Rh2BG135600

Domain associated at C-terminal with AAA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000471
Physical Location & Seq
Reverse (-)
11581030 .. 11582569
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG135600.1

Sequence Viewer

Length: 1017 bp
ATGCAAACCACAGCATCCACATTGTTCTCAGCCTATGCCTCCTTTGCTGCATCAATGATGTTGGTCCGCTCCATTACAGACCAACTCATTCCCCACCAGTTTCGCTCATACATATACTCAGTCTTCAGTCACTTTTTTACCACTCCCTCCTCGAACCTCACTTTGATTGTTGAAGAGTGCTGTGGTATGACACGAAACCAAGTCTATGATGCTGCGGAAGTTTACCTCCAAACAAAGATCAATCCTTTCACTGAACGCCTCAAGATCAGCAAAACACCCAGGAAAAAGAACATTAGCATTGCCATGGACAAAGGCGAAGAAATCACCGACACCTTTGACAATGATATCAAATTGAAGTGGCGCTTCACCGAGCCTGAGAAAAAACAGAAGGACGAGTACCACTCTGCTAATGACAGTAGGCGTCGGTTTGAGCTAGTGTTTGACAAGAAACACAAGGACACGGTGATGGACTCTTACTTGCCCTACGTTTTTGCTCGAGCTAAAGCCATTCAAGAAGAGGAAAAGGTTGTTAGGCTTTACACCCGGGGTTCGAGTCTGGGTGATGATGAGAACGATAACAGGGGTTCAAGTGGTTGGGGTTCCATAAGGATGGAGCATCCATCTAATTTTGGAACAATGGCGATGGATCCAGAGCTTGAAAGAATGGTTATTGATGATTTGGATAGGTTTGTGAGGAGGAGGGAGTTTTACAAAAGGGTTGGATTCGACATCTTAGCCTCCAACTACCTAGGCATTCATGAAAGCAACCCTCATTACCTCTGCAAAGAAGTTAAAGGGCTGATAGAGAGCACTGAGGTCACCCCTGCAGAGGTTGCTGAGGAGCTCATGAAAAGTGATGATGCTAATGGTACTCTCAAAGGGCTTGTCAATTTCCTCAAGAAAAAGGAGGTCGAGAATGATAAAGTGAAGGTAGAAGGGGCTGACAAAACTGAAGATCAAGAGCCATTTCCGGATGACTATTTACCACTCTATGATGGCTTTGACTTATTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

338

Amino Acids

39.07

Weight (kDa)

