Rh3BG094700

Domain associated at C-terminal with AAA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000471
Physical Location & Seq
Reverse (-)
7541475 .. 7548058
6584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG094700.1

Sequence Viewer

Length: 669 bp
ATGGGTTGCACACTCACCGTCGTCCGGAGCGAAACCCAGCTGCAGTTGTCCGGATCGAAATCCAAACAGGGGCAGTCCGGATCGAAACCCAGCCGCCTCCATCAGGAACGAAACGAGAACCCAGTCGCCGCCGTCGATCTGAACCGTTTCAAAGACATGCCCACCTCGGCTTCGTCCTTGTTTTCGGCCTATGCCTCATTGGCGGCATTCATCATGTTGGTCCGCTCCATAATGGACCAACTCTTGCCTCATGAGTTGCGCTCATACATTTTCTCGATCTTCAACAAATTCTTCTACACCCCTCGATCTTTGGACATGACAATCATTATTGATGAGAAGTGTGGCTACATCAGCAATCAAGTTTATGAAGCAGCGGAAGTCTACATCCGAACCAAGATTAGTGATTTGAATGAGCGTCTCCGAGTGAGCAAAACACCAGGGCAGAAGACTCTGAACATTGCCGTTGACAAAGACCAAGAAATCATCGATTTCTTTGATGGCATTAAGCTTAGGTGGTGTTTTGTGTGCGCCGAAGACAAGAAAGGTGGTTCTGGTAATAATGAGAAGCATCAGTTTGAGCTAACTTTCAACAAGAAGCACAGGGCCAAGCTCATGGGAAGAAGGGGACCTGTAGTGAAAAGCCTCATCAACATTCTCTTTGGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

222

Amino Acids

25.2

Weight (kDa)

