Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002052

Physical Location & Seq

Genomic Coordinates Forward (+)

16698268 .. 16701108

Gene Structure 2841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g19761.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGAGTTCTAGTGATAGGACACAGAAGAAAGATTTTGCTTGGCAATGGACTAAACCAATTCCTGGTCACTTGACATATTTTCTGTGTGCATTTTGTGATCTGAAAAATACCGGTGGCATCTTCCGATTCAAGCAGCATTTAGTTGGTACCCGCAAAGGAATTAGACCTTGTCCCAAGGTTCCACCAAATGTGAAAGATTTGTGTTCTCAAGCACTTCAAAGGAATGATAATCAGAAAAAAGCAAAGGTTGCCATGCTTCGGGAGATAGGGGGTTTAGAAAATTTAGAAGAAGAAGATGCCCTAGATCATGAAGTGACAAATCAAAAGGCAGCTCTTATTAGTATGTTTCAATCCAAAGAATGGCATGATTGTGGTTGTACAAAACATAAAGATGCTTATGATGTGAAGAAGTATATCCTCCGTGATGGAAACTTTTGGAACCATATTGCCTATTGCATCAAGAGTGTTTTGCCTCTTGTTTGTGTCTTAAGAGAGGTTGATTCGGAAGTGAGACCCGTTATGGGATTTATTTTTGAGTTGATGGATGCCGCAAAAGACAAGATTGCTAGTAATCTTGGCAATGTGGAAGCGAAGTATGCACCTATTTGGAAGAGAATAGATAATAGGTGGAGTCCACAACTTCATCAACCATTGCATGCGGCGGGTTATTACTTGAACCCTCAATTCCGATATGAAGAAAATTTTAAAGATACCGAGCATGTGAAGAAGGGTTTGGAAGATTGCATGGATAGGATGCTTGATGGTGATGCTCGTATCCAAGCGGAAATACAATTGGACCTTTATGAGCGAAAGCTTGGGAAGTTCGGAAGTGCAATGGCCGAATCTACTAGAAAAATTCGATCACCCGTTTATGTGAAGTATAACATTGCTCTAAGAGATAGGACTTTGAAGAGAAGCGCTACAATGACCGATCCTATTGTTGTGGAAGAGATTGAATCGGATGATGAATGGATAACCGAGATAGAGGATCCGGTTCTTCCCACCGATCCACATTGGATTGAGAACAATGTGGAAGAATTGACATTGGATGATGGAGCGATCCGAAATGTGCCAAGTGGTAAGAGAAAGGCACCAAGAAAATCAATGCTTCTTGATGACATTGTAGATGATGATACTAGAAGTACTATGTTTGATGACACTAATCCTCTTTTCCAACACGGTGATGATGATGATGAAGGTGGTGATGATGATGATGATGATGGTGATGGGGGTGATAGTGATAGTGGTGATAGTTTGGATGGAGATATCTTAATTGATGATGATGATGATTTTGAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

434

Amino Acids

49.41

Weight (kDa)