5.24

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 30 - 123 6.9e-25 Domain associated at C-terminal with AAA
AAA_lid_At3g28540 PF25568 241 - 306 1.6e-18 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18190 AT2G18193
fragaria_vesca FvH4_1g12130 FvH4_1g12690 FvH4_1g12700 FvH4_1g12712 FvH4_1g12716 FvH4_1g12731
malus_domestica MD02G1141300.v1.1 MD02G1141400.v1.1 MD02G1141600.v1.1 MD02G1141800.v1.1 MD02G1142200.v1.1 MD15G1254200.v1.1
prunus_persica Prupe.7G159500_v2.0.a1 Prupe.7G159600_v2.0.a1 Prupe.7G165500_v2.0.a1
pyrus_communis pycom02g11130 pycom02g11150 pycom02g11160 pycom02g11180 pycom15g22350
rosa_chinensis RchiOBHm_Chr2g0099791 RchiOBHm_Chr2g0099801 RchiOBHm_Chr2g0100651 RchiOBHm_Chr2g0100681 RchiOBHm_Chr2g0100691 RchiOBHm_Chr2g0100701 RchiOBHm_Chr2g0100721 RchiOBHm_Chr2g0100801 RchiOBHm_Chr3g0459141
rosa_laevigata RLG00000016914 RLG00000016915 RLG00000016997 RLG00000016998 RLG00000017000 RLG00000017002 RLG00000017012 RLG00000025114
rosa_multiflora Rmu_co8416275.1_g000001 Rmu_sc0001187.1_g000004 Rmu_sc0001497.1_g000006 Rmu_sc0001659.1_g000004 Rmu_sc0001659.1_g000006 Rmu_sc0001659.1_g000008 Rmu_sc0001659.1_g000010 Rmu_sc0008864.1_g000008 Rmu_sc0028022.1_g000001
rosa_roxburghii Rroxscaffold_2G00141850 Rroxscaffold_2G00141930 Rroxscaffold_2G00141940 Rroxscaffold_2G00141950 Rroxscaffold_2G00141960 Rroxscaffold_2G00141970
rosa_rugosa Rorug02G0091800 Rorug02G0091800 Rorug02G0091800 Rorug02G0091900 Rorug02G0092900 Rorug03G0033500
rosa_samantha Rh2BG135600 Rh2BG143900 Rh2BG144000 Rh2BG144200 Rh2BG144300 Rh2BG144400 Rh2BG144500 Rh2BG145500 Rh2CG136900 Rh2CG137000 Rh2CG144800 Rh2CG145000 Rh2CG145100 Rh2CG145200 Rh2CG145500 Rh2CG146400 Rh2DG137400 Rh2DG137500 Rh2DG144300 Rh2DG144500 Rh2DG144600 Rh2DG144700 Rh2DG145000 Rh2DG145900 Rh3BG094700 Rh3DG095300
rosa_wichuraiana Rw2G010920 Rw2G010950 Rw2G010990 Rw3G007860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 69
AccIII TCCGGA 1 cut(s) 970
AciI CCGC 2 cut(s) 67, 215
AclWI GGATC 2 cut(s) 641, 654
AcuI CTGAAG 2 cut(s) 109, 972
AcyI GRCGYC 1 cut(s) 421
AfaI GTAC 2 cut(s) 398, 871
AfiI CCNNNNNNNGG 1 cut(s) 829
AgsI TTSAA 5 cut(s) 173, 355, 512, 588, 659
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 4 cut(s) 433, 500, 655, 844
AluI AGCT 4 cut(s) 433, 500, 655, 844
Alw21I GWGCWC 2 cut(s) 812, 846
AlwI GGATC 2 cut(s) 641, 654
Ama87I CYCGRG 2 cut(s) 495, 543
Aor13HI TCCGGA 1 cut(s) 970
ApeKI GCWGC 2 cut(s) 47, 212
ArsI GACNNNNNNTTYG 2 cut(s) 870, 902
AspA2I CCTAGG 1 cut(s) 748
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 1 cut(s) 64
AsuC2I CCSGG 2 cut(s) 544, 545
AsuHPI GGTGA 5 cut(s) 316, 358, 475, 572, 811
AvaI CYCGRG 2 cut(s) 495, 543
AvaII GGWCC 1 cut(s) 64
