Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000471

Physical Location & Seq

Genomic Coordinates Reverse (-)

7879338 .. 7880174

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g11160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCGATGGACCCTGAGCTTAAAACGATGATGAAAAATGATTTGGACAGGTTTGTGAGACGGAGGGAGTTCTATAAGAAGGTGGGGAAGGCTTGGAAAAGAGGCTACTTGCTGTACGGTCCTCCCGGCACTGGAAAATCTAGATCGATCGCGGCCATGGCAAATTATCTTCATTTCCACATATATGATTTGGAGCTTTCTAGTATTTACGGAGACTCGGAATTGAAGAGGGTATTGTTGTCTACTACAAATCGTTCGATTTTAGTAATTGAGGACATTGATTGCAGCATTGATGTCGAAAATCGTGAATCGGAAGAGCAACAACAATCATCTCAAACCAAATTGACGCTTTCGGGCCTATTGAACTTTATTGATGGTTTGTGGTCGAGCTGTGGTGACGAGAGAATTATTGTGTTCACTACCAACCACAAGGATCGGTTAGACCCTGCATTGTTGCGTCCAGGACGAATGGACGTGCACATTCACTTGTCGTATTGCACTGCAAGTGGATTCAAGGTCTTGGCCTCGAACTACCTTGGCATTGGTGACGAAAACCATCATTGGCTTTGTGGGGAAATTGAAGGGTTGATAGAGAGCGCGGAGGTGACCCCTGCAGAGGTTGCTGAGGAGCTCATGAAGAGCGATGACGCTGAAGTGGCGCTCGAAGGACTTGTTGATTTCCTCAAATGTAAGAAGGCCGAGAGGCAGCGAAAAAAGGAGGAAGAGAGTAACCAAATTAAAGATCAGGAAGCAGCAATGCAGAAAACGGATGTTGAGGACAATGTTAACGACGACGGCAAGGGCTCGCTGCATTCGAAAACCTTGAATATGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

279

Amino Acids

31.51

Weight (kDa)

