RchiOBHm_Chr2g0100701

Domain associated at C-terminal with AAA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000471
Physical Location & Seq
Forward (+)
12561836 .. 12564613
2778 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47532

Sequence Viewer

Length: 1509 bp
ATGTATCCTCTGAATCTCAGAGAGATGCCCACAACAGCATCGTCCTTGTTCTCCGCCTATGCTTCCTTCACTGCACTCATCATGTTGGTCAAGTCCATGGCGGACCAACTCATGTCACTCATCCCTCCTCCACTCCGCTCATACTTGTCCTCAATCCTCCACCACTTCTATGCCCCTCGCTCCGCTGACCTCACTCTCATCGTGGACGAGAAGTGTGGTCATATGATAAACCAAGTCTATGAAGCCGTGGAGGTCTACCTCAAGACCAAGATCAGTCCACTCAACGAGCGTCTGCGAGTGAGCAGAACACCCGGACAGAAAACTCTCAGCATTACCATCGACAGAAACGAAGAGATCATCGACTACTTCGACAACATCACACTAAAGTGGCGTTATGTGTGCACTGAAGCAAAAAAAGGTGGGGGTGGACCGGGTGGTGACAAGGAAAAGCGCAAGTTTGAGCTTACTTTCAACAAGAAACACAAGGTCGAGGTGATAGACTCGTACCTACACAATGTGTTGGATCGGGCTGATGCACTTAGACAAGAGGAAAAGGTCCTCAAGCTTGCTTCCCAAAATTCGGGTAGTTCCATAGATCTCCAGCACCCTTCAACTTTTGACACACTGGCTATGGACCCCAAGCTCAAGAGAATGATTATCGAGGATTTGGACAGGTTCTTGAGGAGGAAGGAGTTTTACAAGAAGGTTGGCAAGGCTTGGAAAAGAGGTTACTTGTTGTATGGTCCACCTGGTACTGGAAAATCAAGCTTGATTGCAGCCATGGCTAATTATCTCAAGTTTGATGTCCATGATTTGGACCTCAGTAGAATTTTCAACAACAGTGAATTGAGGAGGATTCTGCTGTCTTCTTCAAATCGTTCTATTTTGGTCATTGAGGACATTGATTGCAGCGTGCAAATAGAGAACCGGAAAGAGGAGAAAAGTCGACAATCTAATACCAATTTTACTCTCTCGGGCCTACTGAACTTCATAGATGGTCTGTGGTCAAGCAGCGGTGATGGGAGAATCATTGTGTTCACCACCAACCATAAGGACAAACTAGACCCTGCATTGTTGCGTCCCGGTCGAATGGATGTGCACATTCACATGTCGCATTGCACTGCGAGCGGGTTCAGAATCTTGGCCTCTAACTACCTCGGCATTCAAGAAAGCAACCCTCATAACCTTTGCGGAGAAATTGAAGGCTTAATAGAGAGCACTGAGGTAACCCCTGCAGAGGTTGCTGAGGAGCTCTTGAAGAGTGATGATGCTGATGTTGTTCTTGAAGGACTTGTTGATTTCCTGAAAAGAAAGAAGGAAGAGAACAATAAAATTGGTGATGAAGGAACTCAAGAGCTGATCAAGATGCAGAAAAAGGGATCTCATCCGGTTGCGATAACTGCGATGATGGAAGTGGAGAAGAATGCGACGATGGAAGTGGTTCAGAATCTTCTCTTGAAAATAATTGAGTATGACAGCCTCTCTTCCCCTGGTCTCATGAATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

502

Amino Acids

56.7

Weight (kDa)

6.69

Isoelectric Point (pI)

52.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 41 - 134 3.6e-22 Domain associated at C-terminal with AAA
AAA PF00004 244 - 370 6e-22 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 373 - 443 9.4e-22 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18190 AT2G18193