AvrII CCTAGG 1 cut(s) 748
BamHI GGATCC 1 cut(s) 646
BanII GRGCYC 1 cut(s) 846
BarI GAAGNNNNNNTAC 2 cut(s) 380, 412
BbsI GAAGAC 1 cut(s) 115
Bbv12I GWGCWC 2 cut(s) 812, 846
BbvCI CCTCAGC 1 cut(s) 837
BbvI GCAGC 2 cut(s) 34, 199
BccI CCATC 5 cut(s) 460, 604, 628, 637, 989
BciT130I CCWGG 1 cut(s) 280
BcnI CCSGG 2 cut(s) 544, 545
BfaI CTAG 2 cut(s) 434, 749
BfmI CTRYAG 1 cut(s) 825
BfoI RGCGCY 1 cut(s) 364
BisI GCNGC 2 cut(s) 48, 213
BlnI CCTAGG 1 cut(s) 748
BlsI GCNGC 2 cut(s) 49, 214
Bme1390I CCNGG 3 cut(s) 280, 544, 545
Bme18I GGWCC 1 cut(s) 64
BmeT110I CYCGRG 2 cut(s) 495, 543
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 2 cut(s) 601, 648
BmrFI CCNGG 3 cut(s) 280, 544, 545
BmsI GCATC 5 cut(s) 23, 59, 199, 625, 850
BpiI GAAGAC 1 cut(s) 115
BplI GAGNNNNNCTC 2 cut(s) 386, 418
Bpu10I CCTNAGC 1 cut(s) 837
BpuEI CTTGAG 2 cut(s) 245, 881
BpuMI CCSGG 2 cut(s) 544, 545
BsaHI GRCGYC 1 cut(s) 421
BsaJI CCNNGG 5 cut(s) 278, 303, 543, 544, 748
BsaWI WCCGGW 1 cut(s) 970
Bsc4I CCNNNNNNNGG 1 cut(s) 829
Bse1I ACTGG 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 297
BseAI TCCGGA 1 cut(s) 970
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 5 cut(s) 278, 303, 543, 544, 748
BseGI GGATG 4 cut(s) 14, 615, 616, 979
BseLI CCNNNNNNNGG 1 cut(s) 829
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 5 cut(s) 42, 132, 366, 804, 828
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 4 cut(s) 139, 709, 712, 854
BseXI GCAGC 2 cut(s) 34, 199
BsiHKAI GWGCWC 2 cut(s) 812, 846
BsiHKCI CYCGRG 2 cut(s) 495, 543
BsiSI CCGG 2 cut(s) 544, 971
BslI CCNNNNNNNGG 1 cut(s) 829
BsmI GAATGC 1 cut(s) 753
BsoBI CYCGRG 2 cut(s) 495, 543
Bsp1286I GDGCHC 2 cut(s) 812, 846
Bsp13I TCCGGA 1 cut(s) 970
Bsp143I GATC 4 cut(s) 237, 264, 646, 955
Bsp19I CCATGG 1 cut(s) 303
BspACI CCGC 2 cut(s) 67, 215
BspCNI CTCAG 5 cut(s) 41, 131, 367, 805, 829
BspEI TCCGGA 1 cut(s) 970
BspHI TCATGA 2 cut(s) 757, 846
BspLI GGNNCC 2 cut(s) 601, 648
BspMAI CTGCAG 1 cut(s) 829
BspPI GGATC 2 cut(s) 641, 654
BsrBI CCGCTC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 297
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 5 cut(s) 278, 303, 543, 544, 748
BssMI GATC 4 cut(s) 237, 264, 646, 955
BssNI GRCGYC 1 cut(s) 421
BssT1I CCWWGG 2 cut(s) 303, 748
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 2 cut(s) 416, 463
Bst6I CTCTTC 2 cut(s) 168, 510
BstACI GRCGYC 1 cut(s) 421
BstAPI GCANNNNNTGC 1 cut(s) 833
BstDEI CTNAG 6 cut(s) 28, 118, 375, 733, 813, 837
BstDSI CCRYGG 1 cut(s) 303
BstEII GGTNACC 1 cut(s) 817
BstF5I GGATG 4 cut(s) 14, 615, 616, 979
BstH2I RGCGCY 1 cut(s) 364
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 4 cut(s) 240, 267, 649, 958