9.49

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 82 - 176 4e-23 Domain associated at C-terminal with AAA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18190 AT2G18193
fragaria_vesca FvH4_1g12130 FvH4_1g12690 FvH4_1g12700 FvH4_1g12712 FvH4_1g12716 FvH4_1g12731
malus_domestica MD02G1141300.v1.1 MD02G1141400.v1.1 MD02G1141600.v1.1 MD02G1141800.v1.1 MD02G1142200.v1.1 MD15G1254200.v1.1
prunus_persica Prupe.7G159500_v2.0.a1 Prupe.7G159600_v2.0.a1 Prupe.7G165500_v2.0.a1
pyrus_communis pycom02g11130 pycom02g11150 pycom02g11160 pycom02g11180 pycom15g22350
rosa_chinensis RchiOBHm_Chr2g0099791 RchiOBHm_Chr2g0099801 RchiOBHm_Chr2g0100651 RchiOBHm_Chr2g0100681 RchiOBHm_Chr2g0100691 RchiOBHm_Chr2g0100701 RchiOBHm_Chr2g0100721 RchiOBHm_Chr2g0100801 RchiOBHm_Chr3g0459141
rosa_laevigata RLG00000016914 RLG00000016915 RLG00000016997 RLG00000016998 RLG00000017000 RLG00000017002 RLG00000017012 RLG00000025114
rosa_multiflora Rmu_co8416275.1_g000001 Rmu_sc0001187.1_g000004 Rmu_sc0001497.1_g000006 Rmu_sc0001659.1_g000004 Rmu_sc0001659.1_g000006 Rmu_sc0001659.1_g000008 Rmu_sc0001659.1_g000010 Rmu_sc0008864.1_g000008 Rmu_sc0028022.1_g000001
rosa_roxburghii Rroxscaffold_2G00141850 Rroxscaffold_2G00141930 Rroxscaffold_2G00141940 Rroxscaffold_2G00141950 Rroxscaffold_2G00141960 Rroxscaffold_2G00141970
rosa_rugosa Rorug02G0091800 Rorug02G0091800 Rorug02G0091800 Rorug02G0091900 Rorug02G0092900 Rorug03G0033500
rosa_samantha Rh2BG135600 Rh2BG143900 Rh2BG144000 Rh2BG144200 Rh2BG144300 Rh2BG144400 Rh2BG144500 Rh2BG145500 Rh2CG136900 Rh2CG137000 Rh2CG144800 Rh2CG145000 Rh2CG145100 Rh2CG145200 Rh2CG145500 Rh2CG146400 Rh2DG137400 Rh2DG137500 Rh2DG144300 Rh2DG144500 Rh2DG144600 Rh2DG144700 Rh2DG145000 Rh2DG145900 Rh3BG094700 Rh3DG095300
rosa_wichuraiana Rw2G010920 Rw2G010950 Rw2G010990 Rw3G007860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 225
AccI GTMKAC 1 cut(s) 381
AccIII TCCGGA 3 cut(s) 24, 50, 77
AciI CCGC 5 cut(s) 94, 129, 203, 223, 374
AclWI GGATC 2 cut(s) 61, 88
AcsI RAATTY 1 cut(s) 287
AfiI CCNNNNNNNGG 3 cut(s) 24, 69, 103
AgsI TTSAA 4 cut(s) 151, 283, 409, 589
AjnI CCWGG 1 cut(s) 436
AluBI AGCT 4 cut(s) 40, 508, 580, 610
AluI AGCT 4 cut(s) 40, 508, 580, 610
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 2 cut(s) 61, 88
Aor13HI TCCGGA 3 cut(s) 24, 50, 77
AoxI GGCC 2 cut(s) 186, 603
ApeKI GCWGC 2 cut(s) 40, 371
ApoI RAATTY 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 146
AspLEI GCGC 2 cut(s) 261, 530
AspS9I GGNCC 4 cut(s) 220, 235, 603, 626
AsuHPI GGTGA 1 cut(s) 7
AvaII GGWCC 3 cut(s) 220, 235, 626
BarI GAAGNNNNNNTAC 2 cut(s) 329, 361
BbsI GAAGAC 2 cut(s) 452, 540
BbvI GCAGC 2 cut(s) 27, 383
BccI CCATC 2 cut(s) 108, 491
BceAI ACGGC 2 cut(s) 116, 446
BciT130I CCWGG 1 cut(s) 438
BcoDI GTCTC 1 cut(s) 422
BfmI CTRYAG 2 cut(s) 41, 630
BglI GCCNNNNNGGC 1 cut(s) 200
BisI GCNGC 5 cut(s) 41, 94, 129, 204, 372
BlsI GCNGC 5 cut(s) 42, 95, 130, 205, 373
Bme1390I CCNGG 1 cut(s) 438
Bme18I GGWCC 3 cut(s) 220, 235, 626
BmgT120I GGNCC 4 cut(s) 220, 235, 603, 626
BmiI GGNNCC 1 cut(s) 627
BmrFI CCNGG 1 cut(s) 438
BmrI ACTGGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 577
