hAT family C-terminal dimerisation region
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G36095 AT5G33406 |
| fragaria_vesca | FvH4_2g19761 FvH4_2g31910 FvH4_3g32805 FvH4_3g33921 FvH4_3g33922 FvH4_4g11993 FvH4_5g36511 FvH4_6g16931 FvH4_6g16931 |
| malus_domestica | MD01G1106300.v1.1 MD01G1106700.v1.1 MD08G1077600.v1.1 |
| pyrus_communis | pycom01g13300 pycom06g05900 pycom12g14200 pycom13g27730 pycom16g16790 |
| rosa_chinensis | RchiOBHm_Chr1g0361961 RchiOBHm_Chr1g0361981 RchiOBHm_Chr2g0141951 RchiOBHm_Chr7g0218361 |
| rosa_multiflora | Rmu_co8147950.1_g000001 Rmu_co8356159.1_g000001 Rmu_sc0000117.1_g000022 Rmu_sc0007718.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00097000 Rroxscaffold_2G00126330 Rroxscaffold_4G00304630 Rroxscaffold_5G00366570 Rroxscaffold_5G00366580 |
| rosa_rugosa | Rorug03G0268800 Rorug03G0268900 Rorug05G0477700 Rorug05G0477800 RorugPtG0003500.1 |
| rosa_samantha | Rh1AG259100 Rh4AG027200 Rh7CG313700 |
| rosa_wichuraiana | Rw0G004680 Rw1G026970 Rw4G019360 Rw6G028600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 30, 140, 143 |
| AfeI | AGCGCT | 1 cut(s) | 368 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 393 |
| AluBI | AGCT | 1 cut(s) | 191 |
| AluI | AGCT | 1 cut(s) | 191 |
| Ama87I | CYCGRG | 1 cut(s) | 386 |
| Aor51HI | AGCGCT | 1 cut(s) | 368 |
| AoxI | GGCC | 1 cut(s) | 264 |
| AspLEI | GCGC | 1 cut(s) | 369 |
| AspS9I | GGNCC | 1 cut(s) | 302 |
| AvaI | CYCGRG | 1 cut(s) | 386 |
| AvaII | GGWCC | 1 cut(s) | 302 |
| BccI | CCATC | 2 cut(s) | 16, 102 |
| BceAI | ACGGC | 1 cut(s) | 369 |
| BfaI | CTAG | 1 cut(s) | 333 |
| BfoI | RGCGCY | 1 cut(s) | 370 |
| BisI | GCNGC | 2 cut(s) | 30, 141 |
| BlsI | GCNGC | 2 cut(s) | 31, 142 |
| Bme18I | GGWCC | 1 cut(s) | 302 |
| BmeT110I | CYCGRG | 1 cut(s) | 386 |
| BmgT120I | GGNCC | 1 cut(s) | 302 |
| BmsI | GCATC | 2 cut(s) | 16, 225 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 393 |
| BseGI | GGATG | 3 cut(s) | 31, 184, 240 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 393 |
| BshFI | GGCC | 1 cut(s) | 266 |
| BsiHKCI | CYCGRG | 1 cut(s) | 386 |
| BslFI | GGGAC | 1 cut(s) | 125 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 393 |
| BsmFI | GGGAC | 1 cut(s) | 125 |
| BsnI | GGCC | 1 cut(s) | 266 |
| BsoBI | CYCGRG | 1 cut(s) | 386 |
| Bsp143I | GATC | 2 cut(s) | 100, 115 |
| BspACI | CCGC | 3 cut(s) | 30, 140, 143 |
| BspANI | GGCC | 1 cut(s) | 266 |
| BssMI | GATC | 2 cut(s) | 100, 115 |
| BstC8I | GCNNGC | 3 cut(s) | 49, 145, 223 |
| BstDEI | CTNAG | 1 cut(s) | 187 |
| BstF5I | GGATG | 3 cut(s) | 31, 184, 240 |
| BstH2I | RGCGCY | 1 cut(s) | 370 |
| BstHHI | GCGC | 1 cut(s) | 369 |
| BstKTI | GATC | 2 cut(s) | 103, 118 |
| BstMBI | GATC | 2 cut(s) | 100, 115 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 373 |
| BstNSI | RCATGY | 1 cut(s) | 140 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 357 |
| BsuRI | GGCC | 1 cut(s) | 266 |
| BtsCI | GGATG | 3 cut(s) | 31, 184, 240 |
| Cac8I | GCNNGC | 3 cut(s) | 49, 145, 223 |
