Rmu_co8416275.1_g000001

Domain associated at C-terminal with AAA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8416275.1
OG0000471
Physical Location & Seq
Forward (+)
154 .. 1377
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8416275.1_g000001.1.cds

Sequence Viewer

Length: 1133 bp
atgcccacaacagcatcgtccttgttctccgcctatgcttccttcactgcactcatcatgttggtcaagtccatggcggaccaactcatgtcactcatccctcctccactccgctcatacttgtcctcaatcctccaccacttctatgcccctcgctccgctgacctcactctcatcgtggacgagaagtgtggtcatatgataaaccaagtctatgaagccgtggaggtctacctcaagaccaagatcagtccactcaacgagcgtctgcgagtgagcagaacaccaggacagaaaactctcagcattaccatcgacagaaacgaagagatcatcgactactccgacaacatcacactaaagtggcgttatgtgtgcacagaagcacaaaaaggtgggggtggaccgggtggtgacaaggaaaagcgcaagtttgagctcactttcaacaagaaacacaaggccgaggtgatagactcctacctacaccatgtgttggctcgggctgatgcacttaggcaagaggaaaaggttctcaagcttgcttcccaaaattcgggtagttccatagatctcgagcacccttcaactttcgacacactggctatggaccccaagctcaagagaatgattatcgaggatttggacaggttcttaaggaggaaggagttttataagaaggttggcaaggcttggaaaagaggttacttgttgtatggtccacctggtactggaaaatcaagcttgattgcagccatggctaattatcttaagtttgatgtccatgatttggacctcagtagaattttcaacaaccgtgaattgaggagaattctgctgtcttcttcaaatcgttctattttggtcattgaggacattgattgcagcgtgcaaatagaaaaccggaaagaggagaaaagtcgacaatctaataccaattttactctctcgggcctactgaacttcattgatggtctgtggtcaagctgcggtgatgggagaatcattgtgttcaccaccaaccacaaggacaaactagaccctgcattgttgcgtcccggtcgaatggatgtgcacattcacatgtcgtattgcactgcgagcgggttcagaatcttggcctctaactacct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

378

Amino Acids

42.96

Weight (kDa)

9.21

Isoelectric Point (pI)

