Rmu_sc0001659.1_g000008

Domain associated at C-terminal with AAA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001659.1
OG0000471
Physical Location & Seq
Forward (+)
30925 .. 32840
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001659.1_g000008.1.cds

Sequence Viewer

Length: 972 bp
atgacatcgtctggttttagttctctatttggcttgagattgtcgatctctgatgtttctgcattttccggtgactccgaccactgtttgacttgcatgtgcacttgtggatcaaacattgagaagcttgcggggttgcagcatcaaacatcatcagttcatcatcaacccagtttcggcagtgagtcaggggagctgaattcggttgatcgaagtcgattttcgaaggttggcaaggcttggaaaagaggttacttgttgtatggtccacctggtactggaaaatcaagcttgattgcagccatggctaattatcttaagtttgatgtccatgatttggacctcagtagaattttcaacaaccgtgaattgaggagaattctgctgtcttcttcaaatcgttctattttggtcattgaggacattgattgcagcgtgcaaatagaaaaccggaaagaggagaaaagtcgacaatctaataccaattttactctctcgggcctactgaacttcattgatggtctgtggtcaagctgcggtgatgggagaatcattgtgttcaccaccaaccacaaggacaaactagaccctgcattgttgcgtcccggtcgaatggatgtgcacattcacatgtcgtattgcactgcgagcgggttcagaatcttggcctctaactacctcggcattcaagaaagcaaccctcataacctttgcggagaaattgaagctttaatagagagcactgaggtaacccctgcagaggttgctgaggagctcttgaagagtgatgatgctgatgttgcttttgaaggacttgttgatttcctgaaaagaaagaaggaaaagaacaataaaattaatgatgaaggaactcaagaagctgatcaagatgcagaaaaagggatctcatacagttgcgaaggcagcgacaatggaagtggaactgaatctcatggttcagaatctaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

323

Amino Acids

35.4

Weight (kDa)