BmuI ACTGGG 1 cut(s) 116
BpiI GAAGAC 2 cut(s) 452, 540
BplI GAGNNNNNCTC 2 cut(s) 245, 277
Bpu10I CCTNAGC 1 cut(s) 509
Bsa29I ATCGAT 1 cut(s) 486
BsaBI GATNNNNATC 1 cut(s) 58
BsaJI CCNNGG 2 cut(s) 165, 437
BsaWI WCCGGW 3 cut(s) 24, 50, 77
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 69, 103
Bse1I ACTGG 1 cut(s) 122
Bse3DI GCAATG 1 cut(s) 456
Bse8I GATNNNNATC 1 cut(s) 58
BseAI TCCGGA 3 cut(s) 24, 50, 77
BseBI CCWGG 1 cut(s) 438
BseCI ATCGAT 1 cut(s) 486
BseDI CCNNGG 2 cut(s) 165, 437
BseGI GGATG 1 cut(s) 384
BseJI GATNNNNATC 1 cut(s) 58
BseLI CCNNNNNNNGG 3 cut(s) 24, 69, 103
BseMI GCAATG 1 cut(s) 456
BseNI ACTGG 1 cut(s) 122
BseXI GCAGC 2 cut(s) 27, 383
BseYI CCCAGC 2 cut(s) 36, 89
BshFI GGCC 2 cut(s) 188, 605
BshVI ATCGAT 1 cut(s) 486
BsiSI CCGG 3 cut(s) 25, 51, 78
BslFI GGGAC 1 cut(s) 639
BslI CCNNNNNNNGG 3 cut(s) 24, 69, 103
BsmAI GTCTC 1 cut(s) 422
BsmBI CGTCTC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 639
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 2 cut(s) 188, 605
Bsp13I TCCGGA 3 cut(s) 24, 50, 77
Bsp143I GATC 5 cut(s) 53, 80, 136, 276, 305
BspACI CCGC 5 cut(s) 94, 129, 203, 223, 374
BspANI GGCC 2 cut(s) 188, 605
BspDI ATCGAT 1 cut(s) 486
BspEI TCCGGA 3 cut(s) 24, 50, 77
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 627
BspMAI CTGCAG 1 cut(s) 45
BspPI GGATC 2 cut(s) 61, 88
BsrBI CCGCTC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 456
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 2 cut(s) 165, 437
BssMI GATC 5 cut(s) 53, 80, 136, 276, 305
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 2 cut(s) 19, 146
BstDEI CTNAG 1 cut(s) 509
BstENI CCTNNNNNAGG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 384
BstHHI GCGC 2 cut(s) 261, 530
BstKTI GATC 5 cut(s) 56, 83, 139, 279, 308
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 5 cut(s) 53, 80, 136, 276, 305
BstMWI GCNNNNNNNGC 2 cut(s) 200, 351
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 436
BstSFI CTRYAG 2 cut(s) 41, 630
BstV1I GCAGC 2 cut(s) 27, 383
BstV2I GAAGAC 2 cut(s) 452, 540
BstXI CCANNNNNNTGG 1 cut(s) 613
Bsu15I ATCGAT 1 cut(s) 486
BsuRI GGCC 2 cut(s) 188, 605
BsuTUI ATCGAT 1 cut(s) 486
BtsCI GGATG 1 cut(s) 384
CciI TCATGA 1 cut(s) 250
CfoI GCGC 2 cut(s) 261, 530
Cfr13I GGNCC 4 cut(s) 220, 235, 603, 626
ClaI ATCGAT 1 cut(s) 486
CseI GACGC 1 cut(s) 404
CspCI CAANNNNNGTGG 2 cut(s) 526, 561
CviAII CATG 5 cut(s) 157, 214, 251, 316, 613
DdeI CTNAG 1 cut(s) 509
DpnI GATC 5 cut(s) 55, 82, 138, 278, 307
DpnII GATC 5 cut(s) 53, 80, 136, 276, 305
Eco47I GGWCC 3 cut(s) 220, 235, 626
EcoNI CCTNNNNNAGG 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 626
EcoRII CCWGG 1 cut(s) 436
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 5 cut(s) 160, 217, 254, 319, 616
FaiI YATR 9 cut(s) 158, 192, 215, 230, 252, 265, 317, 366, 614
FaqI GGGAC 1 cut(s) 639
FatI CATG 5 cut(s) 156, 213, 250, 315, 612
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 5 cut(s) 41, 94, 129, 204, 372
FokI GGATG 1 cut(s) 371
Fsp4HI GCNGC 5 cut(s) 41, 94, 129, 204, 372
GlaI GCGC 2 cut(s) 260, 529
GluI GCNGC 5 cut(s) 41, 94, 129, 204, 372
