Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000471

Physical Location & Seq

Genomic Coordinates Reverse (-)

6983201 .. 6984012

Gene Structure 812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12712.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTTCTCAGCCTACGCCTCATTTGCCGCCTCCATGATGCTCCTCCGTTCCATAACTGACCAGCTCATCCCAGCTCCACTCCAAACCTACATTTACTCTTTCCTCCGCCGCCTCTTCACCCCTCTCTCCACCACCTTAACTCTCGTCATCGATGAGCACACCGGCCTCATTGCCCGCAACGAAGTCTTCGACGCAGCAGAGCTCTACCTCCGGACCAAGACTAGTTCACTCACTAACCGTCTCAGGGTCTGCAAGACTCCTAAGAAGAAGACGATCAGCTCCGCCATTGATAAAAACCAAGAGCTAGTCGACACGTTCGAGAACATGAAGCTAACATGGCAGTTTGTGTGTATAGAGCCCACAAAAGGTGGAACGTACTCTTATGAAAAGCGTCACTACGAGCTGAGCTTCCACAAGAAGCACAAGGAGAAAGTGATGGAGTGTTACTTGCCGTATGTGTTGGCTACGGCTAAGGCTATAAAGGAAAAGGAGAAGGTTCTGAAGCTTTACACACTCGACCGAGATGAGAACTCACGCGGTTCGGGGTTGTGGAAGTCCATTGGTCTTGAGCACCCTTCTACATTTGACACAGTGGCGATGGAGCCGGATATGAAGAAGAGGATTGTTGGAGATTTGGACAGGTTTGTGAGGAGGAAAGAGTTTTACAAGAAGCCTTTCCACCAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

230

Amino Acids

26.7

Weight (kDa)

