RLG00000016914

Domain associated at C-terminal with AAA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000471
Physical Location & Seq
Reverse (-)
11196568 .. 11197550
983 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016914

Sequence Viewer

Length: 795 bp
ATGGACTCTTACTTGCCCTACGTTTTTGCTCGAGCTAAAGACCTTCAAGAAGAGGAAAAGGTTGTTAGGCTTTACACCCGGGGTTCAAGTCTGGGTGACGATGAGAACGATAACAGGGGTTCAAGTGGTTGGGGTTCCATAAGGATGGAGCATCCATCTAATTTTGGAACAATGGCGATGGATCCAGAGCTTAAAAGAATGGTTATTGATGATTTGGATAGGTTTATGAGGAGGAGGGAGTTTTACAAAAGGGTTGGTAAATCGAGCTTGATTGCAGCCATGGCTAACTATCTCAAGTTTGATGTCTACGATTTGGAGCTTTCTGACGTTCACAGTAATTGTGATTTGAGGAGGGATATTGATTGCTGCGCCAAAGTGCAGAACAGGGGACGTGAACCGGATCCACGTTCTCATAACAACAGGTTGACACTATCAGGCCTACTGAACTTCATAGATGGTCTGTGGTCAAGCTGCGGGGACGAGAGAATTATAGTTTTCACCACCAACCACAAGGATCGGTTAGACCCTGCACTGCTGCGTCCGGGTCGAATGGATGTGCACATTCACATGTCTTATTGCACTGCAAAAGGATTCGACATCTTAGCCTCTAACTACCTAGGCATTCATGAAAGCAACCTTCATCACCTCTGCAAAGAAATTAAAGGGTTGATAGAGAGCAATGAGGTCACCCCTGCAGAGGTTGCTGAGGAGCTCATGAAGATGCTAATGGTACTCTCAAAGGGCATGTCAATTTCCTCAAGAAAAAGAAGGTCGAGAATGATAAAGTTAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

265

Amino Acids

30.39

Weight (kDa)

8.18

Isoelectric Point (pI)