5.22

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	36 - 164	2.2e-20	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	166 - 239	5.2e-23	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18190 AT2G18193
fragaria_vesca	FvH4_1g12130 FvH4_1g12690 FvH4_1g12700 FvH4_1g12712 FvH4_1g12716 FvH4_1g12731
malus_domestica	MD02G1141300.v1.1 MD02G1141400.v1.1 MD02G1141600.v1.1 MD02G1141800.v1.1 MD02G1142200.v1.1 MD15G1254200.v1.1
prunus_persica	Prupe.7G159500_v2.0.a1 Prupe.7G159600_v2.0.a1 Prupe.7G165500_v2.0.a1
pyrus_communis	pycom02g11130 pycom02g11150 pycom02g11160 pycom02g11180 pycom15g22350
rosa_chinensis	RchiOBHm_Chr2g0099791 RchiOBHm_Chr2g0099801 RchiOBHm_Chr2g0100651 RchiOBHm_Chr2g0100681 RchiOBHm_Chr2g0100691 RchiOBHm_Chr2g0100701 RchiOBHm_Chr2g0100721 RchiOBHm_Chr2g0100801 RchiOBHm_Chr3g0459141
rosa_laevigata	RLG00000016914 RLG00000016915 RLG00000016997 RLG00000016998 RLG00000017000 RLG00000017002 RLG00000017012 RLG00000025114
rosa_multiflora	Rmu_co8416275.1_g000001 Rmu_sc0001187.1_g000004 Rmu_sc0001497.1_g000006 Rmu_sc0001659.1_g000004 Rmu_sc0001659.1_g000006 Rmu_sc0001659.1_g000008 Rmu_sc0001659.1_g000010 Rmu_sc0008864.1_g000008 Rmu_sc0028022.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141850 Rroxscaffold_2G00141930 Rroxscaffold_2G00141940 Rroxscaffold_2G00141950 Rroxscaffold_2G00141960 Rroxscaffold_2G00141970
rosa_rugosa	Rorug02G0091800 Rorug02G0091800 Rorug02G0091800 Rorug02G0091900 Rorug02G0092900 Rorug03G0033500
rosa_samantha	Rh2BG135600 Rh2BG143900 Rh2BG144000 Rh2BG144200 Rh2BG144300 Rh2BG144400 Rh2BG144500 Rh2BG145500 Rh2CG136900 Rh2CG137000 Rh2CG144800 Rh2CG145000 Rh2CG145100 Rh2CG145200 Rh2CG145500 Rh2CG146400 Rh2DG137400 Rh2DG137500 Rh2DG144300 Rh2DG144500 Rh2DG144600 Rh2DG144700 Rh2DG145000 Rh2DG145900 Rh3BG094700 Rh3DG095300
rosa_wichuraiana	Rw2G010920 Rw2G010950 Rw2G010990 Rw3G007860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	242
AccII	CGCG	2 cut(s)	152, 599
AciI	CCGC	2 cut(s)	152, 599
AclWI	GGATC	1 cut(s)	441
AcoI	YGGCCR	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	672
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	131, 616
AgsI	TTSAA	5 cut(s)	226, 364, 514, 581, 826
AjiI	CACGTC	1 cut(s)	475
AjnI	CCWGG	1 cut(s)	460
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	4 cut(s)	19, 196, 390, 631
AluI	AGCT	4 cut(s)	19, 196, 390, 631
Alw21I	GWGCWC	2 cut(s)	480, 633
Alw26I	GTCTC	2 cut(s)	52, 207
Alw44I	GTGCAC	1 cut(s)	476
AlwI	GGATC	1 cut(s)	441
AoxI	GGCC	4 cut(s)	153, 355, 522, 696
ApaLI	GTGCAC	1 cut(s)	476
ApeKI	GCWGC	4 cut(s)	285, 706, 752, 808
AspLEI	GCGC	2 cut(s)	599, 661
AspS9I	GGNCC	3 cut(s)	10, 119, 355
AsuC2I	CCSGG	1 cut(s)	126
AsuHPI	GGTGA	3 cut(s)	407, 557, 616
AsuII	TTCGAA	1 cut(s)	815
AvaII	GGWCC	2 cut(s)	10, 119
BaeGI	GKGCMC	1 cut(s)	480
BanII	GRGCYC	2 cut(s)	633, 806
Bbv12I	GWGCWC	2 cut(s)	480, 633
BbvCI	CCTCAGC	1 cut(s)	624
