Domain associated at C-terminal with AAA
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| AAA_assoc | PF14363 | 30 - 124 | 1.6e-23 | Domain associated at C-terminal with AAA |
| AAA | PF00004 | 230 - 359 | 1.6e-21 | ATPase family associated with various cellular activities (AAA) |
| AAA_lid_At3g28540 | PF25568 | 361 - 431 | 6.2e-23 | At3g28540-like, AAA+ ATPase lid domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 69, 1092 |
| AccI | GTMKAC | 1 cut(s) | 225 |
| AciI | CCGC | 4 cut(s) | 47, 67, 218, 1092 |
| AcsI | RAATTY | 1 cut(s) | 131 |
| AcuI | CTGAAG | 1 cut(s) | 1221 |
| AfaI | GTAC | 2 cut(s) | 467, 712 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 541, 713, 1092 |
| AflII | CTTAAG | 1 cut(s) | 602 |
| AflIII | ACRYGT | 2 cut(s) | 475, 1071 |
| AhlI | ACTAGT | 1 cut(s) | 782 |
| AjnI | CCWGG | 2 cut(s) | 280, 1045 |
| AleI | CACNNNNGTG | 1 cut(s) | 1187 |
| AluBI | AGCT | 7 cut(s) | 352, 424, 526, 601, 778, 975, 1216 |
| AluI | AGCT | 7 cut(s) | 352, 424, 526, 601, 778, 975, 1216 |
| Alw21I | GWGCWC | 3 cut(s) | 564, 1065, 1184 |
| Alw26I | GTCTC | 1 cut(s) | 266 |
| Alw44I | GTGCAC | 1 cut(s) | 1061 |
| Ama87I | CYCGRG | 5 cut(s) | 486, 557, 596, 937, 1087 |
| AoxI | GGCC | 2 cut(s) | 30, 447 |
| ApaLI | GTGCAC | 1 cut(s) | 1061 |
| ApeKI | GCWGC | 3 cut(s) | 215, 734, 1290 |
| ApoI | RAATTY | 1 cut(s) | 131 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 30 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 516 |
| AspLEI | GCGC | 1 cut(s) | 374 |
| AspS9I | GGNCC | 5 cut(s) | 64, 79, 447, 592, 701 |
| AsuC2I | CCSGG | 1 cut(s) | 708 |
| AsuHPI | GGTGA | 4 cut(s) | 466, 992, 994, 1201 |
| AvaI | CYCGRG | 5 cut(s) | 486, 557, 596, 937, 1087 |
| AvaII | GGWCC | 4 cut(s) | 64, 79, 592, 701 |
| BaeGI | GKGCMC | 1 cut(s) | 1065 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 173, 205 |
| BbsI | GAAGAC | 1 cut(s) | 384 |
| Bbv12I | GWGCWC | 3 cut(s) | 564, 1065, 1184 |
| BbvI | GCAGC | 3 cut(s) | 227, 746, 1302 |
| BccI | CCATC | 2 cut(s) | 335, 953 |
| BceAI | ACGGC | 1 cut(s) | 290 |
| BciT130I | CCWGG | 2 cut(s) | 282, 1047 |
| BcnI | CCSGG | 1 cut(s) | 708 |
| BcoDI | GTCTC | 1 cut(s) | 266 |
| BcuI | ACTAGT | 1 cut(s) | 782 |
| BfaI | CTAG | 2 cut(s) | 783, 1025 |
| BfrI | CTTAAG | 1 cut(s) | 602 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 44 |
| BglII | AGATCT | 1 cut(s) | 553 |
| BisI | GCNGC | 4 cut(s) | 48, 216, 735, 1291 |
| BlsI | GCNGC | 4 cut(s) | 49, 217, 736, 1292 |
| Bme1390I | CCNGG | 3 cut(s) | 282, 708, 1047 |
| Bme18I | GGWCC | 4 cut(s) | 64, 79, 592, 701 |
| BmeT110I | CYCGRG | 5 cut(s) | 486, 557, 596, 937, 1087 |