fragaria_vesca FvH4_1g12130 FvH4_1g12690 FvH4_1g12700 FvH4_1g12712 FvH4_1g12716 FvH4_1g12731
malus_domestica MD02G1141300.v1.1 MD02G1141400.v1.1 MD02G1141600.v1.1 MD02G1141800.v1.1 MD02G1142200.v1.1 MD15G1254200.v1.1
prunus_persica Prupe.7G159500_v2.0.a1 Prupe.7G159600_v2.0.a1 Prupe.7G165500_v2.0.a1
pyrus_communis pycom02g11130 pycom02g11150 pycom02g11160 pycom02g11180 pycom15g22350
rosa_chinensis RchiOBHm_Chr2g0099791 RchiOBHm_Chr2g0099801 RchiOBHm_Chr2g0100651 RchiOBHm_Chr2g0100681 RchiOBHm_Chr2g0100691 RchiOBHm_Chr2g0100701 RchiOBHm_Chr2g0100721 RchiOBHm_Chr2g0100801 RchiOBHm_Chr3g0459141
rosa_laevigata RLG00000016914 RLG00000016915 RLG00000016997 RLG00000016998 RLG00000017000 RLG00000017002 RLG00000017012 RLG00000025114
rosa_multiflora Rmu_co8416275.1_g000001 Rmu_sc0001187.1_g000004 Rmu_sc0001497.1_g000006 Rmu_sc0001659.1_g000004 Rmu_sc0001659.1_g000006 Rmu_sc0001659.1_g000008 Rmu_sc0001659.1_g000010 Rmu_sc0008864.1_g000008 Rmu_sc0028022.1_g000001
rosa_roxburghii Rroxscaffold_2G00141850 Rroxscaffold_2G00141930 Rroxscaffold_2G00141940 Rroxscaffold_2G00141950 Rroxscaffold_2G00141960 Rroxscaffold_2G00141970
rosa_rugosa Rorug02G0091800 Rorug02G0091800 Rorug02G0091800 Rorug02G0091900 Rorug02G0092900 Rorug03G0033500
rosa_samantha Rh2BG135600 Rh2BG143900 Rh2BG144000 Rh2BG144200 Rh2BG144300 Rh2BG144400 Rh2BG144500 Rh2BG145500 Rh2CG136900 Rh2CG137000 Rh2CG144800 Rh2CG145000 Rh2CG145100 Rh2CG145200 Rh2CG145500 Rh2CG146400 Rh2DG137400 Rh2DG137500 Rh2DG144300 Rh2DG144500 Rh2DG144600 Rh2DG144700 Rh2DG145000 Rh2DG145900 Rh3BG094700 Rh3DG095300
rosa_wichuraiana Rw2G010920 Rw2G010950 Rw2G010990 Rw3G007860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 814
AccBSI CCGCTC 2 cut(s) 138, 1128
AccI GTMKAC 2 cut(s) 255, 946
AciI CCGC 7 cut(s) 54, 101, 136, 183, 1014, 1128, 1191
AclWI GGATC 2 cut(s) 531, 1387
AcsI RAATTY 2 cut(s) 577, 828
AcuI CTGAAG 1 cut(s) 426
AdeI CACNNNGTG 1 cut(s) 517
AfaI GTAC 2 cut(s) 506, 754
AfiI CCNNNNNNNGG 5 cut(s) 580, 755, 814, 934, 1237
AflIII ACRYGT 1 cut(s) 1107
AgsI TTSAA 9 cut(s) 472, 612, 835, 873, 1166, 1202, 1258, 1286, 1459
AjnI CCWGG 2 cut(s) 748, 1489
AleI CACNNNNGTG 1 cut(s) 385
AluBI AGCT 6 cut(s) 463, 565, 643, 768, 1252, 1357