4.77

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36095 AT5G33406
fragaria_vesca	FvH4_2g19761 FvH4_2g31910 FvH4_3g32805 FvH4_3g33921 FvH4_3g33922 FvH4_4g11993 FvH4_5g36511 FvH4_6g16931 FvH4_6g16931
malus_domestica	MD01G1106300.v1.1 MD01G1106700.v1.1 MD08G1077600.v1.1
pyrus_communis	pycom01g13300 pycom06g05900 pycom12g14200 pycom13g27730 pycom16g16790
rosa_chinensis	RchiOBHm_Chr1g0361961 RchiOBHm_Chr1g0361981 RchiOBHm_Chr2g0141951 RchiOBHm_Chr7g0218361
rosa_multiflora	Rmu_co8147950.1_g000001 Rmu_co8356159.1_g000001 Rmu_sc0000117.1_g000022 Rmu_sc0007718.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097000 Rroxscaffold_2G00126330 Rroxscaffold_4G00304630 Rroxscaffold_5G00366570 Rroxscaffold_5G00366580
rosa_rugosa	Rorug03G0268800 Rorug03G0268900 Rorug05G0477700 Rorug05G0477800 RorugPtG0003500.1
rosa_samantha	Rh1AG259100 Rh4AG027200 Rh7CG313700
rosa_wichuraiana	Rw0G004680 Rw1G026970 Rw4G019360 Rw6G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	2 cut(s)	146, 1090
AccB7I	CCANNNNNTGG	2 cut(s)	62, 360
AciI	CCGC	5 cut(s)	151, 549, 659, 662, 782
AclWI	GGATC	5 cut(s)	926, 983, 996, 1001, 1054
AcoI	YGGCCR	1 cut(s)	837
AcsI	RAATTY	3 cut(s)	280, 700, 855
AfaI	GTAC	3 cut(s)	148, 379, 1144
AfeI	AGCGCT	1 cut(s)	919
AfiI	CCNNNNNNNGG	4 cut(s)	62, 258, 360, 521
AflII	CTTAAG	1 cut(s)	487
AgeI	ACCGGT	1 cut(s)	110
AgsI	TTSAA	7 cut(s)	130, 218, 350, 676, 910, 956, 1295
AjnI	CCWGG	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	2 cut(s)	716, 748
AluBI	AGCT	2 cut(s)	332, 814
AluI	AGCT	2 cut(s)	332, 814
Alw26I	GTCTC	1 cut(s)	505
AlwI	GGATC	5 cut(s)	926, 983, 996, 1001, 1054
Aor51HI	AGCGCT	1 cut(s)	919
AoxI	GGCC	1 cut(s)	837
ApeKI	GCWGC	2 cut(s)	133, 329
ApoI	RAATTY	3 cut(s)	280, 700, 855
AsiGI	ACCGGT	1 cut(s)	110
Asp718I	GGTACC	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	920
AspS9I	GGNCC	1 cut(s)	796
AsuHPI	GGTGA	7 cut(s)	776, 855, 1193, 1214, 1235, 1244, 1259
AvaII	GGWCC	1 cut(s)	796
BamHI	GGATCC	1 cut(s)	988
BanI	GGYRCC	2 cut(s)	146, 1090
BbvI	GCAGC	2 cut(s)	145, 341
BccI	CCATC	7 cut(s)	419, 535, 755, 1046, 1214, 1220, 1253
BciT130I	CCWGG	1 cut(s)	63
BciVI	GTATCC	1 cut(s)	785
BcoDI	GTCTC	1 cut(s)	505
BfaI	CTAG	5 cut(s)	9, 302, 567, 849, 1137
BfoI	RGCGCY	1 cut(s)	921
BfrI	CTTAAG	1 cut(s)	487
BfuI	GTATCC	1 cut(s)	785
BisI	GCNGC	4 cut(s)	134, 330, 549, 660
BlsI	GCNGC	4 cut(s)	135, 331, 550, 661
BmcAI	AGTACT	1 cut(s)	1144
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	796
BmgT120I	GGNCC	1 cut(s)	796
BmiI	GGNNCC	5 cut(s)	148, 180, 440, 990, 1092
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	7 cut(s)	126, 286, 382, 465, 535, 744, 757
BpuEI	CTTGAG	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	505
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	2 cut(s)	110, 991
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 258, 360, 521
Bse118I	RCCGGY	1 cut(s)	110
Bse3DI	GCAATG	5 cut(s)	50, 586, 650, 840, 885
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	5 cut(s)	550, 759, 967, 1054, 1264
BseLI	CCNNNNNNNGG	4 cut(s)	62, 258, 360, 521
BseMI	GCAATG	5 cut(s)	50, 586, 650, 840, 885
BseXI	GCAGC	2 cut(s)	145, 341
BshFI	GGCC	1 cut(s)	839
BshNI	GGYRCC	2 cut(s)	146, 1090
BshTI	ACCGGT	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	111, 992
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	4 cut(s)	62, 258, 360, 521