5.25

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18190 AT2G18193
fragaria_vesca FvH4_1g12130 FvH4_1g12690 FvH4_1g12700 FvH4_1g12712 FvH4_1g12716 FvH4_1g12731
malus_domestica MD02G1141300.v1.1 MD02G1141400.v1.1 MD02G1141600.v1.1 MD02G1141800.v1.1 MD02G1142200.v1.1 MD15G1254200.v1.1
prunus_persica Prupe.7G159500_v2.0.a1 Prupe.7G159600_v2.0.a1 Prupe.7G165500_v2.0.a1
pyrus_communis pycom02g11130 pycom02g11150 pycom02g11160 pycom02g11180 pycom15g22350
rosa_chinensis RchiOBHm_Chr2g0099791 RchiOBHm_Chr2g0099801 RchiOBHm_Chr2g0100651 RchiOBHm_Chr2g0100681 RchiOBHm_Chr2g0100691 RchiOBHm_Chr2g0100701 RchiOBHm_Chr2g0100721 RchiOBHm_Chr2g0100801 RchiOBHm_Chr3g0459141
rosa_laevigata RLG00000016914 RLG00000016915 RLG00000016997 RLG00000016998 RLG00000017000 RLG00000017002 RLG00000017012 RLG00000025114
rosa_multiflora Rmu_co8416275.1_g000001 Rmu_sc0001187.1_g000004 Rmu_sc0001497.1_g000006 Rmu_sc0001659.1_g000004 Rmu_sc0001659.1_g000006 Rmu_sc0001659.1_g000008 Rmu_sc0001659.1_g000010 Rmu_sc0008864.1_g000008 Rmu_sc0028022.1_g000001
rosa_roxburghii Rroxscaffold_2G00141850 Rroxscaffold_2G00141930 Rroxscaffold_2G00141940 Rroxscaffold_2G00141950 Rroxscaffold_2G00141960 Rroxscaffold_2G00141970
rosa_rugosa Rorug02G0091800 Rorug02G0091800 Rorug02G0091800 Rorug02G0091900 Rorug02G0092900 Rorug03G0033500
rosa_samantha Rh2BG135600 Rh2BG143900 Rh2BG144000 Rh2BG144200 Rh2BG144300 Rh2BG144400 Rh2BG144500 Rh2BG145500 Rh2CG136900 Rh2CG137000 Rh2CG144800 Rh2CG145000 Rh2CG145100 Rh2CG145200 Rh2CG145500 Rh2CG146400 Rh2DG137400 Rh2DG137500 Rh2DG144300 Rh2DG144500 Rh2DG144600 Rh2DG144700 Rh2DG145000 Rh2DG145900 Rh3BG094700 Rh3DG095300
rosa_wichuraiana Rw2G010920 Rw2G010950 Rw2G010990 Rw3G007860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 337
AccBSI CCGCTC 1 cut(s) 651
AccI GTMKAC 1 cut(s) 469
AciI CCGC 4 cut(s) 131, 537, 651, 714
AclWI GGATC 2 cut(s) 118, 911
AcsI RAATTY 3 cut(s) 199, 351, 378
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 5 cut(s) 176, 278, 337, 457, 760
AflII CTTAAG 1 cut(s) 317
AflIII ACRYGT 1 cut(s) 630
AgsI TTSAA 6 cut(s) 358, 396, 689, 725, 781, 809
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 7 cut(s) 127, 196, 291, 534, 728, 775, 881
AluI AGCT 7 cut(s) 127, 196, 291, 534, 728, 775, 881
Alw21I GWGCWC 4 cut(s) 104, 624, 743, 777
Alw44I GTGCAC 2 cut(s) 100, 620
AlwI GGATC 2 cut(s) 118, 911
Ama87I CYCGRG 1 cut(s) 496
AoxI GGCC 2 cut(s) 499, 666
ApaLI GTGCAC 2 cut(s) 100, 620
ApeKI GCWGC 5 cut(s) 139, 299, 432, 534, 924
ApoI RAATTY 3 cut(s) 199, 351, 378
AseI ATTAAT 1 cut(s) 858
AspS9I GGNCC 3 cut(s) 266, 340, 499
AsuC2I CCSGG 1 cut(s) 606
AsuHPI GGTGA 3 cut(s) 83, 551, 553
AsuII TTCGAA 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 496
AvaII GGWCC 2 cut(s) 266, 340
BaeGI GKGCMC 2 cut(s) 104, 624
BanII GRGCYC 1 cut(s) 777