AluI AGCT 6 cut(s) 463, 565, 643, 768, 1252, 1357
Alw21I GWGCWC 4 cut(s) 404, 1101, 1220, 1254
Alw26I GTCTC 1 cut(s) 1499
Alw44I GTGCAC 2 cut(s) 400, 1097
AlwI GGATC 2 cut(s) 531, 1387
Ama87I CYCGRG 1 cut(s) 973
AoxI GGCC 2 cut(s) 976, 1143
ApaLI GTGCAC 2 cut(s) 400, 1097
ApeKI GCWGC 3 cut(s) 776, 909, 1011
ApoI RAATTY 2 cut(s) 577, 828
Asp700I GAANNNNTTC 1 cut(s) 1440
AspLEI GCGC 1 cut(s) 453
AspS9I GGNCC 7 cut(s) 103, 428, 556, 634, 743, 817, 976
AsuC2I CCSGG 3 cut(s) 312, 432, 1083
AsuHPI GGTGA 5 cut(s) 449, 505, 1028, 1030, 1349
AvaI CYCGRG 1 cut(s) 973
AvaII GGWCC 6 cut(s) 103, 428, 556, 634, 743, 817
BaeGI GKGCMC 2 cut(s) 404, 1101
BanII GRGCYC 1 cut(s) 1254
BarI GAAGNNNNNNTAC 2 cut(s) 680, 712
BbsI GAAGAC 1 cut(s) 858
Bbv12I GWGCWC 4 cut(s) 404, 1101, 1220, 1254
BbvCI CCTCAGC 1 cut(s) 1245
BbvI GCAGC 3 cut(s) 788, 921, 1023
BccI CCATC 5 cut(s) 344, 989, 1013, 1402, 1426
BceAI ACGGC 1 cut(s) 230
BcgI CGANNNNNNTGC 2 cut(s) 319, 353
BciT130I CCWGG 2 cut(s) 750, 1491
BciVI GTATCC 1 cut(s) 15
BclI TGATCA 1 cut(s) 1359
BcnI CCSGG 3 cut(s) 312, 432, 1083
BcoDI GTCTC 1 cut(s) 1499
BfaI CTAG 1 cut(s) 1061
BfmI CTRYAG 1 cut(s) 1233
BfuI GTATCC 1 cut(s) 15
BglII AGATCT 1 cut(s) 595
BisI GCNGC 3 cut(s) 777, 910, 1012
BlsI GCNGC 3 cut(s) 778, 911, 1013
Bme1390I CCNGG 5 cut(s) 312, 432, 750, 1083, 1491
Bme18I GGWCC 6 cut(s) 103, 428, 556, 634, 743, 817
BmeT110I CYCGRG 1 cut(s) 973
BmgT120I GGNCC 7 cut(s) 103, 428, 556, 634, 743, 817, 976
BmiI GGNNCC 1 cut(s) 636
BmrFI CCNGG 5 cut(s) 312, 432, 750, 1083, 1491
BmsI GCATC 5 cut(s) 15, 47, 523, 1258, 1356
BpiI GAAGAC 1 cut(s) 858
BpmI CTGGAG 1 cut(s) 584
Bpu10I CCTNAGC 1 cut(s) 1245
BpuEI CTTGAG 6 cut(s) 245, 545, 629, 700, 779, 1335
BpuMI CCSGG 3 cut(s) 312, 432, 1083
BsaI GGTCTC 1 cut(s) 1499
BsaJI CCNNGG 5 cut(s) 96, 246, 780, 1156, 1489
BsaWI WCCGGW 2 cut(s) 927, 1387
Bsc4I CCNNNNNNNGG 5 cut(s) 580, 755, 814, 934, 1237
Bse1I ACTGG 2 cut(s) 630, 760
Bse3DI GCAATG 1 cut(s) 1114
BseBI CCWGG 2 cut(s) 750, 1491
BseDI CCNNGG 5 cut(s) 96, 246, 780, 1156, 1489
BseGI GGATG 3 cut(s) 120, 1099, 1384
BseLI CCNNNNNNNGG 5 cut(s) 580, 755, 814, 934, 1237
BseMI GCAATG 1 cut(s) 1114
BseMII CTCAG 5 cut(s) 31, 340, 835, 1212, 1236