55.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 136 - 191 1.7e-06 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 193 - 240 5.3e-15 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18190 AT2G18193
fragaria_vesca FvH4_1g12130 FvH4_1g12690 FvH4_1g12700 FvH4_1g12712 FvH4_1g12716 FvH4_1g12731
malus_domestica MD02G1141300.v1.1 MD02G1141400.v1.1 MD02G1141600.v1.1 MD02G1141800.v1.1 MD02G1142200.v1.1 MD15G1254200.v1.1
prunus_persica Prupe.7G159500_v2.0.a1 Prupe.7G159600_v2.0.a1 Prupe.7G165500_v2.0.a1
pyrus_communis pycom02g11130 pycom02g11150 pycom02g11160 pycom02g11180 pycom15g22350
rosa_chinensis RchiOBHm_Chr2g0099791 RchiOBHm_Chr2g0099801 RchiOBHm_Chr2g0100651 RchiOBHm_Chr2g0100681 RchiOBHm_Chr2g0100691 RchiOBHm_Chr2g0100701 RchiOBHm_Chr2g0100721 RchiOBHm_Chr2g0100801 RchiOBHm_Chr3g0459141
rosa_laevigata RLG00000016914 RLG00000016915 RLG00000016997 RLG00000016998 RLG00000017000 RLG00000017002 RLG00000017012 RLG00000025114
rosa_multiflora Rmu_co8416275.1_g000001 Rmu_sc0001187.1_g000004 Rmu_sc0001497.1_g000006 Rmu_sc0001659.1_g000004 Rmu_sc0001659.1_g000006 Rmu_sc0001659.1_g000008 Rmu_sc0001659.1_g000010 Rmu_sc0008864.1_g000008 Rmu_sc0028022.1_g000001
rosa_roxburghii Rroxscaffold_2G00141850 Rroxscaffold_2G00141930 Rroxscaffold_2G00141940 Rroxscaffold_2G00141950 Rroxscaffold_2G00141960 Rroxscaffold_2G00141970
rosa_rugosa Rorug02G0091800 Rorug02G0091800 Rorug02G0091800 Rorug02G0091900 Rorug02G0092900 Rorug03G0033500
rosa_samantha Rh2BG135600 Rh2BG143900 Rh2BG144000 Rh2BG144200 Rh2BG144300 Rh2BG144400 Rh2BG144500 Rh2BG145500 Rh2CG136900 Rh2CG137000 Rh2CG144800 Rh2CG145000 Rh2CG145100 Rh2CG145200 Rh2CG145500 Rh2CG146400 Rh2DG137400 Rh2DG137500 Rh2DG144300 Rh2DG144500 Rh2DG144600 Rh2DG144700 Rh2DG145000 Rh2DG145900 Rh3BG094700 Rh3DG095300
rosa_wichuraiana Rw2G010920 Rw2G010950 Rw2G010990 Rw3G007860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 306
AciI CCGC 1 cut(s) 474
AclWI GGATC 5 cut(s) 176, 189, 395, 408, 522
AfaI GTAC 1 cut(s) 732
AfiI CCNNNNNNNGG 1 cut(s) 697
AflIII ACRYGT 1 cut(s) 567
AgsI TTSAA 3 cut(s) 47, 87, 123
AjiI CACGTC 1 cut(s) 392
AluBI AGCT 6 cut(s) 35, 190, 267, 319, 471, 712
AluI AGCT 6 cut(s) 35, 190, 267, 319, 471, 712
Alw21I GWGCWC 2 cut(s) 561, 714
Alw44I GTGCAC 1 cut(s) 557
AlwI GGATC 5 cut(s) 176, 189, 395, 408, 522
Ama87I CYCGRG 2 cut(s) 30, 78
AoxI GGCC 1 cut(s) 436
ApaLI GTGCAC 1 cut(s) 557
ApeKI GCWGC 4 cut(s) 275, 366, 471, 535
ArsI GACNNNNNNTTYG 2 cut(s) 731, 763
AspA2I CCTAGG 1 cut(s) 616
AspLEI GCGC 1 cut(s) 371
AsuC2I CCSGG 3 cut(s) 79, 80, 543