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 4 cut(s) 104, 624, 743, 777
BbvCI CCTCAGC 1 cut(s) 768
BbvI GCAGC 5 cut(s) 151, 311, 444, 521, 936
BccI CCATC 2 cut(s) 512, 536
BciT130I CCWGG 1 cut(s) 273
BclI TGATCA 1 cut(s) 883
BcnI CCSGG 1 cut(s) 606
BfaI CTAG 1 cut(s) 584
BfmI CTRYAG 1 cut(s) 756
BfrI CTTAAG 1 cut(s) 317
BisI GCNGC 5 cut(s) 140, 300, 433, 535, 925
BlsI GCNGC 5 cut(s) 141, 301, 434, 536, 926
Bme1390I CCNGG 2 cut(s) 273, 606
Bme18I GGWCC 2 cut(s) 266, 340
BmeT110I CYCGRG 1 cut(s) 496
BmgT120I GGNCC 3 cut(s) 266, 340, 499
BmrFI CCNGG 2 cut(s) 273, 606
BmrI ACTGGG 1 cut(s) 165
BmsI GCATC 3 cut(s) 151, 781, 880
BmuI ACTGGG 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 381
Bpu10I CCTNAGC 1 cut(s) 768
Bpu14I TTCGAA 1 cut(s) 224
BpuEI CTTGAG 2 cut(s) 55, 858
BpuMI CCSGG 1 cut(s) 606
BsaJI CCNNGG 2 cut(s) 303, 679
BsaWI WCCGGW 2 cut(s) 68, 450
Bsc4I CCNNNNNNNGG 5 cut(s) 176, 278, 337, 457, 760
Bse1I ACTGG 2 cut(s) 171, 283
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 303, 679
BseGI GGATG 1 cut(s) 622
BseLI CCNNNNNNNGG 5 cut(s) 176, 278, 337, 457, 760
BseMII CTCAG 3 cut(s) 358, 735, 759
BseNI ACTGG 2 cut(s) 171, 283
BseRI GAGGAG 3 cut(s) 388, 473, 785
BseSI GKGCMC 2 cut(s) 104, 624
BseXI GCAGC 5 cut(s) 151, 311, 444, 521, 936
Bsh1285I CGRYCG 1 cut(s) 610
BshFI GGCC 2 cut(s) 501, 668
BsiEI CGRYCG 1 cut(s) 610
BsiHKAI GWGCWC 4 cut(s) 104, 624, 743, 777
BsiHKCI CYCGRG 1 cut(s) 496
BsiSI CCGG 3 cut(s) 69, 451, 606
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 5 cut(s) 176, 278, 337, 457, 760
BsmFI GGGAC 1 cut(s) 588
BsmI GAATGC 1 cut(s) 684
BsnI GGCC 2 cut(s) 501, 668
BsoBI CYCGRG 1 cut(s) 496
Bsp119I TTCGAA 1 cut(s) 224
Bsp1286I GDGCHC 4 cut(s) 104, 624, 743, 777
Bsp143I GATC 5 cut(s) 45, 110, 208, 883, 903
Bsp19I CCATGG 1 cut(s) 303
BspACI CCGC 4 cut(s) 131, 537, 651, 714
BspANI GGCC 2 cut(s) 501, 668
BspCNI CTCAG 3 cut(s) 357, 736, 760
BspMAI CTGCAG 1 cut(s) 760
BspPI GGATC 2 cut(s) 118, 911
BspT104I TTCGAA 1 cut(s) 224
BspTI CTTAAG 1 cut(s) 317
BsrBI CCGCTC 1 cut(s) 651
BsrI ACTGG 2 cut(s) 171, 283
BssECI CCNNGG 2 cut(s) 303, 679
BssMI GATC 5 cut(s) 45, 110, 208, 883, 903
BssT1I CCWWGG 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 3 cut(s) 86, 365, 914
Bst6I CTCTTC 1 cut(s) 776
BstAFI CTTAAG 1 cut(s) 317
BstAPI GCANNNNNTGC 1 cut(s) 764
BstBI TTCGAA 1 cut(s) 224
BstC8I GCNNGC 3 cut(s) 129, 437, 649
BstDEI CTNAG 3 cut(s) 344, 744, 768
BstDSI CCRYGG 1 cut(s) 303
BstEII GGTNACC 1 cut(s) 748
BstF5I GGATG 1 cut(s) 622
BstKTI GATC 5 cut(s) 48, 113, 211, 886, 906
BstMBI GATC 5 cut(s) 45, 110, 208, 883, 903
BstMCI CGRYCG 1 cut(s) 610
BstMWI GCNNNNNNNGC 5 cut(s) 305, 648, 764, 800, 924
BstNI CCWGG 1 cut(s) 273
BstNSI RCATGY 2 cut(s) 100, 634
BstPI GGTNACC 1 cut(s) 748
BstSCI CCNGG 2 cut(s) 271, 604
BstSFI CTRYAG 1 cut(s) 756
BstSLI GKGCMC 2 cut(s) 104, 624