BseNI ACTGG 2 cut(s) 630, 760
BseRI GAGGAG 5 cut(s) 117, 697, 865, 950, 1262
BseSI GKGCMC 2 cut(s) 404, 1101
BseXI GCAGC 3 cut(s) 788, 921, 1023
BsgI GTGCAG 1 cut(s) 57
Bsh1285I CGRYCG 1 cut(s) 1087
BshFI GGCC 2 cut(s) 978, 1145
BsiEI CGRYCG 1 cut(s) 1087
BsiHKAI GWGCWC 4 cut(s) 404, 1101, 1220, 1254
BsiHKCI CYCGRG 1 cut(s) 973
BsiSI CCGG 5 cut(s) 312, 431, 928, 1083, 1388
BslFI GGGAC 1 cut(s) 1065
BslI CCNNNNNNNGG 5 cut(s) 580, 755, 814, 934, 1237
BsmAI GTCTC 1 cut(s) 1499
BsmFI GGGAC 1 cut(s) 1065
BsmI GAATGC 2 cut(s) 1161, 1429
BsnI GGCC 2 cut(s) 978, 1145
Bso31I GGTCTC 1 cut(s) 1499
BsoBI CYCGRG 1 cut(s) 973
Bsp1286I GDGCHC 4 cut(s) 404, 1101, 1220, 1254
Bsp143I GATC 6 cut(s) 270, 354, 523, 595, 1359, 1379
Bsp19I CCATGG 2 cut(s) 96, 780
BspACI CCGC 7 cut(s) 54, 101, 136, 183, 1014, 1128, 1191
BspANI GGCC 2 cut(s) 978, 1145
BspCNI CTCAG 5 cut(s) 30, 339, 834, 1213, 1237
BspHI TCATGA 1 cut(s) 1497
BspLI GGNNCC 1 cut(s) 636
BspMAI CTGCAG 1 cut(s) 1237
BspPI GGATC 2 cut(s) 531, 1387
BspTNI GGTCTC 1 cut(s) 1499
BsrBI CCGCTC 2 cut(s) 138, 1128
BsrDI GCAATG 1 cut(s) 1114
BsrI ACTGG 2 cut(s) 630, 760
BssECI CCNNGG 5 cut(s) 96, 246, 780, 1156, 1489
BssMI GATC 6 cut(s) 270, 354, 523, 595, 1359, 1379
BssT1I CCWWGG 2 cut(s) 96, 780
Bst2UI CCWGG 2 cut(s) 750, 1491
Bst4CI ACNGT 1 cut(s) 842
Bst6I CTCTTC 4 cut(s) 345, 1253, 1314, 1489
BstAPI GCANNNNNTGC 1 cut(s) 1241
BstC8I GCNNGC 3 cut(s) 567, 914, 1126
BstDEI CTNAG 6 cut(s) 17, 326, 539, 821, 1221, 1245
BstDSI CCRYGG 3 cut(s) 96, 246, 780
BstEII GGTNACC 1 cut(s) 1225
BstF5I GGATG 3 cut(s) 120, 1099, 1384
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 6 cut(s) 273, 357, 526, 598, 1362, 1382
BstMAI GTCTC 1 cut(s) 1499
BstMBI GATC 6 cut(s) 270, 354, 523, 595, 1359, 1379
BstMCI CGRYCG 1 cut(s) 1087
BstMWI GCNNNNNNNGC 4 cut(s) 782, 1125, 1241, 1400
BstNI CCWGG 2 cut(s) 750, 1491
BstNSI RCATGY 1 cut(s) 1111
BstPI GGTNACC 1 cut(s) 1225
BstSCI CCNGG 5 cut(s) 310, 430, 748, 1081, 1489
BstSFI CTRYAG 1 cut(s) 1233
BstSLI GKGCMC 2 cut(s) 404, 1101
BstV1I GCAGC 3 cut(s) 788, 921, 1023
BstV2I GAAGAC 1 cut(s) 858
BstX2I RGATCY 2 cut(s) 595, 1379
BstYI RGATCY 2 cut(s) 595, 1379