BsmAI	GTCTC	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	839
Bso31I	GGTCTC	1 cut(s)	505
Bsp1407I	TGTACA	1 cut(s)	377
Bsp143I	GATC	7 cut(s)	97, 304, 860, 931, 988, 1006, 1059
BspACI	CCGC	5 cut(s)	151, 549, 659, 662, 782
BspANI	GGCC	1 cut(s)	839
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	5 cut(s)	148, 180, 440, 990, 1092
BspPI	GGATC	5 cut(s)	926, 983, 996, 1001, 1054
BspT107I	GGYRCC	2 cut(s)	146, 1090
BspTI	CTTAAG	1 cut(s)	487
BspTNI	GGTCTC	1 cut(s)	505
BsrDI	GCAATG	5 cut(s)	50, 586, 650, 840, 885
BsrFI	RCCGGY	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	377
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	7 cut(s)	97, 304, 860, 931, 988, 1006, 1059
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	1181
Bst6I	CTCTTC	3 cut(s)	605, 905, 942
BstAFI	CTTAAG	1 cut(s)	487
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstAUI	TGTACA	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	1 cut(s)	893
BstF5I	GGATG	5 cut(s)	550, 759, 967, 1054, 1264
BstH2I	RGCGCY	1 cut(s)	921
BstHHI	GCGC	1 cut(s)	920
BstKTI	GATC	7 cut(s)	100, 307, 863, 934, 991, 1009, 1062
BstMAI	GTCTC	1 cut(s)	505
BstMBI	GATC	7 cut(s)	97, 304, 860, 931, 988, 1006, 1059
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 596
BstNI	CCWGG	1 cut(s)	63
BstNSI	RCATGY	2 cut(s)	659, 722
BstSCI	CCNGG	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	145, 341
BstX2I	RGATCY	1 cut(s)	988
BstYI	RGATCY	1 cut(s)	988
BsuI	GTATCC	1 cut(s)	785
BsuRI	GGCC	1 cut(s)	839
BtsCI	GGATG	5 cut(s)	550, 759, 967, 1054, 1264
Cac8I	GCNNGC	1 cut(s)	657
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	1 cut(s)	920
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	796
Csp6I	GTAC	3 cut(s)	147, 378, 1143
CspAI	ACCGGT	1 cut(s)	110
CviAII	CATG	7 cut(s)	253, 308, 365, 656, 719, 745, 1299
CviJI	RGCY	3 cut(s)	332, 814, 839
CviKI_1	RGCY	3 cut(s)	332, 814, 839
CviQI	GTAC	3 cut(s)	147, 378, 1143
DdeI	CTNAG	1 cut(s)	893
DpnI	GATC	7 cut(s)	99, 306, 862, 933, 990, 1008, 1061
DpnII	GATC	7 cut(s)	97, 304, 860, 931, 988, 1006, 1059
DraI	TTTAAA	1 cut(s)	706
EaeI	YGGCCR	1 cut(s)	837
Eam1104I	CTCTTC	3 cut(s)	605, 905, 942
EarI	CTCTTC	3 cut(s)	605, 905, 942
Eco130I	CCWWGG	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	505
Eco32I	GATATC	1 cut(s)	1267
Eco47I	GGWCC	1 cut(s)	796
Eco47III	AGCGCT	1 cut(s)	919
EcoRII	CCWGG	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	1267
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	7 cut(s)	256, 311, 368, 659, 722, 748, 1302
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	7 cut(s)	252, 307, 364, 655, 718, 744, 1298
FauI	CCCGC	2 cut(s)	158, 655
Fnu4HI	GCNGC	4 cut(s)	134, 330, 549, 660
FokI	GGATG	5 cut(s)	557, 766, 974, 1061, 1271
Fsp4HI	GCNGC	4 cut(s)	134, 330, 549, 660
FspBI	CTAG	5 cut(s)	9, 302, 567, 849, 1137
GlaI	GCGC	1 cut(s)	919
GluI	GCNGC	4 cut(s)	134, 330, 549, 660
HaeII	RGCGCY	1 cut(s)	921
HaeIII	GGCC	1 cut(s)	839
HapII	CCGG	2 cut(s)	111, 992
HhaI	GCGC	1 cut(s)	920
Hin1II	CATG	7 cut(s)	256, 311, 368, 659, 722, 748, 1302
Hin6I	GCGC	1 cut(s)	918
HinP1I	GCGC	1 cut(s)	918
HindIII	AAGCTT	1 cut(s)	812
HinfI	GANTC	5 cut(s)	126, 500, 631, 842, 956
HpaII	CCGG	2 cut(s)	111, 992
HphI	GGTGA	7 cut(s)	776, 855, 1193, 1214, 1235, 1244, 1259
Hpy166II	GTNNAC	1 cut(s)	635
Hpy188I	TCNGA	8 cut(s)	102, 125, 234, 505, 689, 827, 961, 1064
Hpy188III	TCNNGA	4 cut(s)	260, 308, 460, 1112
