Belongs to the AAA ATPase family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| AAA_assoc | PF14363 | 36 - 128 | 2.6e-24 | Domain associated at C-terminal with AAA |
| AAA | PF00004 | 246 - 375 | 2.2e-20 | ATPase family associated with various cellular activities (AAA) |
| AAA_lid_At3g28540 | PF25568 | 377 - 449 | 2.8e-19 | At3g28540-like, AAA+ ATPase lid domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 761 |
| AccBSI | CCGCTC | 1 cut(s) | 274 |
| AccI | GTMKAC | 1 cut(s) | 617 |
| AccII | CGCG | 1 cut(s) | 230 |
| AciI | CCGC | 3 cut(s) | 230, 233, 274 |
| AclI | AACGTT | 1 cut(s) | 418 |
| AclWI | GGATC | 5 cut(s) | 286, 334, 635, 648, 1070 |
| AcsI | RAATTY | 1 cut(s) | 997 |
| AcuI | CTGAAG | 3 cut(s) | 942, 1251, 1275 |
| AfaI | GTAC | 3 cut(s) | 53, 108, 1132 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 761 |
| AflII | CTTAAG | 1 cut(s) | 800 |
| AflIII | ACRYGT | 1 cut(s) | 1119 |
| AgeI | ACCGGT | 1 cut(s) | 147 |
| AgsI | TTSAA | 5 cut(s) | 208, 386, 466, 688, 856 |
| AjnI | CCWGG | 2 cut(s) | 754, 1093 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1385, 1417 |
| Alw21I | GWGCWC | 1 cut(s) | 432 |
| Alw26I | GTCTC | 2 cut(s) | 447, 1162 |
| AlwI | GGATC | 5 cut(s) | 286, 334, 635, 648, 1070 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 761 |
| Ama87I | CYCGRG | 1 cut(s) | 605 |
| AoxI | GGCC | 2 cut(s) | 749, 1467 |
| ApeKI | GCWGC | 1 cut(s) | 782 |
| ApoI | RAATTY | 1 cut(s) | 997 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 182, 214, 868, 900 |
| AsiGI | ACCGGT | 1 cut(s) | 147 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 308 |
| AspLEI | GCGC | 1 cut(s) | 1216 |
| AspS9I | GGNCC | 2 cut(s) | 260, 749 |
| AsuHPI | GGTGA | 5 cut(s) | 21, 379, 538, 860, 988 |
| AvaI | CYCGRG | 1 cut(s) | 605 |
| AvaII | GGWCC | 1 cut(s) | 260 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1269, 1302 |
| BamHI | GGATCC | 1 cut(s) | 640 |
| BanII | GRGCYC | 1 cut(s) | 432 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 686, 718 |
| BbsI | GAAGAC | 1 cut(s) | 214 |
| Bbv12I | GWGCWC | 1 cut(s) | 432 |
| BbvI | GCAGC | 1 cut(s) | 769 |
| BccI | CCATC | 6 cut(s) | 563, 631, 781, 1001, 1172, 1197 |
| BceAI | ACGGC | 1 cut(s) | 1085 |
| BciT130I | CCWGG | 2 cut(s) | 756, 1095 |
| BclI | TGATCA | 1 cut(s) | 183 |
| BcoDI | GTCTC | 2 cut(s) | 447, 1162 |
| BfaI | CTAG | 2 cut(s) | 555, 771 |
| BfoI | RGCGCY | 1 cut(s) | 1217 |
| BfrI | CTTAAG | 1 cut(s) | 800 |
| BisI | GCNGC | 2 cut(s) | 231, 783 |
| BlsI | GCNGC | 2 cut(s) | 232, 784 |
| Bme1390I | CCNGG | 2 cut(s) | 756, 1095 |
| Bme18I | GGWCC | 1 cut(s) | 260 |
| BmeT110I | CYCGRG | 1 cut(s) | 605 |
| BmgT120I | GGNCC | 2 cut(s) | 260, 749 |