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 2 cut(s) 978, 1145
BtgI CCRYGG 3 cut(s) 96, 246, 780
BtgZI GCGATG 1 cut(s) 1418
BtsCI GGATG 3 cut(s) 120, 1099, 1384
BtsI GCAGTG 2 cut(s) 69, 1119
BtsIMutI CAGTG 6 cut(s) 69, 402, 623, 847, 1119, 1218
Cac8I GCNNGC 3 cut(s) 567, 914, 1126
CciI TCATGA 1 cut(s) 1497
CfoI GCGC 1 cut(s) 453
Cfr13I GGNCC 7 cut(s) 103, 428, 556, 634, 743, 817, 976
CseI GACGC 2 cut(s) 278, 1067
CsiI ACCWGGT 1 cut(s) 748
Csp6I GTAC 2 cut(s) 505, 753
CviAII CATG 7 cut(s) 82, 97, 112, 781, 809, 1108, 1498
CviQI GTAC 2 cut(s) 505, 753
DdeI CTNAG 6 cut(s) 17, 326, 539, 821, 1221, 1245
DpnI GATC 6 cut(s) 272, 356, 525, 597, 1361, 1381
DpnII GATC 6 cut(s) 270, 354, 523, 595, 1359, 1379
DraIII CACNNNGTG 1 cut(s) 517
Eam1104I CTCTTC 4 cut(s) 345, 1253, 1314, 1489
EarI CTCTTC 4 cut(s) 345, 1253, 1314, 1489
EciI GGCGGA 2 cut(s) 43, 116
Ecl136II GAGCTC 1 cut(s) 1252
Eco130I CCWWGG 2 cut(s) 96, 780
Eco24I GRGCYC 1 cut(s) 1254
Eco31I GGTCTC 1 cut(s) 1499
Eco47I GGWCC 6 cut(s) 103, 428, 556, 634, 743, 817
Eco53kI GAGCTC 1 cut(s) 1252
Eco57I CTGAAG 1 cut(s) 426
Eco88I CYCGRG 1 cut(s) 973
Eco91I GGTNACC 1 cut(s) 1225
EcoICRI GAGCTC 1 cut(s) 1252
EcoO109I RGGNCCY 1 cut(s) 556
EcoO65I GGTNACC 1 cut(s) 1225
EcoRII CCWGG 2 cut(s) 748, 1489
EcoT14I CCWWGG 2 cut(s) 96, 780
EcoT38I GRGCYC 1 cut(s) 1254
ErhI CCWWGG 2 cut(s) 96, 780
FaeI CATG 7 cut(s) 85, 100, 115, 784, 812, 1111, 1501
FaqI GGGAC 1 cut(s) 1065
FatI CATG 7 cut(s) 81, 96, 111, 780, 808, 1107, 1497
FauI CCCGC 1 cut(s) 1121
FauNDI CATATG 1 cut(s) 222
FbaI TGATCA 1 cut(s) 1359
FblI GTMKAC 2 cut(s) 255, 946
Fnu4HI GCNGC 3 cut(s) 777, 910, 1012
FokI GGATG 3 cut(s) 107, 1106, 1371
FriOI GRGCYC 1 cut(s) 1254
Fsp4HI GCNGC 3 cut(s) 777, 910, 1012
FspBI CTAG 1 cut(s) 1061
GlaI GCGC 1 cut(s) 452
GluI GCNGC 3 cut(s) 777, 910, 1012
GsuI CTGGAG 1 cut(s) 584
HaeIII GGCC 2 cut(s) 978, 1145
HapII CCGG 5 cut(s) 312, 431, 928, 1083, 1388
HgaI GACGC 2 cut(s) 278, 1067
HhaI GCGC 1 cut(s) 453
Hin1II CATG 7 cut(s) 85, 100, 115, 784, 812, 1111, 1501
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HincII GTYRAC 1 cut(s) 947
HindII GTYRAC 1 cut(s) 947
HindIII AAGCTT 2 cut(s) 563, 766
HinfI GANTC 6 cut(s) 13, 500, 856, 1026, 1137, 1447