52.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18190 AT2G18193
fragaria_vesca FvH4_1g12130 FvH4_1g12690 FvH4_1g12700 FvH4_1g12712 FvH4_1g12716 FvH4_1g12731
malus_domestica MD02G1141300.v1.1 MD02G1141400.v1.1 MD02G1141600.v1.1 MD02G1141800.v1.1 MD02G1142200.v1.1 MD15G1254200.v1.1
prunus_persica Prupe.7G159500_v2.0.a1 Prupe.7G159600_v2.0.a1 Prupe.7G165500_v2.0.a1
pyrus_communis pycom02g11130 pycom02g11150 pycom02g11160 pycom02g11180 pycom15g22350
rosa_chinensis RchiOBHm_Chr2g0099791 RchiOBHm_Chr2g0099801 RchiOBHm_Chr2g0100651 RchiOBHm_Chr2g0100681 RchiOBHm_Chr2g0100691 RchiOBHm_Chr2g0100701 RchiOBHm_Chr2g0100721 RchiOBHm_Chr2g0100801 RchiOBHm_Chr3g0459141
rosa_laevigata RLG00000016914 RLG00000016915 RLG00000016997 RLG00000016998 RLG00000017000 RLG00000017002 RLG00000017012 RLG00000025114
rosa_multiflora Rmu_co8416275.1_g000001 Rmu_sc0001187.1_g000004 Rmu_sc0001497.1_g000006 Rmu_sc0001659.1_g000004 Rmu_sc0001659.1_g000006 Rmu_sc0001659.1_g000008 Rmu_sc0001659.1_g000010 Rmu_sc0008864.1_g000008 Rmu_sc0028022.1_g000001
rosa_roxburghii Rroxscaffold_2G00141850 Rroxscaffold_2G00141930 Rroxscaffold_2G00141940 Rroxscaffold_2G00141950 Rroxscaffold_2G00141960 Rroxscaffold_2G00141970
rosa_rugosa Rorug02G0091800 Rorug02G0091800 Rorug02G0091800 Rorug02G0091900 Rorug02G0092900 Rorug03G0033500
rosa_samantha Rh2BG135600 Rh2BG143900 Rh2BG144000 Rh2BG144200 Rh2BG144300 Rh2BG144400 Rh2BG144500 Rh2BG145500 Rh2CG136900 Rh2CG137000 Rh2CG144800 Rh2CG145000 Rh2CG145100 Rh2CG145200 Rh2CG145500 Rh2CG146400 Rh2DG137400 Rh2DG137500 Rh2DG144300 Rh2DG144500 Rh2DG144600 Rh2DG144700 Rh2DG145000 Rh2DG145900 Rh3BG094700 Rh3DG095300
rosa_wichuraiana Rw2G010920 Rw2G010950 Rw2G010990 Rw3G007860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 675
AccB7I CCANNNNNTGG 2 cut(s) 496, 790
AccBSI CCGCTC 2 cut(s) 114, 1104
AccI GTMKAC 2 cut(s) 231, 922
AciI CCGC 6 cut(s) 30, 77, 112, 159, 990, 1104
AcsI RAATTY 3 cut(s) 553, 804, 831
AdeI CACNNNGTG 1 cut(s) 493
AfaI GTAC 1 cut(s) 730
AfiI CCNNNNNNNGG 5 cut(s) 496, 556, 731, 790, 910
AflII CTTAAG 2 cut(s) 655, 770
AflIII ACRYGT 1 cut(s) 1083
AgsI TTSAA 4 cut(s) 448, 588, 811, 849
AjnI CCWGG 2 cut(s) 286, 724
AleI CACNNNNGTG 1 cut(s) 361
AluBI AGCT 5 cut(s) 439, 541, 619, 744, 987
AluI AGCT 5 cut(s) 439, 541, 619, 744, 987
Alw21I GWGCWC 4 cut(s) 380, 441, 582, 1077
Alw44I GTGCAC 2 cut(s) 376, 1073
Ama87I CYCGRG 3 cut(s) 501, 575, 949
AoxI GGCC 3 cut(s) 462, 952, 1119
ApaLI GTGCAC 2 cut(s) 376, 1073
ApeKI GCWGC 3 cut(s) 752, 885, 987
ApoI RAATTY 3 cut(s) 553, 804, 831
Asp700I GAANNNNTTC 1 cut(s) 531
AspLEI GCGC 1 cut(s) 429
AspS9I GGNCC 6 cut(s) 79, 404, 610, 719, 793, 952
AsuC2I CCSGG 2 cut(s) 408, 1059
AsuHPI GGTGA 4 cut(s) 425, 481, 1004, 1006
AvaI CYCGRG 3 cut(s) 501, 575, 949
AvaII GGWCC 5 cut(s) 79, 404, 610, 719, 793
BaeGI GKGCMC 2 cut(s) 380, 1077