| BmiI | GGNNCC | 1 cut(s) | 642 |
| BmrFI | CCNGG | 2 cut(s) | 756, 1095 |
| BmsI | GCATC | 5 cut(s) | 65, 66, 81, 619, 1254 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1154 |
| BpiI | GAAGAC | 1 cut(s) | 214 |
| BpmI | CTGGAG | 2 cut(s) | 118, 1224 |
| BpuEI | CTTGAG | 1 cut(s) | 842 |
| Bsa29I | ATCGAT | 2 cut(s) | 89, 666 |
| BsaI | GGTCTC | 1 cut(s) | 1162 |
| BsaJI | CCNNGG | 2 cut(s) | 498, 1168 |
| BsaWI | WCCGGW | 5 cut(s) | 65, 109, 147, 210, 262 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 396, 426 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 761 |
| Bse118I | RCCGGY | 1 cut(s) | 147 |
| Bse1I | ACTGG | 1 cut(s) | 766 |
| BseBI | CCWGG | 2 cut(s) | 756, 1095 |
| BseCI | ATCGAT | 2 cut(s) | 89, 666 |
| BseDI | CCNNGG | 2 cut(s) | 498, 1168 |
| BseGI | GGATG | 4 cut(s) | 599, 610, 1111, 1189 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 761 |
| BseMII | CTCAG | 5 cut(s) | 60, 259, 509, 933, 1236 |
| BseNI | ACTGG | 1 cut(s) | 766 |
| BseRI | GAGGAG | 2 cut(s) | 371, 515 |
| BseXI | GCAGC | 1 cut(s) | 769 |
| Bsh1236I | CGCG | 1 cut(s) | 230 |
| Bsh1285I | CGRYCG | 1 cut(s) | 148 |
| BshFI | GGCC | 2 cut(s) | 751, 1469 |
| BshTI | ACCGGT | 1 cut(s) | 147 |
| BshVI | ATCGAT | 2 cut(s) | 89, 666 |
| BsiEI | CGRYCG | 1 cut(s) | 148 |
| BsiHKAI | GWGCWC | 1 cut(s) | 432 |
| BsiHKCI | CYCGRG | 1 cut(s) | 605 |
| BsiSI | CCGG | 5 cut(s) | 66, 110, 148, 211, 263 |
| BsiWI | CGTACG | 1 cut(s) | 51 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 761 |
| BsmAI | GTCTC | 2 cut(s) | 447, 1162 |
| BsmI | GAATGC | 1 cut(s) | 652 |
| BsnI | GGCC | 2 cut(s) | 751, 1469 |
| Bso31I | GGTCTC | 1 cut(s) | 1162 |
| BsoBI | CYCGRG | 1 cut(s) | 605 |
| Bsp1286I | GDGCHC | 1 cut(s) | 432 |
| Bsp1407I | TGTACA | 1 cut(s) | 1130 |
| BspACI | CCGC | 3 cut(s) | 230, 233, 274 |
| BspANI | GGCC | 2 cut(s) | 751, 1469 |
| BspCNI | CTCAG | 5 cut(s) | 59, 258, 510, 934, 1237 |
| BspDI | ATCGAT | 2 cut(s) | 89, 666 |
| BspFNI | CGCG | 1 cut(s) | 230 |
| BspLI | GGNNCC | 1 cut(s) | 642 |
| BspPI | GGATC | 5 cut(s) | 286, 334, 635, 648, 1070 |
| BspQI | GCTCTTC | 1 cut(s) | 1251 |
| BspTI | CTTAAG | 1 cut(s) | 800 |
| BspTNI | GGTCTC | 1 cut(s) | 1162 |
| BsrBI | CCGCTC | 1 cut(s) | 274 |
| BsrFI | RCCGGY | 1 cut(s) | 147 |
| BsrGI | TGTACA | 1 cut(s) | 1130 |
| BsrI | ACTGG | 1 cut(s) | 766 |
| BssAI | RCCGGY | 1 cut(s) | 147 |
| BssECI | CCNNGG | 2 cut(s) | 498, 1168 |
| BssT1I | CCWWGG | 1 cut(s) | 1168 |
| Bst2UI | CCWGG | 2 cut(s) | 756, 1095 |
| Bst4CI | ACNGT | 2 cut(s) | 33, 181 |
| Bst6I | CTCTTC | 5 cut(s) | 330, 683, 851, 1251, 1313 |
| BstAFI | CTTAAG | 1 cut(s) | 800 |
| BstAUI | TGTACA | 1 cut(s) | 1130 |
| BstDEI | CTNAG | 8 cut(s) | 46, 245, 449, 518, 827, 942, 1245, 1344 |
