Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002052

Physical Location & Seq

Genomic Coordinates Forward (+)

48509975 .. 48511758

Gene Structure 1784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTTTTCATCAAAAGATTGGTATGAATGTGGATGTACAAAACATAAGGATGCTTATGAGGTGAGGAAGTGGATCCTTCGTGACACAAATTTTTGGAACCATGTTGCTTATTGCATAAAGAGTGTCTTGCCCCTTATTTGTGTCTTAAGAGAGGTTGTTTCGGAAATGAGACCCGCCATGGGATTTATCTATGAGTTGATGGATGCCGCAAAAGATAAGATTGCAAGTAATCTTGGAAATGTGGAAGCAAAGTATGGAGCTATTTGGAGGAGATTAGATAATAGATGGAGTCCACAACTTCATCAACCATTGCATGCGGCGGGTTATTACTTGAACCCTCAATTCCGATATGAAGACAACTTTAAAAATACTGAGCATGTGAAGAAGGGTTTGGAAGAGTGCATGGATAGGATGCTAGTTGGTGAGGCTCGTGTCGCCGCGGAAATACAATTAGACTTATATGAGCGAAAGCTTGGTAAGTTTGGAAGTGCGATGGCCGAATCTACTAGAAAAATCCGATCACCCGGTAAAAGAAAGGCTCCAAGGAAATCAATGCGTCTTGATGACATTGCGGATGATGGTATTAGAATTAATCCATTTGATGACACCAATCCTCTCTTTGAGCACCATGGTGATGATAGTGATGGTGGTGATAGTTTGGGTGAAGATAGTTTGGATGGTGATCTTCTAATTGATGATGATGATGATTTCCAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

239

Amino Acids

27.47

Weight (kDa)