BbvI	GCAGC	4 cut(s)	297, 718, 764, 795
BccI	CCATC	2 cut(s)	368, 564
BceAI	ACGGC	1 cut(s)	811
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	1 cut(s)	462
BcnI	CCSGG	1 cut(s)	126
BcoDI	GTCTC	2 cut(s)	52, 207
BfaI	CTAG	2 cut(s)	141, 201
BfmI	CTRYAG	1 cut(s)	612
BfoI	RGCGCY	1 cut(s)	662
BisI	GCNGC	5 cut(s)	153, 286, 707, 753, 809
BlsI	GCNGC	5 cut(s)	154, 287, 708, 754, 810
Bme1390I	CCNGG	2 cut(s)	126, 462
Bme18I	GGWCC	2 cut(s)	10, 119
BmgBI	CACGTC	1 cut(s)	475
BmgT120I	GGNCC	3 cut(s)	10, 119, 355
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	2 cut(s)	126, 462
Bpu10I	CCTNAGC	2 cut(s)	15, 624
Bpu14I	TTCGAA	1 cut(s)	815
BpuMI	CCSGG	1 cut(s)	126
Bsa29I	ATCGAT	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	156, 535
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 616
Bse1I	ACTGG	1 cut(s)	136
Bse3DI	GCAATG	1 cut(s)	762
BseBI	CCWGG	1 cut(s)	462
BseCI	ATCGAT	1 cut(s)	146
BseDI	CCNNGG	2 cut(s)	156, 535
BseGI	GGATG	1 cut(s)	775
BseLI	CCNNNNNNNGG	2 cut(s)	131, 616
BseMI	GCAATG	1 cut(s)	762
BseMII	CTCAG	2 cut(s)	6, 615
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	641
BseSI	GKGCMC	1 cut(s)	480
BseXI	GCAGC	4 cut(s)	297, 718, 764, 795
Bsh1236I	CGCG	2 cut(s)	152, 599
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	4 cut(s)	155, 357, 524, 698
BshVI	ATCGAT	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	150
BsiHKAI	GWGCWC	2 cut(s)	480, 633
BsiSI	CCGG	1 cut(s)	126
BslI	CCNNNNNNNGG	2 cut(s)	131, 616
BsmAI	GTCTC	2 cut(s)	52, 207
BsmBI	CGTCTC	1 cut(s)	52
BsmI	GAATGC	1 cut(s)	811
BsnI	GGCC	4 cut(s)	155, 357, 524, 698
Bsp119I	TTCGAA	1 cut(s)	815
Bsp1286I	GDGCHC	3 cut(s)	480, 633, 806
Bsp143I	GATC	4 cut(s)	143, 147, 433, 742
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	2 cut(s)	152, 599
BspANI	GGCC	4 cut(s)	155, 357, 524, 698
BspCNI	CTCAG	2 cut(s)	7, 616
BspDI	ATCGAT	1 cut(s)	146
BspFNI	CGCG	2 cut(s)	152, 599
BspHI	TCATGA	1 cut(s)	633
BspLI	GGNNCC	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	616
BspPI	GGATC	1 cut(s)	441
BspQI	GCTCTTC	2 cut(s)	309, 632
BspT104I	TTCGAA	1 cut(s)	815
BsrDI	GCAATG	1 cut(s)	762
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	2 cut(s)	156, 535
BssMI	GATC	4 cut(s)	143, 147, 433, 742
BssT1I	CCWWGG	2 cut(s)	156, 535
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	1 cut(s)	119
Bst6I	CTCTTC	4 cut(s)	221, 309, 632, 717
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstBI	TTCGAA	1 cut(s)	815
BstC8I	GCNNGC	1 cut(s)	806
BstDEI	CTNAG	2 cut(s)	15, 624
BstDSI	CCRYGG	1 cut(s)	156
BstEII	GGTNACC	1 cut(s)	604
BstF5I	GGATG	1 cut(s)	775
BstFNI	CGCG	2 cut(s)	152, 599
BstH2I	RGCGCY	1 cut(s)	662
BstHHI	GCGC	2 cut(s)	599, 661
BstKTI	GATC	4 cut(s)	146, 150, 436, 745
BstMAI	GTCTC	2 cut(s)	52, 207
BstMBI	GATC	4 cut(s)	143, 147, 433, 742
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 620, 656
BstNI	CCWGG	1 cut(s)	462
BstPI	GGTNACC	1 cut(s)	604