| BmgT120I | GGNCC | 5 cut(s) | 64, 79, 447, 592, 701 |
| BmiI | GGNNCC | 1 cut(s) | 594 |
| BmrFI | CCNGG | 3 cut(s) | 282, 708, 1047 |
| BmrI | ACTGGG | 1 cut(s) | 529 |
| BmsI | GCATC | 4 cut(s) | 421, 484, 1222, 1336 |
| BmuI | ACTGGG | 1 cut(s) | 529 |
| BpiI | GAAGAC | 1 cut(s) | 384 |
| Bpu10I | CCTNAGC | 1 cut(s) | 353 |
| BpuEI | CTTGAG | 2 cut(s) | 506, 737 |
| BpuMI | CCSGG | 1 cut(s) | 708 |
| Bsa29I | ATCGAT | 1 cut(s) | 330 |
| BsaJI | CCNNGG | 7 cut(s) | 9, 281, 450, 738, 870, 1120, 1185 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 541, 713, 1092 |
| Bse1I | ACTGG | 2 cut(s) | 535, 718 |
| Bse3DI | GCAATG | 1 cut(s) | 300 |
| BseBI | CCWGG | 2 cut(s) | 282, 1047 |
| BseCI | ATCGAT | 1 cut(s) | 330 |
| BseDI | CCNNGG | 7 cut(s) | 9, 281, 450, 738, 870, 1120, 1185 |
| BseGI | GGATG | 1 cut(s) | 1063 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 541, 713, 1092 |
| BseMI | GCAATG | 1 cut(s) | 300 |
| BseMII | CTCAG | 1 cut(s) | 813 |
| BseNI | ACTGG | 2 cut(s) | 535, 718 |
| BseRI | GAGGAG | 4 cut(s) | 655, 823, 911, 1226 |
| BseSI | GKGCMC | 1 cut(s) | 1065 |
| BseXI | GCAGC | 3 cut(s) | 227, 746, 1302 |
| BshFI | GGCC | 2 cut(s) | 32, 449 |
| BshVI | ATCGAT | 1 cut(s) | 330 |
| BsiHKAI | GWGCWC | 3 cut(s) | 564, 1065, 1184 |
| BsiHKCI | CYCGRG | 5 cut(s) | 486, 557, 596, 937, 1087 |
| BsiSI | CCGG | 1 cut(s) | 708 |
| BslFI | GGGAC | 2 cut(s) | 954, 1324 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 541, 713, 1092 |
| BsmAI | GTCTC | 1 cut(s) | 266 |
| BsmBI | CGTCTC | 1 cut(s) | 266 |
| BsmFI | GGGAC | 2 cut(s) | 954, 1324 |
| BsmI | GAATGC | 2 cut(s) | 50, 1125 |
| BsnI | GGCC | 2 cut(s) | 32, 449 |
| BsoBI | CYCGRG | 5 cut(s) | 486, 557, 596, 937, 1087 |
| Bsp1286I | GDGCHC | 3 cut(s) | 564, 1065, 1184 |
| Bsp143I | GATC | 4 cut(s) | 104, 120, 149, 553 |
| Bsp19I | CCATGG | 1 cut(s) | 738 |
| BspACI | CCGC | 4 cut(s) | 47, 67, 218, 1092 |
| BspANI | GGCC | 2 cut(s) | 32, 449 |
| BspCNI | CTCAG | 1 cut(s) | 812 |
| BspDI | ATCGAT | 1 cut(s) | 330 |
| BspHI | TCATGA | 1 cut(s) | 94 |
| BspLI | GGNNCC | 1 cut(s) | 594 |
| BspTI | CTTAAG | 1 cut(s) | 602 |
| BsrBI | CCGCTC | 2 cut(s) | 69, 1092 |
| BsrDI | GCAATG | 1 cut(s) | 300 |
| BsrI | ACTGG | 2 cut(s) | 535, 718 |
| BssECI | CCNNGG | 7 cut(s) | 9, 281, 450, 738, 870, 1120, 1185 |
| BssMI | GATC | 4 cut(s) | 104, 120, 149, 553 |
| BssT1I | CCWWGG | 3 cut(s) | 450, 738, 1120 |
| Bst2UI | CCWGG | 2 cut(s) | 282, 1047 |
| Bst4CI | ACNGT | 1 cut(s) | 871 |
| Bst6I | CTCTTC | 2 cut(s) | 92, 1217 |
| BstAFI | CTTAAG | 1 cut(s) | 602 |
| BstC8I | GCNNGC | 1 cut(s) | 426 |
| BstDEI | CTNAG | 3 cut(s) | 353, 799, 1105 |