BstV1I GCAGC 5 cut(s) 151, 311, 444, 521, 936
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 903
BstYI RGATCY 1 cut(s) 903
BsuRI GGCC 2 cut(s) 501, 668
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 622
BtsI GCAGTG 2 cut(s) 187, 642
BtsIMutI CAGTG 4 cut(s) 82, 187, 642, 741
Cac8I GCNNGC 3 cut(s) 129, 437, 649
Cfr13I GGNCC 3 cut(s) 266, 340, 499
CseI GACGC 1 cut(s) 590
CsiI ACCWGGT 1 cut(s) 271
Csp6I GTAC 1 cut(s) 276
CspCI CAANNNNNGTGG 2 cut(s) 919, 954
CviAII CATG 5 cut(s) 97, 304, 332, 631, 953
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 3 cut(s) 344, 744, 768
DpnI GATC 5 cut(s) 47, 112, 210, 885, 905
DpnII GATC 5 cut(s) 45, 110, 208, 883, 903
Eam1104I CTCTTC 1 cut(s) 776
EarI CTCTTC 1 cut(s) 776
Ecl136II GAGCTC 1 cut(s) 775
Eco130I CCWWGG 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 777
Eco47I GGWCC 2 cut(s) 266, 340
Eco53kI GAGCTC 1 cut(s) 775
Eco88I CYCGRG 1 cut(s) 496
Eco91I GGTNACC 1 cut(s) 748
EcoICRI GAGCTC 1 cut(s) 775
EcoO65I GGTNACC 1 cut(s) 748
EcoRI GAATTC 2 cut(s) 199, 378
EcoRII CCWGG 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 777
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 5 cut(s) 100, 307, 335, 634, 956
FaiI YATR 8 cut(s) 98, 264, 305, 333, 632, 705, 910, 954
FaqI GGGAC 1 cut(s) 588
FatI CATG 5 cut(s) 96, 303, 331, 630, 952
FauI CCCGC 2 cut(s) 124, 644
FbaI TGATCA 1 cut(s) 883
FblI GTMKAC 1 cut(s) 469
Fnu4HI GCNGC 5 cut(s) 140, 300, 433, 535, 925
FokI GGATG 1 cut(s) 629
FriOI GRGCYC 1 cut(s) 777
Fsp4HI GCNGC 5 cut(s) 140, 300, 433, 535, 925
FspBI CTAG 1 cut(s) 584
GluI GCNGC 5 cut(s) 140, 300, 433, 535, 925
HaeIII GGCC 2 cut(s) 501, 668
HapII CCGG 3 cut(s) 69, 451, 606
HgaI GACGC 1 cut(s) 590
Hin1II CATG 5 cut(s) 100, 307, 335, 634, 956
HincII GTYRAC 1 cut(s) 470
HindII GTYRAC 1 cut(s) 470
HindIII AAGCTT 3 cut(s) 125, 289, 726
HinfI GANTC 6 cut(s) 74, 185, 549, 660, 947, 962
HpaII CCGG 3 cut(s) 69, 451, 606
HphI GGTGA 3 cut(s) 83, 551, 553
Hpy166II GTNNAC 5 cut(s) 102, 269, 470, 561, 622
Hpy188I TCNGA 4 cut(s) 52, 79, 659, 961
Hpy188III TCNNGA 5 cut(s) 689, 778, 826, 875, 887
Hpy8I GTNNAC 5 cut(s) 102, 269, 470, 561, 622
HpyAV CCTTC 5 cut(s) 220, 803, 832, 860, 914
HpyCH4III ACNGT 3 cut(s) 86, 365, 914
HpyF10VI GCNNNNNNNGC 5 cut(s) 305, 648, 764, 800, 924
HpyF3I CTNAG 3 cut(s) 344, 744, 768
Hsp92II CATG 5 cut(s) 100, 307, 335, 634, 956
Ksp22I TGATCA 1 cut(s) 883
Kzo9I GATC 5 cut(s) 45, 110, 208, 883, 903
LmnI GCTCC 2 cut(s) 193, 772
Lsp1109I GCAGC 5 cut(s) 151, 311, 444, 521, 936
LweI GCATC 3 cut(s) 151, 781, 880
MabI ACCWGGT 1 cut(s) 271
MaeI CTAG 1 cut(s) 584
MaeIII GTNAC 3 cut(s) 71, 251, 748
MalI GATC 5 cut(s) 47, 112, 210, 885, 905
MbiI CCGCTC 1 cut(s) 651
MboI GATC 5 cut(s) 45, 110, 208, 883, 903
MboII GAAGA 3 cut(s) 381, 384, 793
MflI RGATCY 1 cut(s) 903