| BstF5I | GGATG | 4 cut(s) | 599, 610, 1111, 1189 |
| BstFNI | CGCG | 1 cut(s) | 230 |
| BstH2I | RGCGCY | 1 cut(s) | 1217 |
| BstHHI | GCGC | 1 cut(s) | 1216 |
| BstMAI | GTCTC | 2 cut(s) | 447, 1162 |
| BstMCI | CGRYCG | 1 cut(s) | 148 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 788, 1250 |
| BstNI | CCWGG | 2 cut(s) | 756, 1095 |
| BstNSI | RCATGY | 1 cut(s) | 1123 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1154 |
| BstSCI | CCNGG | 2 cut(s) | 754, 1093 |
| BstUI | CGCG | 1 cut(s) | 230 |
| BstV1I | GCAGC | 1 cut(s) | 769 |
| BstV2I | GAAGAC | 1 cut(s) | 214 |
| BstX2I | RGATCY | 3 cut(s) | 291, 339, 640 |
| BstYI | RGATCY | 3 cut(s) | 291, 339, 640 |
| Bsu15I | ATCGAT | 2 cut(s) | 89, 666 |
| BsuRI | GGCC | 2 cut(s) | 751, 1469 |
| BsuTUI | ATCGAT | 2 cut(s) | 89, 666 |
| BtgZI | GCGATG | 2 cut(s) | 650, 800 |
| BtsCI | GGATG | 4 cut(s) | 599, 610, 1111, 1189 |
| BtsIMutI | CAGTG | 1 cut(s) | 177 |
| CaiI | CAGNNNCTG | 1 cut(s) | 761 |
| CfoI | GCGC | 1 cut(s) | 1216 |
| Cfr10I | RCCGGY | 1 cut(s) | 147 |
| Cfr13I | GGNCC | 2 cut(s) | 260, 749 |
| ClaI | ATCGAT | 2 cut(s) | 89, 666 |
| CpoI | CGGWCCG | 1 cut(s) | 260 |
| CseI | GACGC | 1 cut(s) | 236 |
| Csp6I | GTAC | 3 cut(s) | 52, 107, 1131 |
| CspAI | ACCGGT | 1 cut(s) | 147 |
| CspI | CGGWCCG | 1 cut(s) | 260 |
| CviAII | CATG | 2 cut(s) | 98, 1120 |
| CviQI | GTAC | 3 cut(s) | 52, 107, 1131 |
| DdeI | CTNAG | 8 cut(s) | 46, 245, 449, 518, 827, 942, 1245, 1344 |
| Eam1104I | CTCTTC | 5 cut(s) | 330, 683, 851, 1251, 1313 |
| EarI | CTCTTC | 5 cut(s) | 330, 683, 851, 1251, 1313 |
| EciI | GGCGGA | 1 cut(s) | 248 |
| Ecl136II | GAGCTC | 1 cut(s) | 430 |
| Eco130I | CCWWGG | 1 cut(s) | 1168 |
| Eco24I | GRGCYC | 1 cut(s) | 432 |
| Eco31I | GGTCTC | 1 cut(s) | 1162 |
| Eco47I | GGWCC | 1 cut(s) | 260 |
| Eco53kI | GAGCTC | 1 cut(s) | 430 |
| Eco57I | CTGAAG | 3 cut(s) | 942, 1251, 1275 |
| Eco88I | CYCGRG | 1 cut(s) | 605 |
| EcoICRI | GAGCTC | 1 cut(s) | 430 |
| EcoRII | CCWGG | 2 cut(s) | 754, 1093 |
| EcoT14I | CCWWGG | 1 cut(s) | 1168 |
| EcoT38I | GRGCYC | 1 cut(s) | 432 |
| ErhI | CCWWGG | 1 cut(s) | 1168 |
| FaeI | CATG | 2 cut(s) | 101, 1123 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1056, 1088 |
| FatI | CATG | 2 cut(s) | 97, 1119 |
| FbaI | TGATCA | 1 cut(s) | 183 |
| FblI | GTMKAC | 1 cut(s) | 617 |
| Fnu4HI | GCNGC | 2 cut(s) | 231, 783 |
| FokI | GGATG | 4 cut(s) | 597, 606, 1118, 1176 |
| FriOI | GRGCYC | 1 cut(s) | 432 |
| Fsp4HI | GCNGC | 2 cut(s) | 231, 783 |
| FspBI | CTAG | 2 cut(s) | 555, 771 |
| GlaI | GCGC | 1 cut(s) | 1215 |
| GluI | GCNGC | 2 cut(s) | 231, 783 |
| GsuI | CTGGAG | 2 cut(s) | 118, 1224 |