5.32

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36095 AT5G33406
fragaria_vesca	FvH4_2g19761 FvH4_2g31910 FvH4_3g32805 FvH4_3g33921 FvH4_3g33922 FvH4_4g11993 FvH4_5g36511 FvH4_6g16931 FvH4_6g16931
malus_domestica	MD01G1106300.v1.1 MD01G1106700.v1.1 MD08G1077600.v1.1
pyrus_communis	pycom01g13300 pycom06g05900 pycom12g14200 pycom13g27730 pycom16g16790
rosa_chinensis	RchiOBHm_Chr1g0361961 RchiOBHm_Chr1g0361981 RchiOBHm_Chr2g0141951 RchiOBHm_Chr7g0218361
rosa_multiflora	Rmu_co8147950.1_g000001 Rmu_co8356159.1_g000001 Rmu_sc0000117.1_g000022 Rmu_sc0007718.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097000 Rroxscaffold_2G00126330 Rroxscaffold_4G00304630 Rroxscaffold_5G00366570 Rroxscaffold_5G00366580
rosa_rugosa	Rorug03G0268800 Rorug03G0268900 Rorug05G0477700 Rorug05G0477800 RorugPtG0003500.1
rosa_samantha	Rh1AG259100 Rh4AG027200 Rh7CG313700
rosa_wichuraiana	Rw0G004680 Rw1G026970 Rw4G019360 Rw6G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	440
AciI	CCGC	7 cut(s)	174, 207, 317, 320, 438, 440, 572
AclWI	GGATC	2 cut(s)	67, 80
AcoI	YGGCCR	1 cut(s)	495
AcsI	RAATTY	1 cut(s)	88
AfaI	GTAC	1 cut(s)	37
AfiI	CCNNNNNNNGG	1 cut(s)	179
AflII	CTTAAG	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	334
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AleI	CACNNNNGTG	1 cut(s)	630
AluBI	AGCT	2 cut(s)	260, 472
AluI	AGCT	2 cut(s)	260, 472
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	2 cut(s)	67, 80
AoxI	GGCC	1 cut(s)	495
ApoI	RAATTY	1 cut(s)	88
AseI	ATTAAT	1 cut(s)	591
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	7 cut(s)	73, 434, 513, 644, 662, 674, 692
BamHI	GGATCC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	627
BccI	CCATC	6 cut(s)	193, 279, 487, 572, 638, 671
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	2 cut(s)	416, 507
BfrI	CTTAAG	1 cut(s)	145
BisI	GCNGC	3 cut(s)	207, 318, 438
BlsI	GCNGC	3 cut(s)	208, 319, 439
Bme1390I	CCNGG	1 cut(s)	525
BmiI	GGNNCC	3 cut(s)	74, 98, 540
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	3 cut(s)	40, 193, 402
BpiI	GAAGAC	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	525
BsaBI	GATNNNNATC	1 cut(s)	681
BsaI	GGTCTC	1 cut(s)	163
BsaJI	CCNNGG	5 cut(s)	177, 438, 542, 628, 712
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse3DI	GCAATG	2 cut(s)	308, 567
Bse8I	GATNNNNATC	1 cut(s)	681
BseDI	CCNNGG	5 cut(s)	177, 438, 542, 628, 712
BseGI	GGATG	6 cut(s)	38, 55, 208, 417, 580, 682
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	2 cut(s)	308, 567
BseMII	CTCAG	1 cut(s)	363
BseRI	GAGGAG	1 cut(s)	283
Bsh1236I	CGCG	1 cut(s)	440
BshFI	GGCC	1 cut(s)	497
BsiHKAI	GWGCWC	1 cut(s)	627
BsiSI	CCGG	1 cut(s)	525
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	497
Bso31I	GGTCTC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp1407I	TGTACA	1 cut(s)	35
Bsp143I	GATC	3 cut(s)	72, 518, 682
Bsp19I	CCATGG	2 cut(s)	177, 628
BspACI	CCGC	7 cut(s)	174, 207, 317, 320, 438, 440, 572
BspANI	GGCC	1 cut(s)	497
BspCNI	CTCAG	1 cut(s)	364
BspFNI	CGCG	1 cut(s)	440
BspLI	GGNNCC	3 cut(s)	74, 98, 540
BspPI	GGATC	2 cut(s)	67, 80
BspTI	CTTAAG	1 cut(s)	145
BspTNI	GGTCTC	1 cut(s)	163
BsrDI	GCAATG	2 cut(s)	308, 567
BsrGI	TGTACA	1 cut(s)	35
BssECI	CCNNGG	5 cut(s)	177, 438, 542, 628, 712
BssMI	GATC	3 cut(s)	72, 518, 682
BssSI	CACGAG	1 cut(s)	429
BssT1I	CCWWGG	4 cut(s)	177, 542, 628, 712
Bst2BI	CACGAG	1 cut(s)	429
Bst6I	CTCTTC	1 cut(s)	390
BstAFI	CTTAAG	1 cut(s)	145
BstAUI	TGTACA	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	1 cut(s)	372
BstDSI	CCRYGG	3 cut(s)	177, 438, 628
BstF5I	GGATG	6 cut(s)	38, 55, 208, 417, 580, 682
BstFNI	CGCG	1 cut(s)	440
BstKTI	GATC	3 cut(s)	75, 521, 685
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	3 cut(s)	72, 518, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNSI	RCATGY	2 cut(s)	317, 380
BstSCI	CCNGG	1 cut(s)	523
BstUI	CGCG	1 cut(s)	440
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	497
BtgI	CCRYGG	3 cut(s)	177, 438, 628
BtgZI	GCGATG	1 cut(s)	506
BtsCI	GGATG	6 cut(s)	38, 55, 208, 417, 580, 682
Cac8I	GCNNGC	1 cut(s)	315
Cfr42I	CCGCGG	1 cut(s)	441