BstSCI	CCNGG	2 cut(s)	124, 460
BstSFI	CTRYAG	1 cut(s)	612
BstSLI	GKGCMC	1 cut(s)	480
BstUI	CGCG	2 cut(s)	152, 599
BstV1I	GCAGC	4 cut(s)	297, 718, 764, 795
Bsu15I	ATCGAT	1 cut(s)	146
BsuRI	GGCC	4 cut(s)	155, 357, 524, 698
BsuTUI	ATCGAT	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	156
BtgZI	GCGATG	2 cut(s)	20, 657
BtrI	CACGTC	1 cut(s)	475
BtsCI	GGATG	1 cut(s)	775
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	2 cut(s)	129, 498
Cac8I	GCNNGC	1 cut(s)	806
CciI	TCATGA	1 cut(s)	633
CfoI	GCGC	2 cut(s)	599, 661
Cfr13I	GGNCC	3 cut(s)	10, 119, 355
ClaI	ATCGAT	1 cut(s)	146
CseI	GACGC	3 cut(s)	355, 446, 656
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	2 cut(s)	157, 634
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	2 cut(s)	15, 624
DpnI	GATC	4 cut(s)	145, 149, 435, 744
DpnII	GATC	4 cut(s)	143, 147, 433, 742
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	4 cut(s)	221, 309, 632, 717
EarI	CTCTTC	4 cut(s)	221, 309, 632, 717
Ecl136II	GAGCTC	1 cut(s)	631
Eco130I	CCWWGG	2 cut(s)	156, 535
Eco24I	GRGCYC	2 cut(s)	633, 806
Eco47I	GGWCC	2 cut(s)	10, 119
Eco53kI	GAGCTC	1 cut(s)	631
Eco57I	CTGAAG	1 cut(s)	672
Eco91I	GGTNACC	1 cut(s)	604
EcoICRI	GAGCTC	1 cut(s)	631
EcoO65I	GGTNACC	1 cut(s)	604
EcoRII	CCWGG	1 cut(s)	460
EcoT14I	CCWWGG	2 cut(s)	156, 535
EcoT38I	GRGCYC	2 cut(s)	633, 806
ErhI	CCWWGG	2 cut(s)	156, 535
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	2 cut(s)	160, 637
FaiI	YATR	7 cut(s)	75, 158, 182, 184, 186, 635, 830
FatI	CATG	2 cut(s)	156, 633
FblI	GTMKAC	1 cut(s)	242
Fnu4HI	GCNGC	5 cut(s)	153, 286, 707, 753, 809
FokI	GGATG	1 cut(s)	782
FriOI	GRGCYC	2 cut(s)	633, 806
Fsp4HI	GCNGC	5 cut(s)	153, 286, 707, 753, 809
FspBI	CTAG	2 cut(s)	141, 201
GlaI	GCGC	2 cut(s)	598, 660
GluI	GCNGC	5 cut(s)	153, 286, 707, 753, 809
HaeII	RGCGCY	1 cut(s)	662
HaeIII	GGCC	4 cut(s)	155, 357, 524, 698
HapII	CCGG	1 cut(s)	126
HgaI	GACGC	3 cut(s)	355, 446, 656
HhaI	GCGC	2 cut(s)	599, 661
Hin1II	CATG	2 cut(s)	160, 637
Hin6I	GCGC	2 cut(s)	597, 659
HinP1I	GCGC	2 cut(s)	597, 659
HincII	GTYRAC	1 cut(s)	787
HindII	GTYRAC	1 cut(s)	787
HinfI	GANTC	3 cut(s)	215, 308, 510
HpaI	GTTAAC	1 cut(s)	787
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	3 cut(s)	407, 557, 616
Hpy166II	GTNNAC	4 cut(s)	243, 417, 478, 787
Hpy188I	TCNGA	2 cut(s)	220, 313
Hpy188III	TCNNGA	4 cut(s)	141, 305, 634, 746
Hpy8I	GTNNAC	4 cut(s)	243, 417, 478, 787
Hpy99I	CGWCG	2 cut(s)	794, 797
HpyAV	CCTTC	5 cut(s)	73, 82, 575, 659, 688
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	8 cut(s)	285, 449, 478, 498, 503, 614, 760, 811
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 620, 656
HpyF3I	CTNAG	2 cut(s)	15, 624
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	2 cut(s)	160, 637
HspAI	GCGC	2 cut(s)	597, 659
KspAI	GTTAAC	1 cut(s)	787
Kzo9I	GATC	4 cut(s)	143, 147, 433, 742
LguI	GCTCTTC	2 cut(s)	309, 632
LmnI	GCTCC	2 cut(s)	193, 628