HpaII CCGG 5 cut(s) 312, 431, 928, 1083, 1388
HphI GGTGA 5 cut(s) 449, 505, 1028, 1030, 1349
Hpy166II GTNNAC 9 cut(s) 205, 256, 278, 402, 428, 746, 947, 1038, 1099
Hpy188I TCNGA 4 cut(s) 12, 20, 1136, 1446
Hpy8I GTNNAC 9 cut(s) 205, 256, 278, 402, 428, 746, 947, 1038, 1099
Hpy99I CGWCG 1 cut(s) 1432
HpyAV CCTTC 8 cut(s) 76, 618, 682, 697, 1196, 1280, 1309, 1337
HpyCH4III ACNGT 1 cut(s) 842
HpyF10VI GCNNNNNNNGC 4 cut(s) 782, 1125, 1241, 1400
HpyF3I CTNAG 6 cut(s) 17, 326, 539, 821, 1221, 1245
Hsp92II CATG 7 cut(s) 85, 100, 115, 784, 812, 1111, 1501
HspAI GCGC 1 cut(s) 451
Ksp22I TGATCA 1 cut(s) 1359
Kzo9I GATC 6 cut(s) 270, 354, 523, 595, 1359, 1379
LmnI GCTCC 2 cut(s) 185, 1249
Lsp1109I GCAGC 3 cut(s) 788, 921, 1023
LweI GCATC 5 cut(s) 15, 47, 523, 1258, 1356
MabI ACCWGGT 1 cut(s) 748
MaeI CTAG 1 cut(s) 1061
MaeIII GTNAC 4 cut(s) 114, 437, 728, 1225
MalI GATC 6 cut(s) 272, 356, 525, 597, 1361, 1381
MbiI CCGCTC 2 cut(s) 138, 1128
MboI GATC 6 cut(s) 270, 354, 523, 595, 1359, 1379
MboII GAAGA 8 cut(s) 362, 858, 861, 1270, 1331, 1432, 1442, 1476
MflI RGATCY 2 cut(s) 595, 1379
MhlI GDGCHC 4 cut(s) 404, 1101, 1220, 1254
MluCI AATT 8 cut(s) 577, 787, 828, 845, 961, 1197, 1332, 1464
MlyI GAGTC 1 cut(s) 494
MmeI TCCRAC 1 cut(s) 501
MroXI GAANNNNTTC 1 cut(s) 1440
MseI TTAA 1 cut(s) 1208
MslI CAYNNNNRTG 3 cut(s) 168, 385, 1106
MspA1I CMGCKG 2 cut(s) 185, 1014
MspI CCGG 5 cut(s) 312, 431, 928, 1083, 1388
MspR9I CCNGG 5 cut(s) 312, 432, 750, 1083, 1491
Mva1269I GAATGC 2 cut(s) 1161, 1429
MvaI CCWGG 2 cut(s) 750, 1491
MwoI GCNNNNNNNGC 4 cut(s) 782, 1125, 1241, 1400
NciI CCSGG 3 cut(s) 312, 432, 1083
NcoI CCATGG 2 cut(s) 96, 780
NdeI CATATG 1 cut(s) 222
NdeII GATC 6 cut(s) 270, 354, 523, 595, 1359, 1379
NlaIII CATG 7 cut(s) 85, 100, 115, 784, 812, 1111, 1501
NlaIV GGNNCC 1 cut(s) 636
NmeAIII GCCGAG 1 cut(s) 1137
NmuCI GTSAC 2 cut(s) 114, 437
NspI RCATGY 1 cut(s) 1111
OliI CACNNNNGTG 1 cut(s) 385
PagI TCATGA 1 cut(s) 1497
PciI ACATGT 1 cut(s) 1107
PcsI WCGNNNNNNNCGW 2 cut(s) 345, 366
PctI GAATGC 2 cut(s) 1161, 1429
PdmI GAANNNNTTC 1 cut(s) 1440
PfeI GAWTC 5 cut(s) 13, 856, 1026, 1137, 1447
PflMI CCANNNNNTGG 1 cut(s) 814
PkrI GCNGC 3 cut(s) 778, 911, 1013