BstMBI GATC 4 cut(s) 237, 264, 646, 955
BstMWI GCNNNNNNNGC 2 cut(s) 44, 833
BstNI CCWGG 1 cut(s) 280
BstPI GGTNACC 1 cut(s) 817
BstSCI CCNGG 3 cut(s) 278, 542, 543
BstSFI CTRYAG 1 cut(s) 825
BstV1I GCAGC 2 cut(s) 34, 199
BstV2I GAAGAC 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 646
BstXI CCANNNNNNTGG 1 cut(s) 610
BstYI RGATCY 1 cut(s) 646
BtgI CCRYGG 1 cut(s) 303
BtgZI GCGATG 1 cut(s) 656
BtsCI GGATG 4 cut(s) 14, 615, 616, 979
BtsIMutI CAGTG 2 cut(s) 249, 810
CciI TCATGA 2 cut(s) 757, 846
CfoI GCGC 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 64
Cfr9I CCCGGG 1 cut(s) 543
CseI GACGC 1 cut(s) 410
Csp6I GTAC 2 cut(s) 397, 870
CviAII CATG 3 cut(s) 304, 758, 847
CviQI GTAC 2 cut(s) 397, 870
DdeI CTNAG 6 cut(s) 28, 118, 375, 733, 813, 837
DpnI GATC 4 cut(s) 239, 266, 648, 957
DpnII GATC 4 cut(s) 237, 264, 646, 955
Eam1104I CTCTTC 2 cut(s) 168, 510
EarI CTCTTC 2 cut(s) 168, 510
Ecl136II GAGCTC 1 cut(s) 844
Eco130I CCWWGG 2 cut(s) 303, 748
Eco24I GRGCYC 1 cut(s) 846
Eco32I GATATC 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 844
Eco57I CTGAAG 2 cut(s) 109, 972
Eco88I CYCGRG 2 cut(s) 495, 543
Eco91I GGTNACC 1 cut(s) 817
EcoICRI GAGCTC 1 cut(s) 844
EcoO65I GGTNACC 1 cut(s) 817
EcoRII CCWGG 1 cut(s) 278
EcoRV GATATC 1 cut(s) 346
EcoT14I CCWWGG 2 cut(s) 303, 748
EcoT38I GRGCYC 1 cut(s) 846
ErhI CCWWGG 2 cut(s) 303, 748
FaeI CATG 3 cut(s) 307, 761, 850
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FatI CATG 3 cut(s) 303, 757, 846
Fnu4HI GCNGC 2 cut(s) 48, 213
FokI GGATG 3 cut(s) 603, 622, 986
FriOI GRGCYC 1 cut(s) 846
Fsp4HI GCNGC 2 cut(s) 48, 213
FspBI CTAG 2 cut(s) 434, 749
GlaI GCGC 1 cut(s) 362
GluI GCNGC 2 cut(s) 48, 213
HaeII RGCGCY 1 cut(s) 364
HapII CCGG 2 cut(s) 544, 971
HgaI GACGC 1 cut(s) 410
HhaI GCGC 1 cut(s) 363
Hin1I GRCGYC 1 cut(s) 421
Hin1II CATG 3 cut(s) 307, 761, 850
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HinfI GANTC 3 cut(s) 470, 553, 723
HpaII CCGG 2 cut(s) 544, 971
HphI GGTGA 5 cut(s) 316, 358, 475, 572, 811
Hpy166II GTNNAC 1 cut(s) 223
Hpy188III TCNNGA 9 cut(s) 262, 512, 650, 758, 847, 898, 913, 959, 971
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 1 cut(s) 426
HpyAV CCTTC 3 cut(s) 382, 922, 929
HpyCH4III ACNGT 2 cut(s) 416, 463
HpyCH4IV ACGT 1 cut(s) 486
HpyCH4V TGCA 4 cut(s) 4, 50, 783, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 833
HpyF3I CTNAG 6 cut(s) 28, 118, 375, 733, 813, 837
HpySE526I ACGT 1 cut(s) 486
Hsp92I GRCGYC 1 cut(s) 421
Hsp92II CATG 3 cut(s) 307, 761, 850
HspAI GCGC 1 cut(s) 361
Kpn2I TCCGGA 1 cut(s) 970
Kzo9I GATC 4 cut(s) 237, 264, 646, 955
LmnI GCTCC 3 cut(s) 74, 613, 841
Lsp1109I GCAGC 2 cut(s) 34, 199
LweI GCATC 5 cut(s) 23, 59, 199, 625, 850