BanII GRGCYC 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 834
Bbv12I GWGCWC 4 cut(s) 380, 441, 582, 1077
BbvI GCAGC 3 cut(s) 764, 897, 974
BccI CCATC 3 cut(s) 320, 965, 989
BceAI ACGGC 1 cut(s) 206
BcgI CGANNNNNNTGC 2 cut(s) 295, 329
BciT130I CCWGG 2 cut(s) 288, 726
BcnI CCSGG 2 cut(s) 408, 1059
BfaI CTAG 1 cut(s) 1037
BfrI CTTAAG 2 cut(s) 655, 770
BglII AGATCT 1 cut(s) 571
BisI GCNGC 3 cut(s) 753, 886, 988
BlsI GCNGC 3 cut(s) 754, 887, 989
Bme1390I CCNGG 4 cut(s) 288, 408, 726, 1059
Bme18I GGWCC 5 cut(s) 79, 404, 610, 719, 793
BmeT110I CYCGRG 3 cut(s) 501, 575, 949
BmgT120I GGNCC 6 cut(s) 79, 404, 610, 719, 793, 952
BmiI GGNNCC 1 cut(s) 612
BmrFI CCNGG 4 cut(s) 288, 408, 726, 1059
BmsI GCATC 2 cut(s) 23, 499
BpiI GAAGAC 1 cut(s) 834
BpuEI CTTGAG 3 cut(s) 221, 521, 605
BpuMI CCSGG 2 cut(s) 408, 1059
BsaJI CCNNGG 4 cut(s) 72, 222, 465, 756
BsaWI WCCGGW 1 cut(s) 903
Bsc4I CCNNNNNNNGG 5 cut(s) 496, 556, 731, 790, 910
Bse1I ACTGG 2 cut(s) 606, 736
BseBI CCWGG 2 cut(s) 288, 726
BseDI CCNNGG 4 cut(s) 72, 222, 465, 756
BseGI GGATG 2 cut(s) 96, 1075
BseLI CCNNNNNNNGG 5 cut(s) 496, 556, 731, 790, 910
BseMII CTCAG 2 cut(s) 316, 811
BseNI ACTGG 2 cut(s) 606, 736
BseRI GAGGAG 3 cut(s) 93, 841, 926
BseSI GKGCMC 2 cut(s) 380, 1077
BseXI GCAGC 3 cut(s) 764, 897, 974
BsgI GTGCAG 1 cut(s) 33
Bsh1285I CGRYCG 1 cut(s) 1063
BshFI GGCC 3 cut(s) 464, 954, 1121
BsiEI CGRYCG 1 cut(s) 1063
BsiHKAI GWGCWC 4 cut(s) 380, 441, 582, 1077
BsiHKCI CYCGRG 3 cut(s) 501, 575, 949
BsiSI CCGG 3 cut(s) 407, 904, 1059
BslFI GGGAC 1 cut(s) 1041
BslI CCNNNNNNNGG 5 cut(s) 496, 556, 731, 790, 910
BsmFI GGGAC 1 cut(s) 1041
BsnI GGCC 3 cut(s) 464, 954, 1121
BsoBI CYCGRG 3 cut(s) 501, 575, 949
Bsp1286I GDGCHC 4 cut(s) 380, 441, 582, 1077
Bsp143I GATC 3 cut(s) 246, 330, 571
Bsp19I CCATGG 2 cut(s) 72, 756
BspACI CCGC 6 cut(s) 30, 77, 112, 159, 990, 1104
BspANI GGCC 3 cut(s) 464, 954, 1121
BspCNI CTCAG 2 cut(s) 315, 810
BspLI GGNNCC 1 cut(s) 612
BspTI CTTAAG 2 cut(s) 655, 770
BsrBI CCGCTC 2 cut(s) 114, 1104
BsrI ACTGG 2 cut(s) 606, 736
BssECI CCNNGG 4 cut(s) 72, 222, 465, 756
BssMI GATC 3 cut(s) 246, 330, 571
BssT1I CCWWGG 2 cut(s) 72, 756
Bst2UI CCWGG 2 cut(s) 288, 726
Bst4CI ACNGT 1 cut(s) 818
Bst6I CTCTTC 1 cut(s) 321
BstAFI CTTAAG 2 cut(s) 655, 770
BstC8I GCNNGC 3 cut(s) 543, 890, 1102
BstDEI CTNAG 3 cut(s) 302, 515, 797
BstDSI CCRYGG 3 cut(s) 72, 222, 756
BstF5I GGATG 2 cut(s) 96, 1075
BstHHI GCGC 1 cut(s) 429
BstKTI GATC 3 cut(s) 249, 333, 574
BstMBI GATC 3 cut(s) 246, 330, 571
BstMCI CGRYCG 1 cut(s) 1063
BstMWI GCNNNNNNNGC 2 cut(s) 758, 1101
BstNI CCWGG 2 cut(s) 288, 726
BstNSI RCATGY 1 cut(s) 1087
BstSCI CCNGG 4 cut(s) 286, 406, 724, 1057
BstSLI GKGCMC 2 cut(s) 380, 1077
BstV1I GCAGC 3 cut(s) 764, 897, 974
BstV2I GAAGAC 1 cut(s) 834
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
BsuRI GGCC 3 cut(s) 464, 954, 1121