| HaeII | RGCGCY | 1 cut(s) | 1217 |
| HaeIII | GGCC | 2 cut(s) | 751, 1469 |
| HapII | CCGG | 5 cut(s) | 66, 110, 148, 211, 263 |
| HgaI | GACGC | 1 cut(s) | 236 |
| HhaI | GCGC | 1 cut(s) | 1216 |
| Hin1II | CATG | 2 cut(s) | 101, 1123 |
| Hin6I | GCGC | 1 cut(s) | 1214 |
| HinP1I | GCGC | 1 cut(s) | 1214 |
| HindIII | AAGCTT | 5 cut(s) | 116, 446, 530, 720, 1306 |
| HpaII | CCGG | 5 cut(s) | 66, 110, 148, 211, 263 |
| HphI | GGTGA | 5 cut(s) | 21, 379, 538, 860, 988 |
| Hpy166II | GTNNAC | 3 cut(s) | 618, 1050, 1436 |
| Hpy188III | TCNNGA | 9 cut(s) | 73, 247, 439, 463, 508, 605, 821, 950, 1051 |
| Hpy8I | GTNNAC | 3 cut(s) | 618, 1050, 1436 |
| Hpy99I | CGWCG | 6 cut(s) | 37, 40, 194, 230, 880, 1057 |
| HpyAV | CCTTC | 4 cut(s) | 18, 688, 1318, 1342 |
| HpyCH4III | ACNGT | 2 cut(s) | 33, 181 |
| HpyCH4IV | ACGT | 6 cut(s) | 418, 483, 620, 629, 1090, 1284 |
| HpyCH4V | TGCA | 2 cut(s) | 1111, 1267 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 788, 1250 |
| HpyF3I | CTNAG | 8 cut(s) | 46, 245, 449, 518, 827, 942, 1245, 1344 |
| HpySE526I | ACGT | 6 cut(s) | 418, 483, 620, 629, 1090, 1284 |
| Hsp92II | CATG | 2 cut(s) | 101, 1123 |
| HspAI | GCGC | 1 cut(s) | 1214 |
| Ksp22I | TGATCA | 1 cut(s) | 183 |
| LguI | GCTCTTC | 1 cut(s) | 1251 |
| LmnI | GCTCC | 2 cut(s) | 99, 249 |
| Lsp1109I | GCAGC | 1 cut(s) | 769 |
| LweI | GCATC | 5 cut(s) | 65, 66, 81, 619, 1254 |
| MaeI | CTAG | 2 cut(s) | 555, 771 |
| MaeII | ACGT | 6 cut(s) | 418, 483, 620, 629, 1090, 1284 |
| MaeIII | GTNAC | 4 cut(s) | 419, 734, 976, 1234 |
| MbiI | CCGCTC | 1 cut(s) | 274 |
| MflI | RGATCY | 3 cut(s) | 291, 339, 640 |
| MhlI | GDGCHC | 1 cut(s) | 432 |
| MluCI | AATT | 4 cut(s) | 586, 793, 963, 997 |
| MlyI | GAGTC | 2 cut(s) | 368, 973 |
| MmeI | TCCRAC | 1 cut(s) | 342 |
| MroXI | GAANNNNTTC | 1 cut(s) | 308 |
| MseI | TTAA | 5 cut(s) | 62, 476, 801, 966, 1184 |
| MspA1I | CMGCKG | 1 cut(s) | 1244 |
| MspCI | CTTAAG | 1 cut(s) | 800 |
| MspI | CCGG | 5 cut(s) | 66, 110, 148, 211, 263 |
| MspR9I | CCNGG | 2 cut(s) | 756, 1095 |
| Mva1269I | GAATGC | 1 cut(s) | 652 |
| MvaI | CCWGG | 2 cut(s) | 756, 1095 |
| MvnI | CGCG | 1 cut(s) | 230 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 788, 1250 |
| NlaIII | CATG | 2 cut(s) | 101, 1123 |
| NlaIV | GGNNCC | 1 cut(s) | 642 |
| NmuCI | GTSAC | 1 cut(s) | 976 |
| NspI | RCATGY | 1 cut(s) | 1123 |
| PaeR7I | CTCGAG | 1 cut(s) | 605 |
| PciI | ACATGT | 1 cut(s) | 1119 |
| PciSI | GCTCTTC | 1 cut(s) | 1251 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 330, 351, 489, 626, 884 |
| PctI | GAATGC | 1 cut(s) | 652 |
| PdmI | GAANNNNTTC | 1 cut(s) | 308 |
| Pfl23II | CGTACG | 1 cut(s) | 51 |
| PflFI | GACNNNGTC | 1 cut(s) | 458 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 761 |