Hpy8I	GTNNAC	1 cut(s)	635
HpyAV	CCTTC	2 cut(s)	721, 1190
HpyCH4III	ACNGT	1 cut(s)	1181
HpyCH4V	TGCA	6 cut(s)	89, 456, 599, 655, 744, 833
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 596
HpyF3I	CTNAG	1 cut(s)	893
Hsp92II	CATG	7 cut(s)	256, 311, 368, 659, 722, 748, 1302
HspAI	GCGC	1 cut(s)	918
KpnI	GGTACC	1 cut(s)	150
Kzo9I	GATC	7 cut(s)	97, 304, 860, 931, 988, 1006, 1059
LmnI	GCTCC	1 cut(s)	1055
LpnPI	CCDG	4 cut(s)	48, 75, 124, 1005
Lsp1109I	GCAGC	2 cut(s)	145, 341
LweI	GCATC	7 cut(s)	126, 286, 382, 465, 535, 744, 757
MaeI	CTAG	5 cut(s)	9, 302, 567, 849, 1137
MaeIII	GTNAC	2 cut(s)	65, 313
MalI	GATC	7 cut(s)	99, 306, 862, 933, 990, 1008, 1061
MboI	GATC	7 cut(s)	97, 304, 860, 931, 988, 1006, 1059
MfeI	CAATTG	1 cut(s)	791
MflI	RGATCY	1 cut(s)	988
MluCI	AATT	9 cut(s)	57, 159, 280, 683, 700, 791, 855, 1037, 1272
MlyI	GAGTC	1 cut(s)	640
MmeI	TCCRAC	1 cut(s)	1198
MnlI	CCTC	6 cut(s)	428, 483, 487, 690, 979, 1176
MseI	TTAA	3 cut(s)	488, 705, 1271
MslI	CAYNNNNRTG	3 cut(s)	369, 390, 1182
MspCI	CTTAAG	1 cut(s)	487
MspI	CCGG	2 cut(s)	111, 992
MspR9I	CCNGG	1 cut(s)	63
MunI	CAATTG	1 cut(s)	791
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	2 cut(s)	248, 596
NdeII	GATC	7 cut(s)	97, 304, 860, 931, 988, 1006, 1059
NlaIII	CATG	7 cut(s)	256, 311, 368, 659, 722, 748, 1302
NlaIV	GGNNCC	5 cut(s)	148, 180, 440, 990, 1092
NmuCI	GTSAC	2 cut(s)	65, 313
NspI	RCATGY	2 cut(s)	659, 722
PaeI	GCATGC	1 cut(s)	659
PagI	TCATGA	1 cut(s)	307
PfeI	GAWTC	4 cut(s)	126, 500, 842, 956
PflFI	GACNNNGTC	1 cut(s)	168
PflMI	CCANNNNNTGG	2 cut(s)	62, 360
PinAI	ACCGGT	1 cut(s)	110
PkrI	GCNGC	4 cut(s)	135, 331, 550, 661
PleI	GAGTC	1 cut(s)	639
PpsI	GAGTC	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	5 cut(s)	148, 180, 440, 990, 1092
PspPI	GGNCC	1 cut(s)	796
PsuI	RGATCY	1 cut(s)	988
PsyI	GACNNNGTC	1 cut(s)	168
RsaI	GTAC	3 cut(s)	148, 379, 1144
RsaNI	GTAC	3 cut(s)	147, 378, 1143
RseI	CAYNNNNRTG	3 cut(s)	369, 390, 1182
SaqAI	TTAA	3 cut(s)	488, 705, 1271
SatI	GCNGC	4 cut(s)	134, 330, 549, 660
Sau3AI	GATC	7 cut(s)	97, 304, 860, 931, 988, 1006, 1059
Sau96I	GGNCC	1 cut(s)	796
ScaI	AGTACT	1 cut(s)	1144
SchI	GAGTC	1 cut(s)	640
ScrFI	CCNGG	1 cut(s)	63
SfaNI	GCATC	7 cut(s)	126, 286, 382, 465, 535, 744, 757
SinI	GGWCC	1 cut(s)	796
SmiMI	CAYNNNNRTG	3 cut(s)	369, 390, 1182
SmlI	CTYRAG	2 cut(s)	207, 487
SmoI	CTYRAG	2 cut(s)	207, 487
SphI	GCATGC	1 cut(s)	659
Sse9I	AATT	9 cut(s)	57, 159, 280, 683, 700, 791, 855, 1037, 1272
SsiI	CCGC	5 cut(s)	151, 549, 659, 662, 782
SspMI	CTAG	5 cut(s)	9, 302, 567, 849, 1137
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	1181
TaqI	TCGA	1 cut(s)	859
TaqII	GACCGA	1 cut(s)	944
TasI	AATT	9 cut(s)	57, 159, 280, 683, 700, 791, 855, 1037, 1272
TatI	WGTACW	2 cut(s)	377, 1142
TauI	GCSGC	2 cut(s)	551, 662
TfiI	GAWTC	4 cut(s)	126, 500, 842, 956
Tru1I	TTAA	3 cut(s)	488, 705, 1271
Tru9I	TTAA	3 cut(s)	488, 705, 1271
TseFI	GTSAC	2 cut(s)	65, 313
TseI	GCWGC	2 cut(s)	133, 329
Tsp45I	GTSAC	2 cut(s)	65, 313
TspDTI	ATGAA	5 cut(s)	324, 632, 708, 981, 1209
TspGWI	ACGGA	1 cut(s)	410
Tth111I	GACNNNGTC	1 cut(s)	168
Van91I	CCANNNNNTGG	2 cut(s)	62, 360
Vha464I	CTTAAG	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	796
XapI	RAATTY	3 cut(s)	280, 700, 855
XceI	RCATGY	2 cut(s)	659, 722
XspI	CTAG	5 cut(s)	9, 302, 567, 849, 1137
ZrmI	AGTACT	1 cut(s)	1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.