BtgI CCRYGG 3 cut(s) 72, 222, 756
BtsCI GGATG 2 cut(s) 96, 1075
BtsI GCAGTG 2 cut(s) 45, 1095
BtsIMutI CAGTG 3 cut(s) 45, 599, 1095
Cac8I GCNNGC 3 cut(s) 543, 890, 1102
CfoI GCGC 1 cut(s) 429
Cfr13I GGNCC 6 cut(s) 79, 404, 610, 719, 793, 952
CseI GACGC 2 cut(s) 254, 1043
CsiI ACCWGGT 1 cut(s) 724
Csp6I GTAC 1 cut(s) 729
CviAII CATG 7 cut(s) 58, 73, 88, 491, 757, 785, 1084
CviQI GTAC 1 cut(s) 729
DdeI CTNAG 3 cut(s) 302, 515, 797
DpnI GATC 3 cut(s) 248, 332, 573
DpnII GATC 3 cut(s) 246, 330, 571
DraIII CACNNNGTG 1 cut(s) 493
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
EciI GGCGGA 2 cut(s) 19, 92
Ecl136II GAGCTC 1 cut(s) 439
Eco130I CCWWGG 2 cut(s) 72, 756
Eco24I GRGCYC 1 cut(s) 441
Eco47I GGWCC 5 cut(s) 79, 404, 610, 719, 793
Eco53kI GAGCTC 1 cut(s) 439
Eco88I CYCGRG 3 cut(s) 501, 575, 949
EcoICRI GAGCTC 1 cut(s) 439
EcoRI GAATTC 1 cut(s) 831
EcoRII CCWGG 2 cut(s) 286, 724
EcoT14I CCWWGG 2 cut(s) 72, 756
EcoT38I GRGCYC 1 cut(s) 441
ErhI CCWWGG 2 cut(s) 72, 756
FaeI CATG 7 cut(s) 61, 76, 91, 494, 760, 788, 1087
FaqI GGGAC 1 cut(s) 1041
FatI CATG 7 cut(s) 57, 72, 87, 490, 756, 784, 1083
FauI CCCGC 1 cut(s) 1097
FauNDI CATATG 1 cut(s) 198
FblI GTMKAC 2 cut(s) 231, 922
Fnu4HI GCNGC 3 cut(s) 753, 886, 988
FokI GGATG 2 cut(s) 83, 1082
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 3 cut(s) 753, 886, 988
FspBI CTAG 1 cut(s) 1037
GlaI GCGC 1 cut(s) 428
GluI GCNGC 3 cut(s) 753, 886, 988
HaeIII GGCC 3 cut(s) 464, 954, 1121
HapII CCGG 3 cut(s) 407, 904, 1059
HgaI GACGC 2 cut(s) 254, 1043
HhaI GCGC 1 cut(s) 429
Hin1II CATG 7 cut(s) 61, 76, 91, 494, 760, 788, 1087
Hin6I GCGC 1 cut(s) 427
HinP1I GCGC 1 cut(s) 427
HincII GTYRAC 1 cut(s) 923
HindII GTYRAC 1 cut(s) 923
HindIII AAGCTT 2 cut(s) 539, 742
HinfI GANTC 3 cut(s) 476, 1002, 1113
HpaII CCGG 3 cut(s) 407, 904, 1059
HphI GGTGA 4 cut(s) 425, 481, 1004, 1006
Hpy166II GTNNAC 9 cut(s) 181, 232, 254, 378, 404, 722, 923, 1014, 1075
Hpy188I TCNGA 2 cut(s) 346, 1112
Hpy188III TCNNGA 3 cut(s) 238, 575, 622
Hpy8I GTNNAC 9 cut(s) 181, 232, 254, 378, 404, 722, 923, 1014, 1075
HpyAV CCTTC 4 cut(s) 52, 594, 658, 673
HpyCH4III ACNGT 1 cut(s) 818
HpyCH4V TGCA 9 cut(s) 50, 378, 512, 752, 885, 892, 1046, 1075, 1095
HpyF10VI GCNNNNNNNGC 2 cut(s) 758, 1101
HpyF3I CTNAG 3 cut(s) 302, 515, 797
Hsp92II CATG 7 cut(s) 61, 76, 91, 494, 760, 788, 1087
HspAI GCGC 1 cut(s) 427
Kzo9I GATC 3 cut(s) 246, 330, 571
LmnI GCTCC 1 cut(s) 161
Lsp1109I GCAGC 3 cut(s) 764, 897, 974
LweI GCATC 2 cut(s) 23, 499
MabI ACCWGGT 1 cut(s) 724
MaeI CTAG 1 cut(s) 1037
MaeIII GTNAC 3 cut(s) 90, 413, 704
MalI GATC 3 cut(s) 248, 332, 573
MbiI CCGCTC 2 cut(s) 114, 1104
MboI GATC 3 cut(s) 246, 330, 571
MboII GAAGA 3 cut(s) 338, 834, 837
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 4 cut(s) 380, 441, 582, 1077
MluCI AATT 6 cut(s) 553, 763, 804, 821, 831, 937