PleI GAGTC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 494
PpuMI RGGWCCY 1 cut(s) 556
PscI ACATGT 1 cut(s) 1107
Psp124BI GAGCTC 1 cut(s) 1254
Psp5II RGGWCCY 1 cut(s) 556
Psp6I CCWGG 2 cut(s) 748, 1489
PspEI GGTNACC 1 cut(s) 1225
PspGI CCWGG 2 cut(s) 748, 1489
PspN4I GGNNCC 1 cut(s) 636
PspPI GGNCC 7 cut(s) 103, 428, 556, 634, 743, 817, 976
PspPPI RGGWCCY 1 cut(s) 556
PstI CTGCAG 1 cut(s) 1237
PsuI RGATCY 2 cut(s) 595, 1379
RsaI GTAC 2 cut(s) 506, 754
RsaNI GTAC 2 cut(s) 505, 753
RseI CAYNNNNRTG 3 cut(s) 168, 385, 1106
SacI GAGCTC 1 cut(s) 1254
SalI GTCGAC 1 cut(s) 945
SaqAI TTAA 1 cut(s) 1208
SatI GCNGC 3 cut(s) 777, 910, 1012
Sau3AI GATC 6 cut(s) 270, 354, 523, 595, 1359, 1379
Sau96I GGNCC 7 cut(s) 103, 428, 556, 634, 743, 817, 976
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 5 cut(s) 312, 432, 750, 1083, 1491
SduI GDGCHC 4 cut(s) 404, 1101, 1220, 1254
SexAI ACCWGGT 1 cut(s) 748
SfaNI GCATC 5 cut(s) 15, 47, 523, 1258, 1356
SfcI CTRYAG 1 cut(s) 1233
SinI GGWCC 6 cut(s) 103, 428, 556, 634, 743, 817
SmiMI CAYNNNNRTG 3 cut(s) 168, 385, 1106
SmlI CTYRAG 6 cut(s) 260, 560, 644, 679, 794, 1350
SmoI CTYRAG 6 cut(s) 260, 560, 644, 679, 794, 1350
Sse9I AATT 8 cut(s) 577, 787, 828, 845, 961, 1197, 1332, 1464
SsiI CCGC 7 cut(s) 54, 101, 136, 183, 1014, 1128, 1191
SspMI CTAG 1 cut(s) 1061
SstI GAGCTC 1 cut(s) 1254
StyD4I CCNGG 5 cut(s) 310, 430, 748, 1081, 1489
StyI CCWWGG 2 cut(s) 96, 780
TaaI ACNGT 1 cut(s) 842
TaqI TCGA 7 cut(s) 339, 360, 369, 489, 660, 946, 1087
TasI AATT 8 cut(s) 577, 787, 828, 845, 961, 1197, 1332, 1464
TfiI GAWTC 5 cut(s) 13, 856, 1026, 1137, 1447
Tru1I TTAA 1 cut(s) 1208
Tru9I TTAA 1 cut(s) 1208
TscAI CASTG 6 cut(s) 76, 409, 630, 847, 1126, 1225
TseFI GTSAC 2 cut(s) 114, 437
TseI GCWGC 3 cut(s) 776, 909, 1011
Tsp45I GTSAC 2 cut(s) 114, 437
TspDTI ATGAA 3 cut(s) 255, 979, 1356
TspRI CASTG 6 cut(s) 76, 409, 630, 847, 1126, 1225
Van91I CCANNNNNTGG 1 cut(s) 814
VneI GTGCAC 2 cut(s) 400, 1097
VpaK11BI GGWCC 6 cut(s) 103, 428, 556, 634, 743, 817
XapI RAATTY 2 cut(s) 577, 828
XceI RCATGY 1 cut(s) 1111
XmiI GTMKAC 2 cut(s) 255, 946
XmnI GAANNNNTTC 1 cut(s) 1440
XspI CTAG 1 cut(s) 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.