CseI	GACGC	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	6 cut(s)	101, 178, 314, 377, 403, 629
CviJI	RGCY	5 cut(s)	260, 428, 472, 497, 539
CviKI_1	RGCY	5 cut(s)	260, 428, 472, 497, 539
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	3 cut(s)	74, 520, 684
DpnII	GATC	3 cut(s)	72, 518, 682
DraI	TTTAAA	1 cut(s)	364
EaeI	YGGCCR	1 cut(s)	495
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco130I	CCWWGG	4 cut(s)	177, 542, 628, 712
Eco31I	GGTCTC	1 cut(s)	163
EcoT14I	CCWWGG	4 cut(s)	177, 542, 628, 712
ErhI	CCWWGG	4 cut(s)	177, 542, 628, 712
FaeI	CATG	6 cut(s)	104, 181, 317, 380, 406, 632
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FatI	CATG	6 cut(s)	100, 177, 313, 376, 402, 628
FauI	CCCGC	2 cut(s)	181, 313
Fnu4HI	GCNGC	3 cut(s)	207, 318, 438
FokI	GGATG	6 cut(s)	45, 62, 215, 424, 587, 689
Fsp4HI	GCNGC	3 cut(s)	207, 318, 438
FspBI	CTAG	2 cut(s)	416, 507
GluI	GCNGC	3 cut(s)	207, 318, 438
HaeIII	GGCC	1 cut(s)	497
HapII	CCGG	1 cut(s)	525
HgaI	GACGC	1 cut(s)	545
Hin1II	CATG	6 cut(s)	104, 181, 317, 380, 406, 632
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	2 cut(s)	289, 500
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	7 cut(s)	73, 434, 513, 644, 662, 674, 692
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	3 cut(s)	163, 347, 518
Hpy188III	TCNNGA	2 cut(s)	80, 560
Hpy8I	GTNNAC	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	86, 379
HpyCH4V	TGCA	4 cut(s)	114, 224, 313, 402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	1 cut(s)	372
Hsp92II	CATG	6 cut(s)	104, 181, 317, 380, 406, 632
KspI	CCGCGG	1 cut(s)	441
Kzo9I	GATC	3 cut(s)	72, 518, 682
LmnI	GCTCC	2 cut(s)	257, 544
LpnPI	CCDG	1 cut(s)	538
LweI	GCATC	3 cut(s)	40, 193, 402
MaeI	CTAG	2 cut(s)	416, 507
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	3 cut(s)	74, 520, 684
MboI	GATC	3 cut(s)	72, 518, 682
MboII	GAAGA	5 cut(s)	365, 394, 407, 677, 677
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	627
MluCI	AATT	5 cut(s)	88, 341, 449, 588, 690
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	7 cut(s)	52, 57, 145, 261, 348, 418, 624
MseI	TTAA	3 cut(s)	146, 363, 591
MslI	CAYNNNNRTG	3 cut(s)	48, 630, 633
MspA1I	CMGCKG	1 cut(s)	440
MspCI	CTTAAG	1 cut(s)	145
MspI	CCGG	1 cut(s)	525
MspR9I	CCNGG	1 cut(s)	525
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	1 cut(s)	434
NciI	CCSGG	1 cut(s)	525
NcoI	CCATGG	2 cut(s)	177, 628
NdeII	GATC	3 cut(s)	72, 518, 682
NlaIII	CATG	6 cut(s)	104, 181, 317, 380, 406, 632
NlaIV	GGNNCC	3 cut(s)	74, 98, 540
NmuCI	GTSAC	1 cut(s)	80
NspI	RCATGY	2 cut(s)	317, 380
OliI	CACNNNNGTG	1 cut(s)	630
PaeI	GCATGC	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	500
PkrI	GCNGC	3 cut(s)	208, 319, 439
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
PshBI	ATTAAT	1 cut(s)	591
PspN4I	GGNNCC	3 cut(s)	74, 98, 540
PsuI	RGATCY	1 cut(s)	72
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
RseI	CAYNNNNRTG	3 cut(s)	48, 630, 633
SacII	CCGCGG	1 cut(s)	441
SaqAI	TTAA	3 cut(s)	146, 363, 591
SatI	GCNGC	3 cut(s)	207, 318, 438
Sau3AI	GATC	3 cut(s)	72, 518, 682
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	525
SduI	GDGCHC	1 cut(s)	627
SetI	ASST	4 cut(s)	63, 156, 262, 474
SfaNI	GCATC	3 cut(s)	40, 193, 402
Sfr303I	CCGCGG	1 cut(s)	441
SgrBI	CCGCGG	1 cut(s)	441
SmiMI	CAYNNNNRTG	3 cut(s)	48, 630, 633
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
SphI	GCATGC	1 cut(s)	317
Sse9I	AATT	5 cut(s)	88, 341, 449, 588, 690
SsiI	CCGC	7 cut(s)	174, 207, 317, 320, 438, 440, 572
SspMI	CTAG	2 cut(s)	416, 507
StyD4I	CCNGG	1 cut(s)	523
StyI	CCWWGG	4 cut(s)	177, 542, 628, 712
TasI	AATT	5 cut(s)	88, 341, 449, 588, 690
TatI	WGTACW	1 cut(s)	35
TauI	GCSGC	3 cut(s)	209, 320, 440
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	3 cut(s)	146, 363, 591
Tru9I	TTAA	3 cut(s)	146, 363, 591
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	3 cut(s)	39, 290, 366
Vha464I	CTTAAG	1 cut(s)	145
VspI	ATTAAT	1 cut(s)	591
XapI	RAATTY	1 cut(s)	88
XceI	RCATGY	2 cut(s)	317, 380
XspI	CTAG	2 cut(s)	416, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.