| BstDSI | CCRYGG | 2 cut(s) | 738, 870 |
| BstEII | GGTNACC | 1 cut(s) | 1189 |
| BstF5I | GGATG | 1 cut(s) | 1063 |
| BstHHI | GCGC | 1 cut(s) | 374 |
| BstKTI | GATC | 4 cut(s) | 107, 123, 152, 556 |
| BstMAI | GTCTC | 1 cut(s) | 266 |
| BstMBI | GATC | 4 cut(s) | 104, 120, 149, 553 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 44, 740, 1089, 1205, 1241 |
| BstNI | CCWGG | 2 cut(s) | 282, 1047 |
| BstNSI | RCATGY | 3 cut(s) | 472, 479, 1075 |
| BstPI | GGTNACC | 1 cut(s) | 1189 |
| BstSCI | CCNGG | 3 cut(s) | 280, 706, 1045 |
| BstSLI | GKGCMC | 1 cut(s) | 1065 |
| BstV1I | GCAGC | 3 cut(s) | 227, 746, 1302 |
| BstV2I | GAAGAC | 1 cut(s) | 384 |
| BstX2I | RGATCY | 1 cut(s) | 553 |
| BstYI | RGATCY | 1 cut(s) | 553 |
| Bsu15I | ATCGAT | 1 cut(s) | 330 |
| BsuRI | GGCC | 2 cut(s) | 32, 449 |
| BsuTUI | ATCGAT | 1 cut(s) | 330 |
| BtgI | CCRYGG | 2 cut(s) | 738, 870 |
| BtgZI | GCGATG | 1 cut(s) | 1130 |
| BtsCI | GGATG | 1 cut(s) | 1063 |
| Cac8I | GCNNGC | 1 cut(s) | 426 |
| CciI | TCATGA | 1 cut(s) | 94 |
| CfoI | GCGC | 1 cut(s) | 374 |
| Cfr13I | GGNCC | 5 cut(s) | 64, 79, 447, 592, 701 |
| ClaI | ATCGAT | 1 cut(s) | 330 |
| CseI | GACGC | 2 cut(s) | 248, 1031 |
| Csp6I | GTAC | 2 cut(s) | 466, 711 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 370, 405 |
| CviAII | CATG | 6 cut(s) | 95, 160, 469, 476, 739, 1072 |
| CviQI | GTAC | 2 cut(s) | 466, 711 |
| DdeI | CTNAG | 3 cut(s) | 353, 799, 1105 |
| DpnI | GATC | 4 cut(s) | 106, 122, 151, 555 |
| DpnII | GATC | 4 cut(s) | 104, 120, 149, 553 |
| Eam1104I | CTCTTC | 2 cut(s) | 92, 1217 |
| EarI | CTCTTC | 2 cut(s) | 92, 1217 |
| Eco130I | CCWWGG | 3 cut(s) | 450, 738, 1120 |
| Eco47I | GGWCC | 4 cut(s) | 64, 79, 592, 701 |
| Eco57I | CTGAAG | 1 cut(s) | 1221 |
| Eco88I | CYCGRG | 5 cut(s) | 486, 557, 596, 937, 1087 |
| Eco91I | GGTNACC | 1 cut(s) | 1189 |
| EcoO65I | GGTNACC | 1 cut(s) | 1189 |
| EcoRII | CCWGG | 2 cut(s) | 280, 1045 |
| EcoT14I | CCWWGG | 3 cut(s) | 450, 738, 1120 |
| ErhI | CCWWGG | 3 cut(s) | 450, 738, 1120 |
| Esp3I | CGTCTC | 1 cut(s) | 266 |
| FaeI | CATG | 6 cut(s) | 98, 163, 472, 479, 742, 1075 |
| FaqI | GGGAC | 2 cut(s) | 954, 1324 |
| FatI | CATG | 6 cut(s) | 94, 159, 468, 475, 738, 1071 |
| FauI | CCCGC | 1 cut(s) | 1085 |
| FblI | GTMKAC | 1 cut(s) | 225 |
| Fnu4HI | GCNGC | 4 cut(s) | 48, 216, 735, 1291 |
| FokI | GGATG | 1 cut(s) | 1070 |
| Fsp4HI | GCNGC | 4 cut(s) | 48, 216, 735, 1291 |
| FspBI | CTAG | 2 cut(s) | 783, 1025 |
| GlaI | GCGC | 1 cut(s) | 373 |
| GluI | GCNGC | 4 cut(s) | 48, 216, 735, 1291 |
| HaeIII | GGCC | 2 cut(s) | 32, 449 |
| HapII | CCGG | 1 cut(s) | 708 |