MlyI GAGTC 1 cut(s) 470
MmeI TCCRAC 1 cut(s) 369
MroXI GAANNNNTTC 1 cut(s) 531
MseI TTAA 2 cut(s) 656, 771
MslI CAYNNNNRTG 3 cut(s) 144, 361, 1082
MspA1I CMGCKG 1 cut(s) 161
MspCI CTTAAG 2 cut(s) 655, 770
MspI CCGG 3 cut(s) 407, 904, 1059
MspR9I CCNGG 4 cut(s) 288, 408, 726, 1059
MvaI CCWGG 2 cut(s) 288, 726
MwoI GCNNNNNNNGC 2 cut(s) 758, 1101
NciI CCSGG 2 cut(s) 408, 1059
NcoI CCATGG 2 cut(s) 72, 756
NdeI CATATG 1 cut(s) 198
NdeII GATC 3 cut(s) 246, 330, 571
NlaIII CATG 7 cut(s) 61, 76, 91, 494, 760, 788, 1087
NlaIV GGNNCC 1 cut(s) 612
NmeAIII GCCGAG 1 cut(s) 490
NmuCI GTSAC 2 cut(s) 90, 413
NspI RCATGY 1 cut(s) 1087
OliI CACNNNNGTG 1 cut(s) 361
PaeR7I CTCGAG 1 cut(s) 575
PciI ACATGT 1 cut(s) 1083
PcsI WCGNNNNNNNCGW 2 cut(s) 321, 342
PdmI GAANNNNTTC 1 cut(s) 531
PfeI GAWTC 2 cut(s) 1002, 1113
PflMI CCANNNNNTGG 2 cut(s) 496, 790
PkrI GCNGC 3 cut(s) 754, 887, 989
PleI GAGTC 1 cut(s) 470
PpsI GAGTC 1 cut(s) 470
PscI ACATGT 1 cut(s) 1083
PsiI TTATAA 1 cut(s) 675
Psp124BI GAGCTC 1 cut(s) 441
Psp6I CCWGG 2 cut(s) 286, 724
PspGI CCWGG 2 cut(s) 286, 724
PspN4I GGNNCC 1 cut(s) 612
PspPI GGNCC 6 cut(s) 79, 404, 610, 719, 793, 952
PsuI RGATCY 1 cut(s) 571
RsaI GTAC 1 cut(s) 730
RsaNI GTAC 1 cut(s) 729
RseI CAYNNNNRTG 3 cut(s) 144, 361, 1082
SacI GAGCTC 1 cut(s) 441
SalI GTCGAC 1 cut(s) 921
SaqAI TTAA 2 cut(s) 656, 771
SatI GCNGC 3 cut(s) 753, 886, 988
Sau3AI GATC 3 cut(s) 246, 330, 571
Sau96I GGNCC 6 cut(s) 79, 404, 610, 719, 793, 952
SchI GAGTC 1 cut(s) 470
ScrFI CCNGG 4 cut(s) 288, 408, 726, 1059
SduI GDGCHC 4 cut(s) 380, 441, 582, 1077
SexAI ACCWGGT 1 cut(s) 724
SfaNI GCATC 2 cut(s) 23, 499
Sfr274I CTCGAG 1 cut(s) 575
SinI GGWCC 5 cut(s) 79, 404, 610, 719, 793
SlaI CTCGAG 1 cut(s) 575
SmiMI CAYNNNNRTG 3 cut(s) 144, 361, 1082
SmlI CTYRAG 6 cut(s) 236, 536, 575, 620, 655, 770
SmoI CTYRAG 6 cut(s) 236, 536, 575, 620, 655, 770
Sse9I AATT 6 cut(s) 553, 763, 804, 821, 831, 937
SsiI CCGC 6 cut(s) 30, 77, 112, 159, 990, 1104
SspMI CTAG 1 cut(s) 1037
SstI GAGCTC 1 cut(s) 441
StyD4I CCNGG 4 cut(s) 286, 406, 724, 1057
StyI CCWWGG 2 cut(s) 72, 756
TaaI ACNGT 1 cut(s) 818
TaqI TCGA 7 cut(s) 315, 336, 576, 594, 636, 922, 1063
TasI AATT 6 cut(s) 553, 763, 804, 821, 831, 937
TfiI GAWTC 2 cut(s) 1002, 1113
Tru1I TTAA 2 cut(s) 656, 771
Tru9I TTAA 2 cut(s) 656, 771
TscAI CASTG 3 cut(s) 52, 606, 1102
TseFI GTSAC 2 cut(s) 90, 413
TseI GCWGC 3 cut(s) 752, 885, 987
Tsp45I GTSAC 2 cut(s) 90, 413
TspDTI ATGAA 2 cut(s) 231, 955
TspRI CASTG 3 cut(s) 52, 606, 1102
Van91I CCANNNNNTGG 2 cut(s) 496, 790
Vha464I CTTAAG 2 cut(s) 655, 770
VneI GTGCAC 2 cut(s) 376, 1073
VpaK11BI GGWCC 5 cut(s) 79, 404, 610, 719, 793
XapI RAATTY 3 cut(s) 553, 804, 831
XceI RCATGY 1 cut(s) 1087
XhoI CTCGAG 1 cut(s) 575
XmiI GTMKAC 2 cut(s) 231, 922
XmnI GAANNNNTTC 1 cut(s) 531
XspI CTAG 1 cut(s) 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.