| PfoI | TCCNGGA | 1 cut(s) | 1093 |
| PinAI | ACCGGT | 1 cut(s) | 147 |
| PkrI | GCNGC | 2 cut(s) | 232, 784 |
| PleI | GAGTC | 2 cut(s) | 367, 973 |
| PpsI | GAGTC | 2 cut(s) | 367, 973 |
| PscI | ACATGT | 1 cut(s) | 1119 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1154 |
| Psp124BI | GAGCTC | 1 cut(s) | 432 |
| Psp1406I | AACGTT | 1 cut(s) | 418 |
| Psp6I | CCWGG | 2 cut(s) | 754, 1093 |
| PspGI | CCWGG | 2 cut(s) | 754, 1093 |
| PspLI | CGTACG | 1 cut(s) | 51 |
| PspN4I | GGNNCC | 1 cut(s) | 642 |
| PspPI | GGNCC | 2 cut(s) | 260, 749 |
| PstNI | CAGNNNCTG | 1 cut(s) | 761 |
| PsuI | RGATCY | 3 cut(s) | 291, 339, 640 |
| PsyI | GACNNNGTC | 1 cut(s) | 458 |
| PvuII | CAGCTG | 1 cut(s) | 1244 |
| RsaI | GTAC | 3 cut(s) | 53, 108, 1132 |
| RsaNI | GTAC | 3 cut(s) | 52, 107, 1131 |
| Rsr2I | CGGWCCG | 1 cut(s) | 260 |
| RsrII | CGGWCCG | 1 cut(s) | 260 |
| SacI | GAGCTC | 1 cut(s) | 432 |
| SapI | GCTCTTC | 1 cut(s) | 1251 |
| SaqAI | TTAA | 5 cut(s) | 62, 476, 801, 966, 1184 |
| SatI | GCNGC | 2 cut(s) | 231, 783 |
| Sau96I | GGNCC | 2 cut(s) | 260, 749 |
| SchI | GAGTC | 2 cut(s) | 368, 973 |
| ScrFI | CCNGG | 2 cut(s) | 756, 1095 |
| SduI | GDGCHC | 1 cut(s) | 432 |
| SfaNI | GCATC | 5 cut(s) | 65, 66, 81, 619, 1254 |
| Sfr274I | CTCGAG | 1 cut(s) | 605 |
| SinI | GGWCC | 1 cut(s) | 260 |
| SlaI | CTCGAG | 1 cut(s) | 605 |
| SmlI | CTYRAG | 3 cut(s) | 605, 800, 821 |
| SmoI | CTYRAG | 3 cut(s) | 605, 800, 821 |
| Sse9I | AATT | 4 cut(s) | 586, 793, 963, 997 |
| SsiI | CCGC | 3 cut(s) | 230, 233, 274 |
| SspMI | CTAG | 2 cut(s) | 555, 771 |
| SstI | GAGCTC | 1 cut(s) | 432 |
| StyD4I | CCNGG | 2 cut(s) | 754, 1093 |
| StyI | CCWWGG | 1 cut(s) | 1168 |
| TaaI | ACNGT | 2 cut(s) | 33, 181 |
| TaiI | ACGT | 6 cut(s) | 421, 486, 623, 632, 1093, 1287 |
| TasI | AATT | 4 cut(s) | 586, 793, 963, 997 |
| TatI | WGTACW | 1 cut(s) | 1130 |
| TauI | GCSGC | 1 cut(s) | 233 |
| Tru1I | TTAA | 5 cut(s) | 62, 476, 801, 966, 1184 |
| Tru9I | TTAA | 5 cut(s) | 62, 476, 801, 966, 1184 |
| TscAI | CASTG | 1 cut(s) | 184 |
| TseFI | GTSAC | 1 cut(s) | 976 |
| TseI | GCWGC | 1 cut(s) | 782 |
| Tsp45I | GTSAC | 1 cut(s) | 976 |
| TspDTI | ATGAA | 2 cut(s) | 972, 991 |
| TspGWI | ACGGA | 1 cut(s) | 603 |
| TspRI | CASTG | 1 cut(s) | 184 |
| Tth111I | GACNNNGTC | 1 cut(s) | 458 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 761 |
| Vha464I | CTTAAG | 1 cut(s) | 800 |
| VpaK11BI | GGWCC | 1 cut(s) | 260 |
| XapI | RAATTY | 1 cut(s) | 997 |
| XceI | RCATGY | 1 cut(s) | 1123 |
| XhoI | CTCGAG | 1 cut(s) | 605 |
| XmiI | GTMKAC | 1 cut(s) | 617 |
| XmnI | GAANNNNTTC | 1 cut(s) | 308 |
| XspI | CTAG | 2 cut(s) | 555, 771 |