LpnPI	CCDG	9 cut(s)	27, 34, 117, 139, 447, 459, 474, 624, 731
Lsp1109I	GCAGC	4 cut(s)	297, 718, 764, 795
MaeI	CTAG	2 cut(s)	141, 201
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	4 cut(s)	395, 545, 604, 728
MalI	GATC	4 cut(s)	145, 149, 435, 744
MboI	GATC	4 cut(s)	143, 147, 433, 742
MboII	GAAGA	5 cut(s)	161, 238, 326, 649, 734
MhlI	GDGCHC	3 cut(s)	480, 633, 806
MluCI	AATT	7 cut(s)	163, 221, 267, 341, 405, 576, 735
MlyI	GAGTC	1 cut(s)	209
MseI	TTAA	3 cut(s)	21, 738, 786
MslI	CAYNNNNRTG	1 cut(s)	183
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	126, 462
Mva1269I	GAATGC	1 cut(s)	811
MvaI	CCWGG	1 cut(s)	462
MvnI	CGCG	2 cut(s)	152, 599
MwoI	GCNNNNNNNGC	3 cut(s)	158, 620, 656
NciI	CCSGG	1 cut(s)	126
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	4 cut(s)	143, 147, 433, 742
NlaIII	CATG	2 cut(s)	160, 637
NlaIV	GGNNCC	1 cut(s)	12
NmeAIII	GCCGAG	1 cut(s)	724
NmuCI	GTSAC	3 cut(s)	395, 545, 604
NspV	TTCGAA	1 cut(s)	815
PagI	TCATGA	1 cut(s)	633
PciSI	GCTCTTC	2 cut(s)	309, 632
PcsI	WCGNNNNNNNCGW	1 cut(s)	812
PctI	GAATGC	1 cut(s)	811
PfeI	GAWTC	2 cut(s)	308, 510
PfoI	TCCNGGA	1 cut(s)	460
PkrI	GCNGC	5 cut(s)	154, 287, 708, 754, 810
Ple19I	CGATCG	1 cut(s)	150
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
Psp124BI	GAGCTC	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	460
PspEI	GGTNACC	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	3 cut(s)	10, 119, 355
PstI	CTGCAG	1 cut(s)	616
PvuI	CGATCG	1 cut(s)	150
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	183
SacI	GAGCTC	1 cut(s)	633
SapI	GCTCTTC	2 cut(s)	309, 632
SaqAI	TTAA	3 cut(s)	21, 738, 786
SatI	GCNGC	5 cut(s)	153, 286, 707, 753, 809
Sau3AI	GATC	4 cut(s)	143, 147, 433, 742
Sau96I	GGNCC	3 cut(s)	10, 119, 355
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	126, 462
SduI	GDGCHC	3 cut(s)	480, 633, 806
SfcI	CTRYAG	1 cut(s)	612
SfuI	TTCGAA	1 cut(s)	815
SinI	GGWCC	2 cut(s)	10, 119
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	7 cut(s)	163, 221, 267, 341, 405, 576, 735
SsiI	CCGC	2 cut(s)	152, 599
SspMI	CTAG	2 cut(s)	141, 201
SstI	GAGCTC	1 cut(s)	633
StyD4I	CCNGG	2 cut(s)	124, 460
StyI	CCWWGG	2 cut(s)	156, 535
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	7 cut(s)	146, 257, 297, 386, 527, 663, 815
TasI	AATT	7 cut(s)	163, 221, 267, 341, 405, 576, 735
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	2 cut(s)	308, 510
Tru1I	TTAA	3 cut(s)	21, 738, 786
Tru9I	TTAA	3 cut(s)	21, 738, 786
TscAI	CASTG	2 cut(s)	136, 505
TseFI	GTSAC	3 cut(s)	395, 545, 604
TseI	GCWGC	4 cut(s)	285, 706, 752, 808
Tsp45I	GTSAC	3 cut(s)	395, 545, 604
TspDTI	ATGAA	3 cut(s)	47, 161, 650
TspGWI	ACGGA	3 cut(s)	76, 225, 782
TspRI	CASTG	2 cut(s)	136, 505
VneI	GTGCAC	1 cut(s)	476
VpaK11BI	GGWCC	2 cut(s)	10, 119
XbaI	TCTAGA	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	242
XspI	CTAG	2 cut(s)	141, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.