MhlI GDGCHC 4 cut(s) 104, 624, 743, 777
MluCI AATT 9 cut(s) 199, 310, 351, 368, 378, 484, 720, 855, 967
MlyI GAGTC 2 cut(s) 68, 194
MmeI TCCRAC 1 cut(s) 102
MseI TTAA 3 cut(s) 318, 731, 858
MslI CAYNNNNRTG 1 cut(s) 629
MspCI CTTAAG 1 cut(s) 317
MspI CCGG 3 cut(s) 69, 451, 606
MspR9I CCNGG 2 cut(s) 273, 606
Mva1269I GAATGC 1 cut(s) 684
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 5 cut(s) 305, 648, 764, 800, 924
NciI CCSGG 1 cut(s) 606
NcoI CCATGG 1 cut(s) 303
NdeII GATC 5 cut(s) 45, 110, 208, 883, 903
NlaIII CATG 5 cut(s) 100, 307, 335, 634, 956
NmeAIII GCCGAG 1 cut(s) 660
NmuCI GTSAC 1 cut(s) 71
NspI RCATGY 2 cut(s) 100, 634
NspV TTCGAA 1 cut(s) 224
PciI ACATGT 1 cut(s) 630
PctI GAATGC 1 cut(s) 684
PfeI GAWTC 4 cut(s) 549, 660, 947, 962
PflFI GACNNNGTC 1 cut(s) 7
PflMI CCANNNNNTGG 1 cut(s) 337
PkrI GCNGC 5 cut(s) 141, 301, 434, 536, 926
PleI GAGTC 2 cut(s) 68, 193
PpsI GAGTC 2 cut(s) 68, 193
PscI ACATGT 1 cut(s) 630
PshBI ATTAAT 1 cut(s) 858
Psp124BI GAGCTC 1 cut(s) 777
Psp6I CCWGG 1 cut(s) 271
PspEI GGTNACC 1 cut(s) 748
PspGI CCWGG 1 cut(s) 271
PspPI GGNCC 3 cut(s) 266, 340, 499
PstI CTGCAG 1 cut(s) 760
PsuI RGATCY 1 cut(s) 903
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
RseI CAYNNNNRTG 1 cut(s) 629
SacI GAGCTC 1 cut(s) 777
SalI GTCGAC 1 cut(s) 468
SaqAI TTAA 3 cut(s) 318, 731, 858
SatI GCNGC 5 cut(s) 140, 300, 433, 535, 925
Sau3AI GATC 5 cut(s) 45, 110, 208, 883, 903
Sau96I GGNCC 3 cut(s) 266, 340, 499
SchI GAGTC 2 cut(s) 68, 194
ScrFI CCNGG 2 cut(s) 273, 606
SduI GDGCHC 4 cut(s) 104, 624, 743, 777
SexAI ACCWGGT 1 cut(s) 271
SfaNI GCATC 3 cut(s) 151, 781, 880
SfcI CTRYAG 1 cut(s) 756
SfuI TTCGAA 1 cut(s) 224
SinI GGWCC 2 cut(s) 266, 340
SmiMI CAYNNNNRTG 1 cut(s) 629
SmlI CTYRAG 3 cut(s) 34, 317, 873
SmoI CTYRAG 3 cut(s) 34, 317, 873
Sse9I AATT 9 cut(s) 199, 310, 351, 368, 378, 484, 720, 855, 967
SsiI CCGC 4 cut(s) 131, 537, 651, 714
SspMI CTAG 1 cut(s) 584
SstI GAGCTC 1 cut(s) 777
StyD4I CCNGG 2 cut(s) 271, 604
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 3 cut(s) 86, 365, 914
TaqI TCGA 6 cut(s) 44, 211, 217, 224, 469, 610
TasI AATT 9 cut(s) 199, 310, 351, 368, 378, 484, 720, 855, 967
TfiI GAWTC 4 cut(s) 549, 660, 947, 962
Tru1I TTAA 3 cut(s) 318, 731, 858
Tru9I TTAA 3 cut(s) 318, 731, 858
TscAI CASTG 4 cut(s) 89, 187, 649, 748
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 5 cut(s) 139, 299, 432, 534, 924
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 3 cut(s) 149, 502, 879
TspRI CASTG 4 cut(s) 89, 187, 649, 748
Tth111I GACNNNGTC 1 cut(s) 7
Van91I CCANNNNNTGG 1 cut(s) 337
Vha464I CTTAAG 1 cut(s) 317
VneI GTGCAC 2 cut(s) 100, 620
VpaK11BI GGWCC 2 cut(s) 266, 340
VspI ATTAAT 1 cut(s) 858
XapI RAATTY 3 cut(s) 199, 351, 378
XceI RCATGY 2 cut(s) 100, 634
XmiI GTMKAC 1 cut(s) 469
XspI CTAG 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.