GsaI CCCAGC 2 cut(s) 40, 93
HaeIII GGCC 2 cut(s) 188, 605
HapII CCGG 3 cut(s) 25, 51, 78
HgaI GACGC 1 cut(s) 404
HhaI GCGC 2 cut(s) 261, 530
Hin1II CATG 5 cut(s) 160, 217, 254, 319, 616
Hin6I GCGC 2 cut(s) 259, 528
HinP1I GCGC 2 cut(s) 259, 528
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 1 cut(s) 448
HpaII CCGG 3 cut(s) 25, 51, 78
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 2 cut(s) 382, 466
Hpy188I TCNGA 4 cut(s) 141, 389, 422, 453
Hpy188III TCNNGA 6 cut(s) 25, 51, 78, 104, 251, 274
Hpy8I GTNNAC 2 cut(s) 382, 466
Hpy99I CGWCG 2 cut(s) 23, 137
HpyAV CCTTC 1 cut(s) 615
HpyCH4III ACNGT 2 cut(s) 19, 146
HpyCH4V TGCA 2 cut(s) 9, 43
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 351
HpyF3I CTNAG 1 cut(s) 509
Hsp92II CATG 5 cut(s) 160, 217, 254, 319, 616
HspAI GCGC 2 cut(s) 259, 528
Kpn2I TCCGGA 3 cut(s) 24, 50, 77
Kzo9I GATC 5 cut(s) 53, 80, 136, 276, 305
LmnI GCTCC 2 cut(s) 27, 230
Lsp1109I GCAGC 2 cut(s) 27, 383
LweI GCATC 1 cut(s) 577
MalI GATC 5 cut(s) 55, 82, 138, 278, 307
MbiI CCGCTC 1 cut(s) 225
MboI GATC 5 cut(s) 53, 80, 136, 276, 305
MboII GAAGA 5 cut(s) 271, 283, 457, 545, 630
MluCI AATT 1 cut(s) 287
MlyI GAGTC 1 cut(s) 442
MnlI CCTC 6 cut(s) 107, 175, 205, 258, 312, 653
MroI TCCGGA 3 cut(s) 24, 50, 77
MroXI GAANNNNTTC 1 cut(s) 146
MseI TTAA 1 cut(s) 504
MspA1I CMGCKG 2 cut(s) 40, 374
MspI CCGG 3 cut(s) 25, 51, 78
MspR9I CCNGG 1 cut(s) 438
Mva1269I GAATGC 1 cut(s) 206
MvaI CCWGG 1 cut(s) 438
MwoI GCNNNNNNNGC 2 cut(s) 200, 351
NdeII GATC 5 cut(s) 53, 80, 136, 276, 305
NlaIII CATG 5 cut(s) 160, 217, 254, 319, 616
NlaIV GGNNCC 1 cut(s) 627
NmeAIII GCCGAG 1 cut(s) 146
NspI RCATGY 1 cut(s) 160
PagI TCATGA 1 cut(s) 250
PcsI WCGNNNNNNNCGW 2 cut(s) 27, 132
PctI GAATGC 1 cut(s) 206
PdmI GAANNNNTTC 1 cut(s) 146
PkrI GCNGC 5 cut(s) 42, 95, 130, 205, 373
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
PpuMI RGGWCCY 1 cut(s) 626
Psp5II RGGWCCY 1 cut(s) 626
Psp6I CCWGG 1 cut(s) 436
PspFI CCCAGC 2 cut(s) 36, 89
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 1 cut(s) 627
PspPI GGNCC 4 cut(s) 220, 235, 603, 626
PspPPI RGGWCCY 1 cut(s) 626
PstI CTGCAG 1 cut(s) 45
PvuII CAGCTG 1 cut(s) 40
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 5 cut(s) 41, 94, 129, 204, 372
Sau3AI GATC 5 cut(s) 53, 80, 136, 276, 305
Sau96I GGNCC 4 cut(s) 220, 235, 603, 626
SchI GAGTC 1 cut(s) 442
ScrFI CCNGG 1 cut(s) 438
SetI ASST 8 cut(s) 42, 167, 510, 515, 547, 582, 612, 631
SfaNI GCATC 1 cut(s) 577
SfcI CTRYAG 2 cut(s) 41, 630
SinI GGWCC 3 cut(s) 220, 235, 626
Sse9I AATT 1 cut(s) 287
SsiI CCGC 5 cut(s) 94, 129, 203, 223, 374
StyD4I CCNGG 1 cut(s) 436
TaaI ACNGT 2 cut(s) 19, 146
TaqI TCGA 6 cut(s) 56, 83, 135, 275, 304, 486
TasI AATT 1 cut(s) 287
TauI GCSGC 3 cut(s) 96, 131, 206
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TseI GCWGC 2 cut(s) 40, 371
TspDTI ATGAA 2 cut(s) 199, 381
VpaK11BI GGWCC 3 cut(s) 220, 235, 626
XagI CCTNNNNNAGG 1 cut(s) 101
XapI RAATTY 1 cut(s) 287
XceI RCATGY 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 381
XmnI GAANNNNTTC 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.