| HgaI | GACGC | 2 cut(s) | 248, 1031 |
| HhaI | GCGC | 1 cut(s) | 374 |
| Hin1II | CATG | 6 cut(s) | 98, 163, 472, 479, 742, 1075 |
| Hin6I | GCGC | 1 cut(s) | 372 |
| HinP1I | GCGC | 1 cut(s) | 372 |
| HincII | GTYRAC | 1 cut(s) | 310 |
| HindII | GTYRAC | 1 cut(s) | 310 |
| HindIII | AAGCTT | 2 cut(s) | 350, 524 |
| HinfI | GANTC | 5 cut(s) | 292, 461, 530, 890, 1101 |
| HpaII | CCGG | 1 cut(s) | 708 |
| HphI | GGTGA | 4 cut(s) | 466, 992, 994, 1201 |
| Hpy166II | GTNNAC | 6 cut(s) | 226, 310, 704, 874, 1002, 1063 |
| Hpy188I | TCNGA | 6 cut(s) | 233, 266, 802, 895, 1100, 1285 |
| Hpy188III | TCNNGA | 4 cut(s) | 95, 557, 939, 1247 |
| Hpy8I | GTNNAC | 6 cut(s) | 226, 310, 704, 874, 1002, 1063 |
| HpyAV | CCTTC | 3 cut(s) | 576, 1160, 1244 |
| HpyCH4III | ACNGT | 1 cut(s) | 871 |
| HpyCH4V | TGCA | 9 cut(s) | 472, 497, 734, 867, 1034, 1063, 1083, 1208, 1349 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 44, 740, 1089, 1205, 1241 |
| HpyF3I | CTNAG | 3 cut(s) | 353, 799, 1105 |
| Hsp92II | CATG | 6 cut(s) | 98, 163, 472, 479, 742, 1075 |
| HspAI | GCGC | 1 cut(s) | 372 |
| Kzo9I | GATC | 4 cut(s) | 104, 120, 149, 553 |
| LmnI | GCTCC | 3 cut(s) | 74, 775, 1213 |
| Lsp1109I | GCAGC | 3 cut(s) | 227, 746, 1302 |
| LweI | GCATC | 4 cut(s) | 421, 484, 1222, 1336 |
| MaeI | CTAG | 2 cut(s) | 783, 1025 |
| MaeIII | GTNAC | 3 cut(s) | 188, 980, 1189 |
| MalI | GATC | 4 cut(s) | 106, 122, 151, 555 |
| MbiI | CCGCTC | 2 cut(s) | 69, 1092 |
| MboI | GATC | 4 cut(s) | 104, 120, 149, 553 |
| MboII | GAAGA | 7 cut(s) | 79, 115, 127, 389, 673, 1234, 1343 |
| MflI | RGATCY | 1 cut(s) | 553 |
| MhlI | GDGCHC | 3 cut(s) | 564, 1065, 1184 |
| MluCI | AATT | 7 cut(s) | 131, 498, 612, 745, 803, 990, 1161 |
| MlyI | GAGTC | 3 cut(s) | 286, 455, 1110 |
| MroXI | GAANNNNTTC | 1 cut(s) | 516 |
| MseI | TTAA | 4 cut(s) | 348, 603, 929, 1172 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1070, 1187 |
| MspA1I | CMGCKG | 1 cut(s) | 218 |
| MspCI | CTTAAG | 1 cut(s) | 602 |
| MspI | CCGG | 1 cut(s) | 708 |
| MspR9I | CCNGG | 3 cut(s) | 282, 708, 1047 |
| Mva1269I | GAATGC | 2 cut(s) | 50, 1125 |
| MvaI | CCWGG | 2 cut(s) | 282, 1047 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 44, 740, 1089, 1205, 1241 |
| NciI | CCSGG | 1 cut(s) | 708 |
| NcoI | CCATGG | 1 cut(s) | 738 |
| NdeII | GATC | 4 cut(s) | 104, 120, 149, 553 |
| NlaIII | CATG | 6 cut(s) | 98, 163, 472, 479, 742, 1075 |
| NlaIV | GGNNCC | 1 cut(s) | 594 |
| NmuCI | GTSAC | 2 cut(s) | 980, 1189 |
| NspI | RCATGY | 3 cut(s) | 472, 479, 1075 |
| OliI | CACNNNNGTG | 1 cut(s) | 1187 |
| PaeR7I | CTCGAG | 2 cut(s) | 486, 557 |
| PagI | TCATGA | 1 cut(s) | 94 |