9.45

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	23 - 117	8.9e-23	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18190 AT2G18193
fragaria_vesca	FvH4_1g12130 FvH4_1g12690 FvH4_1g12700 FvH4_1g12712 FvH4_1g12716 FvH4_1g12731
malus_domestica	MD02G1141300.v1.1 MD02G1141400.v1.1 MD02G1141600.v1.1 MD02G1141800.v1.1 MD02G1142200.v1.1 MD15G1254200.v1.1
prunus_persica	Prupe.7G159500_v2.0.a1 Prupe.7G159600_v2.0.a1 Prupe.7G165500_v2.0.a1
pyrus_communis	pycom02g11130 pycom02g11150 pycom02g11160 pycom02g11180 pycom15g22350
rosa_chinensis	RchiOBHm_Chr2g0099791 RchiOBHm_Chr2g0099801 RchiOBHm_Chr2g0100651 RchiOBHm_Chr2g0100681 RchiOBHm_Chr2g0100691 RchiOBHm_Chr2g0100701 RchiOBHm_Chr2g0100721 RchiOBHm_Chr2g0100801 RchiOBHm_Chr3g0459141
rosa_laevigata	RLG00000016914 RLG00000016915 RLG00000016997 RLG00000016998 RLG00000017000 RLG00000017002 RLG00000017012 RLG00000025114
rosa_multiflora	Rmu_co8416275.1_g000001 Rmu_sc0001187.1_g000004 Rmu_sc0001497.1_g000006 Rmu_sc0001659.1_g000004 Rmu_sc0001659.1_g000006 Rmu_sc0001659.1_g000008 Rmu_sc0001659.1_g000010 Rmu_sc0008864.1_g000008 Rmu_sc0028022.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141850 Rroxscaffold_2G00141930 Rroxscaffold_2G00141940 Rroxscaffold_2G00141950 Rroxscaffold_2G00141960 Rroxscaffold_2G00141970
rosa_rugosa	Rorug02G0091800 Rorug02G0091800 Rorug02G0091800 Rorug02G0091900 Rorug02G0092900 Rorug03G0033500
rosa_samantha	Rh2BG135600 Rh2BG143900 Rh2BG144000 Rh2BG144200 Rh2BG144300 Rh2BG144400 Rh2BG144500 Rh2BG145500 Rh2CG136900 Rh2CG137000 Rh2CG144800 Rh2CG145000 Rh2CG145100 Rh2CG145200 Rh2CG145500 Rh2CG146400 Rh2DG137400 Rh2DG137500 Rh2DG144300 Rh2DG144500 Rh2DG144600 Rh2DG144700 Rh2DG145000 Rh2DG145900 Rh3BG094700 Rh3DG095300
rosa_wichuraiana	Rw2G010920 Rw2G010950 Rw2G010990 Rw3G007860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	1 cut(s)	537
AccIII	TCCGGA	1 cut(s)	210
AciI	CCGC	6 cut(s)	27, 106, 109, 175, 282, 537
AcuI	CTGAAG	1 cut(s)	521
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	2 cut(s)	244, 365
AflIII	ACRYGT	1 cut(s)	312
AhlI	ACTAGT	1 cut(s)	221
AluBI	AGCT	9 cut(s)	64, 74, 202, 279, 304, 331, 403, 408, 505
AluI	AGCT	9 cut(s)	64, 74, 202, 279, 304, 331, 403, 408, 505
Alw21I	GWGCWC	3 cut(s)	159, 204, 573
Alw26I	GTCTC	1 cut(s)	245
AlwNI	CAGNNNCTG	1 cut(s)	249
Aor13HI	TCCGGA	1 cut(s)	210
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	194
Asp700I	GAANNNNTTC	1 cut(s)	674
AspS9I	GGNCC	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	213
BanII	GRGCYC	2 cut(s)	204, 360
BbsI	GAAGAC	2 cut(s)	178, 275
Bbv12I	GWGCWC	3 cut(s)	159, 204, 573
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	2 cut(s)	430, 592
BceAI	ACGGC	2 cut(s)	436, 483
BcoDI	GTCTC	1 cut(s)	245
BcuI	ACTAGT	1 cut(s)	221
BfaI	CTAG	2 cut(s)	222, 305
BisI	GCNGC	3 cut(s)	27, 109, 195
BlpI	GCTNAGC	1 cut(s)	404
BlsI	GCNGC	3 cut(s)	28, 110, 196
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	603
BmsI	GCATC	1 cut(s)	27
BpiI	GAAGAC	2 cut(s)	178, 275
Bpu10I	CCTNAGC	1 cut(s)	471
Bpu1102I	GCTNAGC	1 cut(s)	404
BpuEI	CTTGAG	1 cut(s)	587
Bsa29I	ATCGAT	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 365
Bse118I	RCCGGY	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	168
BseAI	TCCGGA	1 cut(s)	210
BseCI	ATCGAT	1 cut(s)	150
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	2 cut(s)	244, 365
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	3 cut(s)	21, 256, 395
BseRI	GAGGAG	2 cut(s)	32, 664
BseXI	GCAGC	1 cut(s)	206
BseYI	CCCAGC	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	537
Bsh1285I	CGRYCG	1 cut(s)	520
BshFI	GGCC	1 cut(s)	165
BshVI	ATCGAT	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	520
BsiHKAI	GWGCWC	3 cut(s)	159, 204, 573
BsiSI	CCGG	3 cut(s)	162, 211, 605
BslI	CCNNNNNNNGG	2 cut(s)	244, 365
BsmAI	GTCTC	1 cut(s)	245
BsmBI	CGTCTC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	165
Bsp1286I	GDGCHC	4 cut(s)	159, 204, 360, 573
Bsp13I	TCCGGA	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	273
Bsp1720I	GCTNAGC	1 cut(s)	404
BspACI	CCGC	6 cut(s)	27, 106, 109, 175, 282, 537
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	3 cut(s)	20, 255, 396
BspDI	ATCGAT	1 cut(s)	150
BspEI	TCCGGA	1 cut(s)	210
BspFNI	CGCG	1 cut(s)	537
BspLI	GGNNCC	1 cut(s)	603
BsrDI	GCAATG	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	161
BssMI	GATC	1 cut(s)	273
Bst4CI	ACNGT	3 cut(s)	239, 592, 687
Bst6I	CTCTTC	2 cut(s)	119, 611
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	5 cut(s)	7, 242, 261, 404, 471