AsuHPI GGTGA 4 cut(s) 107, 490, 635, 679
AvaI CYCGRG 2 cut(s) 30, 78
AvrII CCTAGG 1 cut(s) 616
BaeGI GKGCMC 1 cut(s) 561
BamHI GGATCC 2 cut(s) 181, 400
BanII GRGCYC 1 cut(s) 714
Bbv12I GWGCWC 2 cut(s) 561, 714
BbvCI CCTCAGC 1 cut(s) 705
BbvI GCAGC 4 cut(s) 287, 353, 458, 522
BccI CCATC 4 cut(s) 139, 163, 172, 449
BcnI CCSGG 3 cut(s) 79, 80, 543
BfaI CTAG 1 cut(s) 617
BfmI CTRYAG 1 cut(s) 693
BisI GCNGC 4 cut(s) 276, 367, 472, 536
BlnI CCTAGG 1 cut(s) 616
BlsI GCNGC 4 cut(s) 277, 368, 473, 537
Bme1390I CCNGG 3 cut(s) 79, 80, 543
BmeT110I CYCGRG 2 cut(s) 30, 78
BmgBI CACGTC 1 cut(s) 392
BmiI GGNNCC 3 cut(s) 136, 183, 402
BmrFI CCNGG 3 cut(s) 79, 80, 543
BmsI GCATC 2 cut(s) 160, 711
Bpu10I CCTNAGC 1 cut(s) 705
BpuEI CTTGAG 2 cut(s) 278, 742
BpuMI CCSGG 3 cut(s) 79, 80, 543
BsaJI CCNNGG 4 cut(s) 78, 79, 279, 616
BsaWI WCCGGW 1 cut(s) 397
Bsc4I CCNNNNNNNGG 1 cut(s) 697
Bse3DI GCAATG 1 cut(s) 685
BseDI CCNNGG 4 cut(s) 78, 79, 279, 616
BseGI GGATG 3 cut(s) 150, 151, 559
BseLI CCNNNNNNNGG 1 cut(s) 697
BseMI GCAATG 1 cut(s) 685
BseMII CTCAG 1 cut(s) 696
BseRI GAGGAG 4 cut(s) 244, 247, 364, 722
BseSI GKGCMC 1 cut(s) 561
BseXI GCAGC 4 cut(s) 287, 353, 458, 522
BsgI GTGCAG 2 cut(s) 398, 513
BshFI GGCC 1 cut(s) 438
BsiHKAI GWGCWC 2 cut(s) 561, 714
BsiHKCI CYCGRG 2 cut(s) 30, 78
BsiSI CCGG 3 cut(s) 79, 398, 542
BslFI GGGAC 2 cut(s) 402, 491
BslI CCNNNNNNNGG 1 cut(s) 697
BsmFI GGGAC 2 cut(s) 402, 491
BsmI GAATGC 1 cut(s) 621
BsnI GGCC 1 cut(s) 438
BsoBI CYCGRG 2 cut(s) 30, 78
Bsp1286I GDGCHC 2 cut(s) 561, 714
Bsp143I GATC 3 cut(s) 181, 400, 514
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 1 cut(s) 474
BspANI GGCC 1 cut(s) 438
BspCNI CTCAG 1 cut(s) 697
BspHI TCATGA 2 cut(s) 625, 714
BspLI GGNNCC 3 cut(s) 136, 183, 402
BspMAI CTGCAG 1 cut(s) 697
BspPI GGATC 5 cut(s) 176, 189, 395, 408, 522
BsrDI GCAATG 1 cut(s) 685
BssECI CCNNGG 4 cut(s) 78, 79, 279, 616
BssMI GATC 3 cut(s) 181, 400, 514
BssT1I CCWWGG 2 cut(s) 279, 616
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 45
BstAPI GCANNNNNTGC 1 cut(s) 701
BstDEI CTNAG 2 cut(s) 601, 705
BstDSI CCRYGG 1 cut(s) 279
BstEII GGTNACC 1 cut(s) 685
BstF5I GGATG 3 cut(s) 150, 151, 559
BstHHI GCGC 1 cut(s) 371
BstKTI GATC 3 cut(s) 184, 403, 517
BstMBI GATC 3 cut(s) 181, 400, 514
BstMWI GCNNNNNNNGC 2 cut(s) 281, 701
BstNSI RCATGY 2 cut(s) 571, 748
BstPI GGTNACC 1 cut(s) 685
BstSCI CCNGG 3 cut(s) 77, 78, 541
BstSFI CTRYAG 1 cut(s) 693
BstSLI GKGCMC 1 cut(s) 561
BstV1I GCAGC 4 cut(s) 287, 353, 458, 522
BstX2I RGATCY 2 cut(s) 181, 400
BstXI CCANNNNNNTGG 1 cut(s) 145
