_chinensis	RchiOBHm_Chr1g0361961 RchiOBHm_Chr1g0361981 RchiOBHm_Chr2g0141951 RchiOBHm_Chr7g0218361
rosa_multiflora	Rmu_co8147950.1_g000001 Rmu_co8356159.1_g000001 Rmu_sc0000117.1_g000022 Rmu_sc0007718.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097000 Rroxscaffold_2G00126330 Rroxscaffold_4G00304630 Rroxscaffold_5G00366570 Rroxscaffold_5G00366580
rosa_rugosa	Rorug03G0268800 Rorug03G0268900 Rorug05G0477700 Rorug05G0477800 RorugPtG0003500.1
rosa_samantha	Rh1AG259100 Rh4AG027200 Rh7CG313700
rosa_wichuraiana	Rw0G004680 Rw1G026970 Rw4G019360 Rw6G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AccB7I	CCANNNNNTGG	1 cut(s)	377
AciI	CCGC	1 cut(s)	507
AdeI	CACNNNGTG	1 cut(s)	377
AfaI	GTAC	2 cut(s)	19, 388
AfiI	CCNNNNNNNGG	2 cut(s)	77, 377
AflIII	ACRYGT	1 cut(s)	316
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	5 cut(s)	88, 145, 233, 323, 469
AhlI	ACTAGT	2 cut(s)	26, 520
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	3 cut(s)	182, 440, 449
AluI	AGCT	3 cut(s)	182, 440, 449
Alw21I	GWGCWC	2 cut(s)	221, 364
Alw44I	GTGCAC	1 cut(s)	217
ApaLI	GTGCAC	1 cut(s)	217
ApeKI	GCWGC	1 cut(s)	148
AsiGI	ACCGGT	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	410
BaeGI	GKGCMC	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	161
Bbv12I	GWGCWC	2 cut(s)	221, 364
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	409
BciT130I	CCWGG	1 cut(s)	78
BclI	TGATCA	1 cut(s)	112
BcuI	ACTAGT	2 cut(s)	26, 520
BfaI	CTAG	4 cut(s)	15, 27, 299, 521
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
BmcAI	AGTACT	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	2 cut(s)	163, 294
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	77
BsaWI	WCCGGW	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 377
Bse118I	RCCGGY	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	77
BseLI	CCNNNNNNNGG	2 cut(s)	77, 377
BseMII	CTCAG	1 cut(s)	151
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	160
BshNI	GGYRCC	1 cut(s)	161
BshTI	ACCGGT	1 cut(s)	125
BsiHKAI	GWGCWC	2 cut(s)	221, 364
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	77, 377
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	221, 364
Bsp143I	GATC	2 cut(s)	46, 112
BspACI	CCGC	1 cut(s)	507
BspCNI	CTCAG	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	163, 294
BspT107I	GGYRCC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	2 cut(s)	46, 112
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	1 cut(s)	137
BstKTI	GATC	2 cut(s)	49, 115
BstMBI	GATC	2 cut(s)	46, 112
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	160
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	447
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	410
Csp6I	GTAC	2 cut(s)	18, 387
CspAI	ACCGGT	1 cut(s)	125
CviAII	CATG	2 cut(s)	50, 317
CviJI	RGCY	5 cut(s)	182, 295, 341, 440, 449
CviKI_1	RGCY	5 cut(s)	182, 295, 341, 440, 449
CviQI	GTAC	2 cut(s)	18, 387
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	2 cut(s)	48, 114
DpnII	GATC	2 cut(s)	46, 112
DraIII	CACNNNGTG	1 cut(s)	377
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	410
EcoRII	CCWGG	1 cut(s)	76
FaeI	CATG	2 cut(s)	53, 320
FaiI	YATR	5 cut(s)	51, 168, 318, 518, 529
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	2 cut(s)	49, 316
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	149
FspBI	CTAG	4 cut(s)	15, 27, 299, 521
GluI	GCNGC	1 cut(s)	149
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	2 cut(s)	53, 320
HincII	GTYRAC	1 cut(s)	395
HindII	GTYRAC	1 cut(s)	395
HindIII	AAGCTT	1 cut(s)	180
HinfI	GANTC	4 cut(s)	141, 174, 391, 458
HpaII	CCGG	1 cut(s)	126
Hpy166II	GTNNAC	2 cut(s)	219, 395
Hpy188I	TCNGA	1 cut(s)	140
Hpy188III	TCNNGA	2 cut(s)	405, 469
Hpy8I	GTNNAC	2 cut(s)	219, 395
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	2 cut(s)	219, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	2 cut(s)	53, 320
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	46, 112
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	3 cut(s)	63, 90, 139
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	4 cut(s)	15, 27, 299, 521
MalI	GATC	2 cut(s)	48, 114
MboI	GATC	2 cut(s)	46, 112
MboII	GAAGA	7 cut(s)	254, 257, 314, 317, 320, 453, 488
MhlI	GDGCHC	2 cut(s)	221, 364
MluCI	AATT	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	400
MnlI	CCTC	2 cut(s)	401, 442
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	446
NdeII	GATC	2 cut(s)	46, 112
NlaIII	CATG	2 cut(s)	53, 320
NlaIV	GGNNCC	2 cut(s)	163, 294
NmeAIII	GCCGAG	1 cut(s)	421
NspI	RCATGY	1 cut(s)	320
PciI	ACATGT	1 cut(s)	316
PctI	GAATGC	1 cut(s)	132
PfeI	GAWTC	3 cut(s)	141, 174, 458
PflMI	CCANNNNNTGG	1 cut(s)	377
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	150
PleI	GAGTC	1 cut(s)	399
PpsI	GAGTC	1 cut(s)	399
PscI	ACATGT	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	163, 294
PspPI	GGNCC	1 cut(s)	410
RsaI	GTAC	2 cut(s)	19, 388
RsaNI	GTAC	2 cut(s)	18, 387
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	2 cut(s)	46, 112
Sau96I	GGNCC	1 cut(s)	410
ScaI	AGTACT	1 cut(s)	19
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	2 cut(s)	221, 364
SetI	ASST	3 cut(s)	184, 442, 451
SfaNI	GCATC	1 cut(s)	301
SinI	GGWCC	1 cut(s)	410
SpeI	ACTAGT	2 cut(s)	26, 520
Sse9I	AATT	1 cut(s)	72
SsiI	CCGC	1 cut(s)	507
SspMI	CTAG	4 cut(s)	15, 27, 299, 521
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	268
TaqII	GACCGA	1 cut(s)	427
TasI	AATT	1 cut(s)	72
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	3 cut(s)	141, 174, 458
TscAI	CASTG	1 cut(s)	333
TseI	GCWGC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	255, 453
TspRI	CASTG	1 cut(s)	333
Van91I	CCANNNNNTGG	1 cut(s)	377
VneI	GTGCAC	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	410
XceI	RCATGY	1 cut(s)	320
XspI	CTAG	4 cut(s)	15, 27, 299, 521
ZrmI	AGTACT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.