| CfoI | GCGC | 1 cut(s) | 369 |
| Cfr13I | GGNCC | 1 cut(s) | 302 |
| CviAII | CATG | 2 cut(s) | 137, 226 |
| CviJI | RGCY | 5 cut(s) | 147, 191, 266, 323, 356 |
| CviKI_1 | RGCY | 5 cut(s) | 147, 191, 266, 323, 356 |
| DdeI | CTNAG | 1 cut(s) | 187 |
| DpnI | GATC | 2 cut(s) | 102, 117 |
| DpnII | GATC | 2 cut(s) | 100, 115 |
| Eco47I | GGWCC | 1 cut(s) | 302 |
| Eco47III | AGCGCT | 1 cut(s) | 368 |
| Eco88I | CYCGRG | 1 cut(s) | 386 |
| FaeI | CATG | 2 cut(s) | 140, 229 |
| FaqI | GGGAC | 1 cut(s) | 125 |
| FatI | CATG | 2 cut(s) | 136, 225 |
| FauI | CCCGC | 1 cut(s) | 136 |
| Fnu4HI | GCNGC | 2 cut(s) | 30, 141 |
| FokI | GGATG | 3 cut(s) | 38, 191, 247 |
| Fsp4HI | GCNGC | 2 cut(s) | 30, 141 |
| FspBI | CTAG | 1 cut(s) | 333 |
| GlaI | GCGC | 1 cut(s) | 368 |
| GluI | GCNGC | 2 cut(s) | 30, 141 |
| HaeII | RGCGCY | 1 cut(s) | 370 |
| HaeIII | GGCC | 1 cut(s) | 266 |
| HhaI | GCGC | 1 cut(s) | 369 |
| Hin1II | CATG | 2 cut(s) | 140, 229 |
| Hin6I | GCGC | 1 cut(s) | 367 |
| HinP1I | GCGC | 1 cut(s) | 367 |
| HinfI | GANTC | 1 cut(s) | 314 |
| Hpy188I | TCNGA | 1 cut(s) | 410 |
| HpyCH4IV | ACGT | 1 cut(s) | 256 |
| HpyCH4V | TGCA | 2 cut(s) | 225, 328 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 373 |
| HpyF3I | CTNAG | 1 cut(s) | 187 |
| HpySE526I | ACGT | 1 cut(s) | 256 |
| Hsp92II | CATG | 2 cut(s) | 140, 229 |
| HspAI | GCGC | 1 cut(s) | 367 |
| Kzo9I | GATC | 2 cut(s) | 100, 115 |
| LmnI | GCTCC | 1 cut(s) | 364 |
| LweI | GCATC | 2 cut(s) | 16, 225 |
| MaeI | CTAG | 1 cut(s) | 333 |
| MaeII | ACGT | 1 cut(s) | 256 |
| MalI | GATC | 2 cut(s) | 102, 117 |
| MboI | GATC | 2 cut(s) | 100, 115 |
| MfeI | CAATTG | 1 cut(s) | 275 |
| MluCI | AATT | 3 cut(s) | 42, 164, 275 |
| MnlI | CCTC | 1 cut(s) | 169 |
| MseI | TTAA | 3 cut(s) | 57, 155, 392 |
| MunI | CAATTG | 1 cut(s) | 275 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 373 |
| NdeII | GATC | 2 cut(s) | 100, 115 |
| NlaIII | CATG | 2 cut(s) | 140, 229 |
| NspI | RCATGY | 1 cut(s) | 140 |
| PfeI | GAWTC | 1 cut(s) | 314 |
| PkrI | GCNGC | 2 cut(s) | 31, 142 |
| PspPI | GGNCC | 1 cut(s) | 302 |
| SaqAI | TTAA | 3 cut(s) | 57, 155, 392 |
| SatI | GCNGC | 2 cut(s) | 30, 141 |
| Sau3AI | GATC | 2 cut(s) | 100, 115 |
| Sau96I | GGNCC | 1 cut(s) | 302 |
| SetI | ASST | 2 cut(s) | 193, 259 |
| SfaNI | GCATC | 2 cut(s) | 16, 225 |
| SinI | GGWCC | 1 cut(s) | 302 |
| Sse9I | AATT | 3 cut(s) | 42, 164, 275 |
| SsiI | CCGC | 3 cut(s) | 30, 140, 143 |
| SspMI | CTAG | 1 cut(s) | 333 |
| TaiI | ACGT | 1 cut(s) | 259 |
| TaqI | TCGA | 1 cut(s) | 169 |
| TasI | AATT | 3 cut(s) | 42, 164, 275 |
| TauI | GCSGC | 2 cut(s) | 32, 143 |
| TfiI | GAWTC | 1 cut(s) | 314 |
| Tru1I | TTAA | 3 cut(s) | 57, 155, 392 |
| Tru9I | TTAA | 3 cut(s) | 57, 155, 392 |
| TspDTI | ATGAA | 2 cut(s) | 113, 213 |
| VpaK11BI | GGWCC | 1 cut(s) | 302 |
| XceI | RCATGY | 1 cut(s) | 140 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 357 |
| XspI | CTAG | 1 cut(s) | 333 |