BstYI RGATCY 2 cut(s) 181, 400
BsuRI GGCC 1 cut(s) 438
BtgI CCRYGG 1 cut(s) 279
BtgZI GCGATG 1 cut(s) 191
BtrI CACGTC 1 cut(s) 392
BtsCI GGATG 3 cut(s) 150, 151, 559
BtsI GCAGTG 2 cut(s) 530, 579
BtsIMutI CAGTG 2 cut(s) 530, 579
CciI TCATGA 2 cut(s) 625, 714
CfoI GCGC 1 cut(s) 371
Cfr9I CCCGGG 1 cut(s) 78
CseI GACGC 1 cut(s) 527
Csp6I GTAC 1 cut(s) 731
CviAII CATG 5 cut(s) 280, 568, 626, 715, 745
CviQI GTAC 1 cut(s) 731
DdeI CTNAG 2 cut(s) 601, 705
DpnI GATC 3 cut(s) 183, 402, 516
DpnII GATC 3 cut(s) 181, 400, 514
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Ecl136II GAGCTC 1 cut(s) 712
Eco130I CCWWGG 2 cut(s) 279, 616
Eco147I AGGCCT 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 714
Eco53kI GAGCTC 1 cut(s) 712
Eco88I CYCGRG 2 cut(s) 30, 78
Eco91I GGTNACC 1 cut(s) 685
EcoICRI GAGCTC 1 cut(s) 712
EcoO65I GGTNACC 1 cut(s) 685
EcoT14I CCWWGG 2 cut(s) 279, 616
EcoT38I GRGCYC 1 cut(s) 714
ErhI CCWWGG 2 cut(s) 279, 616
FaeI CATG 5 cut(s) 283, 571, 629, 718, 748
FaqI GGGAC 2 cut(s) 402, 491
FatI CATG 5 cut(s) 279, 567, 625, 714, 744
FauI CCCGC 1 cut(s) 467
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 4 cut(s) 276, 367, 472, 536
FokI GGATG 3 cut(s) 138, 157, 566
FriOI GRGCYC 1 cut(s) 714
Fsp4HI GCNGC 4 cut(s) 276, 367, 472, 536
FspBI CTAG 1 cut(s) 617
GlaI GCGC 1 cut(s) 370
GluI GCNGC 4 cut(s) 276, 367, 472, 536
HaeIII GGCC 1 cut(s) 438
HapII CCGG 3 cut(s) 79, 398, 542
HgaI GACGC 1 cut(s) 527
HhaI GCGC 1 cut(s) 371
Hin1II CATG 5 cut(s) 283, 571, 629, 718, 748
Hin6I GCGC 1 cut(s) 369
HinP1I GCGC 1 cut(s) 369
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HinfI GANTC 2 cut(s) 5, 591
HpaII CCGG 3 cut(s) 79, 398, 542
HphI GGTGA 4 cut(s) 107, 490, 635, 679
Hpy166II GTNNAC 5 cut(s) 307, 331, 395, 426, 559
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 6 cut(s) 47, 185, 626, 715, 759, 774
Hpy8I GTNNAC 5 cut(s) 307, 331, 395, 426, 559
HpyAV CCTTC 3 cut(s) 53, 647, 762
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 4 cut(s) 21, 327, 391, 406
HpyCH4V TGCA 8 cut(s) 275, 379, 530, 559, 579, 584, 651, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 701
HpyF3I CTNAG 2 cut(s) 601, 705
HpySE526I ACGT 4 cut(s) 21, 327, 391, 406
Hsp92II CATG 5 cut(s) 283, 571, 629, 718, 748
HspAI GCGC 1 cut(s) 369
Kzo9I GATC 3 cut(s) 181, 400, 514
LmnI GCTCC 3 cut(s) 148, 316, 709
Lsp1109I GCAGC 4 cut(s) 287, 353, 458, 522
LweI GCATC 2 cut(s) 160, 711
MaeI CTAG 1 cut(s) 617
MaeII ACGT 4 cut(s) 21, 327, 391, 406
MaeIII GTNAC 2 cut(s) 95, 685
MalI GATC 3 cut(s) 183, 402, 516
