RchiOBHm_Chr2g0099801

Domain associated at C-terminal with AAA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000471
Physical Location & Seq
Reverse (-)
11893849 .. 11894212
364 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47451

Sequence Viewer

Length: 363 bp
ATGGAACCTTCAGAAAATAGAAAAATTACTTGGAGAGGAAGCAACTCACAGAATCATTTCCTTGTTGCCCAAATCCTATCACTCCTTCAGCTCATTATAAAATACCCCATCATATCCTTCAACTCCCAACTCAAAATTTCTCCAAAGACTCAAGTCAATAACACAATGTTTACTCTCAATCCCAAAGATATGCAAACCACAGCATCCACATTGTTCTCAGCCTATGCCTCCTTTGCTGCATCAATGATGTTGGTCCGCTCCATTACAGACCAACTCATTCCCCACCAGTTTCGCTCATACATATACTCAGTCTTCAGTCACTTTTTTACCACTCCCTCCTCGAACCTCACTTTGATTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

120

Amino Acids

13.7

Weight (kDa)

9.9

Isoelectric Point (pI)

28.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18190 AT2G18193
fragaria_vesca FvH4_1g12130 FvH4_1g12690 FvH4_1g12700 FvH4_1g12712 FvH4_1g12716 FvH4_1g12731
malus_domestica MD02G1141300.v1.1 MD02G1141400.v1.1 MD02G1141600.v1.1 MD02G1141800.v1.1 MD02G1142200.v1.1 MD15G1254200.v1.1
prunus_persica Prupe.7G159500_v2.0.a1 Prupe.7G159600_v2.0.a1 Prupe.7G165500_v2.0.a1
pyrus_communis pycom02g11130 pycom02g11150 pycom02g11160 pycom02g11180 pycom15g22350
rosa_chinensis RchiOBHm_Chr2g0099791 RchiOBHm_Chr2g0099801 RchiOBHm_Chr2g0100651 RchiOBHm_Chr2g0100681 RchiOBHm_Chr2g0100691 RchiOBHm_Chr2g0100701 RchiOBHm_Chr2g0100721 RchiOBHm_Chr2g0100801 RchiOBHm_Chr3g0459141
rosa_laevigata RLG00000016914 RLG00000016915 RLG00000016997 RLG00000016998 RLG00000017000 RLG00000017002 RLG00000017012 RLG00000025114
rosa_multiflora Rmu_co8416275.1_g000001 Rmu_sc0001187.1_g000004 Rmu_sc0001497.1_g000006 Rmu_sc0001659.1_g000004 Rmu_sc0001659.1_g000006 Rmu_sc0001659.1_g000008 Rmu_sc0001659.1_g000010 Rmu_sc0008864.1_g000008 Rmu_sc0028022.1_g000001
rosa_roxburghii Rroxscaffold_2G00141850 Rroxscaffold_2G00141930 Rroxscaffold_2G00141940 Rroxscaffold_2G00141950 Rroxscaffold_2G00141960 Rroxscaffold_2G00141970
rosa_rugosa Rorug02G0091800 Rorug02G0091800 Rorug02G0091800 Rorug02G0091900 Rorug02G0092900 Rorug03G0033500
rosa_samantha Rh2BG135600 Rh2BG143900 Rh2BG144000 Rh2BG144200 Rh2BG144300 Rh2BG144400 Rh2BG144500 Rh2BG145500 Rh2CG136900 Rh2CG137000 Rh2CG144800 Rh2CG145000 Rh2CG145100 Rh2CG145200 Rh2CG145500 Rh2CG146400 Rh2DG137400 Rh2DG137500 Rh2DG144300 Rh2DG144500 Rh2DG144600 Rh2DG144700 Rh2DG145000 Rh2DG145900 Rh3BG094700 Rh3DG095300
rosa_wichuraiana Rw2G010920 Rw2G010950 Rw2G010990 Rw3G007860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 98
AccBSI CCGCTC 1 cut(s) 258
AciI CCGC 1 cut(s) 256
AcsI RAATTY 1 cut(s) 135
AcuI CTGAAG 2 cut(s) 71, 298
AgsI TTSAA 1 cut(s) 121
AjuI GAANNNNNNNTTGG 2 cut(s) 13, 45
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 1 cut(s) 135
Asp700I GAANNNNTTC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 253
AvaII GGWCC 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 304
BbvI GCAGC 1 cut(s) 223
BccI CCATC 1 cut(s) 116
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 212, 248
BoxI GACNNNNGTC 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 304
BpuEI CTTGAG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 286
BseGI GGATG 1 cut(s) 203
BseMII CTCAG 2 cut(s) 231, 321
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 1 cut(s) 328
BseXI GCAGC 1 cut(s) 223
BspACI CCGC 1 cut(s) 256
BspCNI CTCAG 2 cut(s) 230, 320
BspLI GGNNCC 1 cut(s) 6
BsrBI CCGCTC 1 cut(s) 258
BsrI ACTGG 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 217, 307
BstF5I GGATG 1 cut(s) 203
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstPAI GACNNNNGTC 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 304
BtsCI GGATG 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 253
CviJI RGCY 2 cut(s) 91, 221
CviKI_1 RGCY 2 cut(s) 91, 221
DdeI CTNAG 2 cut(s) 217, 307
Eco47I GGWCC 1 cut(s) 253
Eco57I CTGAAG 2 cut(s) 71, 298
FaiI YATR 7 cut(s) 98, 113, 191, 225, 298, 302, 304
Fnu4HI GCNGC 1 cut(s) 237
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 1 cut(s) 237
GluI GCNGC 1 cut(s) 237
HinfI GANTC 2 cut(s) 52, 148
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 1 cut(s) 13
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 3 cut(s) 18, 95, 127
HpyCH4V TGCA 2 cut(s) 193, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 2 cut(s) 217, 307
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 1 cut(s) 299
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 2 cut(s) 212, 248
MaeIII GTNAC 1 cut(s) 317
MbiI CCGCTC 1 cut(s) 258
MboII GAAGA 1 cut(s) 304
MluCI AATT 2 cut(s) 24, 135
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 5 cut(s) 29, 238, 346, 349, 356
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 1 cut(s) 361
MwoI GCNNNNNNNGC 1 cut(s) 233
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 317
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 1 cut(s) 238
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PshAI GACNNNNGTC 1 cut(s) 152
PsiI TTATAA 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 253
SaqAI TTAA 1 cut(s) 361
SatI GCNGC 1 cut(s) 237
Sau96I GGNCC 1 cut(s) 253
SchI GAGTC 1 cut(s) 142
SetI ASST 3 cut(s) 10, 93, 348
SfaNI GCATC 2 cut(s) 212, 248
SgeI CNNG 5 cut(s) 42, 74, 164, 298, 352
SinI GGWCC 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 150
SmoI CTYRAG 1 cut(s) 150
Sse9I AATT 2 cut(s) 24, 135
SsiI CCGC 1 cut(s) 256
TaqI TCGA 1 cut(s) 341
TasI AATT 2 cut(s) 24, 135
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 1 cut(s) 361
Tru9I TTAA 1 cut(s) 361
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 253
XapI RAATTY 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.