BstF5I	GGATG	1 cut(s)	66
BstFNI	CGCG	1 cut(s)	537
BstKTI	GATC	1 cut(s)	276
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	1 cut(s)	273
BstMCI	CGRYCG	1 cut(s)	520
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 337
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	1 cut(s)	206
BstV2I	GAAGAC	2 cut(s)	178, 275
Bsu15I	ATCGAT	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	165
BsuTUI	ATCGAT	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	611
BtsCI	GGATG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	1 cut(s)	175
CaiI	CAGNNNCTG	1 cut(s)	249
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	213
ClaI	ATCGAT	1 cut(s)	150
CseI	GACGC	2 cut(s)	200, 380
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	3 cut(s)	34, 325, 336
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	5 cut(s)	7, 242, 261, 404, 471
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
Eam1104I	CTCTTC	2 cut(s)	119, 611
EarI	CTCTTC	2 cut(s)	119, 611
EciI	GGCGGA	2 cut(s)	95, 271
Ecl136II	GAGCTC	1 cut(s)	202
Eco24I	GRGCYC	2 cut(s)	204, 360
Eco47I	GGWCC	1 cut(s)	213
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	521
EcoICRI	GAGCTC	1 cut(s)	202
EcoT38I	GRGCYC	2 cut(s)	204, 360
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	3 cut(s)	37, 328, 339
FaiI	YATR	9 cut(s)	35, 53, 326, 337, 353, 384, 456, 479, 611
FatI	CATG	3 cut(s)	33, 324, 335
FauI	CCCGC	1 cut(s)	182
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	3 cut(s)	27, 109, 195
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	2 cut(s)	204, 360
Fsp4HI	GCNGC	3 cut(s)	27, 109, 195
FspBI	CTAG	2 cut(s)	222, 305
GluI	GCNGC	3 cut(s)	27, 109, 195
GsaI	CCCAGC	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	3 cut(s)	162, 211, 605
HgaI	GACGC	2 cut(s)	200, 380
Hin1II	CATG	3 cut(s)	37, 328, 339
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	3 cut(s)	162, 211, 605
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	227, 310
Hpy188I	TCNGA	1 cut(s)	501
Hpy188III	TCNNGA	3 cut(s)	211, 319, 566
Hpy8I	GTNNAC	2 cut(s)	227, 310
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	487, 585
HpyCH4III	ACNGT	3 cut(s)	239, 592, 687
HpyCH4IV	ACGT	2 cut(s)	314, 374
HpyCH4V	TGCA	1 cut(s)	252
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 337
HpyF3I	CTNAG	5 cut(s)	7, 242, 261, 404, 471
HpySE526I	ACGT	2 cut(s)	314, 374
Hsp92II	CATG	3 cut(s)	37, 328, 339
Kpn2I	TCCGGA	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	273
LmnI	GCTCC	4 cut(s)	45, 79, 284, 601
LpnPI	CCDG	7 cut(s)	74, 84, 175, 224, 229, 618, 625
Lsp1109I	GCAGC	1 cut(s)	206
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	2 cut(s)	222, 305
MaeII	ACGT	2 cut(s)	314, 374
MaeIII	GTNAC	2 cut(s)	392, 443
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MboII	GAAGA	6 cut(s)	106, 178, 277, 280, 625, 628
MhlI	GDGCHC	4 cut(s)	159, 204, 360, 573
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	607
MroI	TCCGGA	1 cut(s)	210
MroXI	GAANNNNTTC	1 cut(s)	674
MseI	TTAA	1 cut(s)	137
MspI	CCGG	3 cut(s)	162, 211, 605
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	2 cut(s)	23, 337
NdeII	GATC	1 cut(s)	273
NlaIII	CATG	3 cut(s)	37, 328, 339
NlaIV	GGNNCC	1 cut(s)	603
NmuCI	GTSAC	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 315
PdmI	GAANNNNTTC	1 cut(s)	674
PkrI	GCNGC	3 cut(s)	28, 110, 196
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp124BI	GAGCTC	1 cut(s)	204
PspFI	CCCAGC	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	603
PspPI	GGNCC	1 cut(s)	213
PstNI	CAGNNNCTG	1 cut(s)	249
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SacI	GAGCTC	1 cut(s)	204
SalI	GTCGAC	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	3 cut(s)	27, 109, 195
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	1 cut(s)	213
SchI	GAGTC	1 cut(s)	250
SduI	GDGCHC	4 cut(s)	159, 204, 360, 573
SfaNI	GCATC	1 cut(s)	27
SinI	GGWCC	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
SpeI	ACTAGT	1 cut(s)	221
SsiI	CCGC	6 cut(s)	27, 106, 109, 175, 282, 537
SspMI	CTAG	2 cut(s)	222, 305
SstI	GAGCTC	1 cut(s)	204
TaaI	ACNGT	3 cut(s)	239, 592, 687
TaiI	ACGT	2 cut(s)	317, 377
TaqI	TCGA	5 cut(s)	150, 189, 309, 318, 516
TaqII	GACCGA	1 cut(s)	534
TauI	GCSGC	2 cut(s)	29, 111
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	3 cut(s)	341, 399, 626
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	597
VpaK11BI	GGWCC	1 cut(s)	213
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	674
XspI	CTAG	2 cut(s)	222, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.