MboI GATC 3 cut(s) 181, 400, 514
MboII GAAGA 2 cut(s) 62, 730
MflI RGATCY 2 cut(s) 181, 400
MhlI GDGCHC 2 cut(s) 561, 714
MluCI AATT 5 cut(s) 160, 337, 486, 657, 750
MseI TTAA 3 cut(s) 192, 660, 788
MslI CAYNNNNRTG 3 cut(s) 143, 566, 719
MspI CCGG 3 cut(s) 79, 398, 542
MspR9I CCNGG 3 cut(s) 79, 80, 543
Mva1269I GAATGC 1 cut(s) 621
MwoI GCNNNNNNNGC 2 cut(s) 281, 701
NciI CCSGG 3 cut(s) 79, 80, 543
NcoI CCATGG 1 cut(s) 279
NdeII GATC 3 cut(s) 181, 400, 514
NlaIII CATG 5 cut(s) 283, 571, 629, 718, 748
NlaIV GGNNCC 3 cut(s) 136, 183, 402
NmuCI GTSAC 2 cut(s) 95, 685
NspI RCATGY 2 cut(s) 571, 748
PaeR7I CTCGAG 1 cut(s) 30
PagI TCATGA 2 cut(s) 625, 714
PceI AGGCCT 1 cut(s) 438
PciI ACATGT 1 cut(s) 567
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PctI GAATGC 1 cut(s) 621
PfeI GAWTC 1 cut(s) 591
PkrI GCNGC 4 cut(s) 277, 368, 473, 537
PscI ACATGT 1 cut(s) 567
Psp124BI GAGCTC 1 cut(s) 714
PspEI GGTNACC 1 cut(s) 685
PspN4I GGNNCC 3 cut(s) 136, 183, 402
PspXI VCTCGAGB 1 cut(s) 30
PstI CTGCAG 1 cut(s) 697
PsuI RGATCY 2 cut(s) 181, 400
RsaI GTAC 1 cut(s) 732
RsaNI GTAC 1 cut(s) 731
RseI CAYNNNNRTG 3 cut(s) 143, 566, 719
SacI GAGCTC 1 cut(s) 714
SaqAI TTAA 3 cut(s) 192, 660, 788
SatI GCNGC 4 cut(s) 276, 367, 472, 536
Sau3AI GATC 3 cut(s) 181, 400, 514
ScrFI CCNGG 3 cut(s) 79, 80, 543
SduI GDGCHC 2 cut(s) 561, 714
SfaNI GCATC 2 cut(s) 160, 711
SfcI CTRYAG 1 cut(s) 693
Sfr274I CTCGAG 1 cut(s) 30
SlaI CTCGAG 1 cut(s) 30
SmaI CCCGGG 1 cut(s) 80
SmiMI CAYNNNNRTG 3 cut(s) 143, 566, 719
SmlI CTYRAG 3 cut(s) 30, 293, 757
SmoI CTYRAG 3 cut(s) 30, 293, 757
Sse9I AATT 5 cut(s) 160, 337, 486, 657, 750
SseBI AGGCCT 1 cut(s) 438
SsiI CCGC 1 cut(s) 474
SspMI CTAG 1 cut(s) 617
SstI GAGCTC 1 cut(s) 714
StuI AGGCCT 1 cut(s) 438
StyD4I CCNGG 3 cut(s) 77, 78, 541
StyI CCWWGG 2 cut(s) 279, 616
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 4 cut(s) 24, 330, 394, 409
TaqI TCGA 5 cut(s) 31, 263, 547, 594, 773
TasI AATT 5 cut(s) 160, 337, 486, 657, 750
TfiI GAWTC 1 cut(s) 591
Tru1I TTAA 3 cut(s) 192, 660, 788
Tru9I TTAA 3 cut(s) 192, 660, 788
TscAI CASTG 2 cut(s) 537, 586
TseFI GTSAC 2 cut(s) 95, 685
TseI GCWGC 4 cut(s) 275, 366, 471, 535
Tsp45I GTSAC 2 cut(s) 95, 685
TspDTI ATGAA 5 cut(s) 439, 614, 629, 642, 731
TspMI CCCGGG 1 cut(s) 78
TspRI CASTG 2 cut(s) 537, 586
VneI GTGCAC 1 cut(s) 557
XceI RCATGY 2 cut(s) 571, 748
XhoI CTCGAG 1 cut(s) 30
XmaI CCCGGG 1 cut(s) 78
XmaJI CCTAGG 1 cut(s) 616
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 1 cut(s) 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.