| PciI | ACATGT | 2 cut(s) | 475, 1071 |
| PctI | GAATGC | 2 cut(s) | 50, 1125 |
| PdmI | GAANNNNTTC | 1 cut(s) | 516 |
| PfeI | GAWTC | 2 cut(s) | 530, 890 |
| PkrI | GCNGC | 4 cut(s) | 49, 217, 736, 1292 |
| PleI | GAGTC | 3 cut(s) | 286, 455, 1109 |
| PpsI | GAGTC | 3 cut(s) | 286, 455, 1109 |
| PscI | ACATGT | 2 cut(s) | 475, 1071 |
| Psp6I | CCWGG | 2 cut(s) | 280, 1045 |
| PspEI | GGTNACC | 1 cut(s) | 1189 |
| PspGI | CCWGG | 2 cut(s) | 280, 1045 |
| PspN4I | GGNNCC | 1 cut(s) | 594 |
| PspPI | GGNCC | 5 cut(s) | 64, 79, 447, 592, 701 |
| PspXI | VCTCGAGB | 1 cut(s) | 486 |
| PsuI | RGATCY | 1 cut(s) | 553 |
| RsaI | GTAC | 2 cut(s) | 467, 712 |
| RsaNI | GTAC | 2 cut(s) | 466, 711 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1070, 1187 |
| SaqAI | TTAA | 4 cut(s) | 348, 603, 929, 1172 |
| SatI | GCNGC | 4 cut(s) | 48, 216, 735, 1291 |
| Sau3AI | GATC | 4 cut(s) | 104, 120, 149, 553 |
| Sau96I | GGNCC | 5 cut(s) | 64, 79, 447, 592, 701 |
| SchI | GAGTC | 3 cut(s) | 286, 455, 1110 |
| ScrFI | CCNGG | 3 cut(s) | 282, 708, 1047 |
| SduI | GDGCHC | 3 cut(s) | 564, 1065, 1184 |
| SfaNI | GCATC | 4 cut(s) | 421, 484, 1222, 1336 |
| Sfr274I | CTCGAG | 2 cut(s) | 486, 557 |
| SinI | GGWCC | 4 cut(s) | 64, 79, 592, 701 |
| SlaI | CTCGAG | 2 cut(s) | 486, 557 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1070, 1187 |
| SmlI | CTYRAG | 5 cut(s) | 486, 521, 557, 602, 752 |
| SmoI | CTYRAG | 5 cut(s) | 486, 521, 557, 602, 752 |
| SpeI | ACTAGT | 1 cut(s) | 782 |
| Sse9I | AATT | 7 cut(s) | 131, 498, 612, 745, 803, 990, 1161 |
| SsiI | CCGC | 4 cut(s) | 47, 67, 218, 1092 |
| SspMI | CTAG | 2 cut(s) | 783, 1025 |
| StyD4I | CCNGG | 3 cut(s) | 280, 706, 1045 |
| StyI | CCWWGG | 3 cut(s) | 450, 738, 1120 |
| TaaI | ACNGT | 1 cut(s) | 871 |
| TaqI | TCGA | 8 cut(s) | 119, 148, 330, 487, 558, 618, 971, 1051 |
| TasI | AATT | 7 cut(s) | 131, 498, 612, 745, 803, 990, 1161 |
| TauI | GCSGC | 1 cut(s) | 50 |
| TfiI | GAWTC | 2 cut(s) | 530, 890 |
| Tru1I | TTAA | 4 cut(s) | 348, 603, 929, 1172 |
| Tru9I | TTAA | 4 cut(s) | 348, 603, 929, 1172 |
| TseFI | GTSAC | 2 cut(s) | 980, 1189 |
| TseI | GCWGC | 3 cut(s) | 215, 734, 1290 |
| Tsp45I | GTSAC | 2 cut(s) | 980, 1189 |
| TspDTI | ATGAA | 5 cut(s) | 43, 225, 924, 1118, 1235 |
| Vha464I | CTTAAG | 1 cut(s) | 602 |
| VneI | GTGCAC | 1 cut(s) | 1061 |
| VpaK11BI | GGWCC | 4 cut(s) | 64, 79, 592, 701 |
| XapI | RAATTY | 1 cut(s) | 131 |
| XceI | RCATGY | 3 cut(s) | 472, 479, 1075 |
| XhoI | CTCGAG | 2 cut(s) | 486, 557 |
| XmiI | GTMKAC | 1 cut(s) | 225 |
| XmnI | GAANNNNTTC | 1 cut(s) | 516 |
| XspI | CTAG | 2 cut(s) | 783, 1025 |