MaeI CTAG 2 cut(s) 434, 749
MaeII ACGT 1 cut(s) 486
MaeIII GTNAC 2 cut(s) 128, 817
MalI GATC 4 cut(s) 239, 266, 648, 957
MbiI CCGCTC 1 cut(s) 69
MboI GATC 4 cut(s) 237, 264, 646, 955
MboII GAAGA 5 cut(s) 115, 185, 329, 527, 965
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 2 cut(s) 812, 846
MluCI AATT 3 cut(s) 350, 625, 889
MlyI GAGTC 2 cut(s) 464, 562
MmeI TCCRAC 2 cut(s) 700, 765
MroI TCCGGA 1 cut(s) 970
MseI TTAA 1 cut(s) 792
MslI CAYNNNNRTG 3 cut(s) 302, 464, 608
MspI CCGG 2 cut(s) 544, 971
MspR9I CCNGG 3 cut(s) 280, 544, 545
Mva1269I GAATGC 1 cut(s) 753
MvaI CCWGG 1 cut(s) 280
MwoI GCNNNNNNNGC 2 cut(s) 44, 833
NciI CCSGG 2 cut(s) 544, 545
NcoI CCATGG 1 cut(s) 303
NdeII GATC 4 cut(s) 237, 264, 646, 955
NlaIII CATG 3 cut(s) 307, 761, 850
NlaIV GGNNCC 2 cut(s) 601, 648
NmuCI GTSAC 2 cut(s) 128, 817
PaeR7I CTCGAG 1 cut(s) 495
PagI TCATGA 2 cut(s) 757, 846
PctI GAATGC 1 cut(s) 753
PfeI GAWTC 1 cut(s) 723
PkrI GCNGC 2 cut(s) 49, 214
PleI GAGTC 2 cut(s) 464, 561
PpsI GAGTC 2 cut(s) 464, 561
Psp124BI GAGCTC 1 cut(s) 846
Psp6I CCWGG 1 cut(s) 278
PspEI GGTNACC 1 cut(s) 817
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 2 cut(s) 601, 648
PspPI GGNCC 1 cut(s) 64
PspXI VCTCGAGB 1 cut(s) 495
PstI CTGCAG 1 cut(s) 829
PsuI RGATCY 1 cut(s) 646
RsaI GTAC 2 cut(s) 398, 871
RsaNI GTAC 2 cut(s) 397, 870
RseI CAYNNNNRTG 3 cut(s) 302, 464, 608
SacI GAGCTC 1 cut(s) 846
SaqAI TTAA 1 cut(s) 792
SatI GCNGC 2 cut(s) 48, 213
Sau3AI GATC 4 cut(s) 237, 264, 646, 955
Sau96I GGNCC 1 cut(s) 64
SchI GAGTC 2 cut(s) 464, 562
ScrFI CCNGG 3 cut(s) 280, 544, 545
SduI GDGCHC 2 cut(s) 812, 846
SfaNI GCATC 5 cut(s) 23, 59, 199, 625, 850
SfcI CTRYAG 1 cut(s) 825
Sfr274I CTCGAG 1 cut(s) 495
SinI GGWCC 1 cut(s) 64
SlaI CTCGAG 1 cut(s) 495
SmaI CCCGGG 1 cut(s) 545
SmiMI CAYNNNNRTG 3 cut(s) 302, 464, 608
SmlI CTYRAG 3 cut(s) 260, 495, 896
SmoI CTYRAG 3 cut(s) 260, 495, 896
Sse9I AATT 3 cut(s) 350, 625, 889
SsiI CCGC 2 cut(s) 67, 215
SspMI CTAG 2 cut(s) 434, 749
SstI GAGCTC 1 cut(s) 846
StyD4I CCNGG 3 cut(s) 278, 542, 543
StyI CCWWGG 2 cut(s) 303, 748
TaaI ACNGT 2 cut(s) 416, 463
TaiI ACGT 1 cut(s) 489
TaqI TCGA 5 cut(s) 152, 496, 551, 726, 912
TasI AATT 3 cut(s) 350, 625, 889
TfiI GAWTC 1 cut(s) 723
Tru1I TTAA 1 cut(s) 792
Tru9I TTAA 1 cut(s) 792
TscAI CASTG 2 cut(s) 256, 817
TseFI GTSAC 2 cut(s) 128, 817
TseI GCWGC 2 cut(s) 47, 212
Tsp45I GTSAC 2 cut(s) 128, 817
TspDTI ATGAA 3 cut(s) 746, 774, 863
TspMI CCCGGG 1 cut(s) 543
TspRI CASTG 2 cut(s) 256, 817
VpaK11BI GGWCC 1 cut(s) 64
XhoI CTCGAG 1 cut(s) 495
XmaI CCCGGG 1 cut(s) 543
XmaJI CCTAGG 1 cut(s) 748
XspI CTAG 2 cut(s) 434, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.