Domain associated at C-terminal with AAA
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| AAA_assoc | PF14363 | 41 - 134 | 1.8e-22 | Domain associated at C-terminal with AAA |
| AAA | PF00004 | 239 - 366 | 2.5e-23 | ATPase family associated with various cellular activities (AAA) |
| AAA_lid_At3g28540 | PF25568 | 368 - 434 | 4.3e-21 | At3g28540-like, AAA+ ATPase lid domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 684 |
| Acc36I | ACCTGC | 1 cut(s) | 501 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 505 |
| AccBSI | CCGCTC | 1 cut(s) | 138 |
| AccI | GTMKAC | 1 cut(s) | 851 |
| AciI | CCGC | 4 cut(s) | 72, 101, 136, 246 |
| AcoI | YGGCCR | 1 cut(s) | 768 |
| AcsI | RAATTY | 2 cut(s) | 440, 562 |
| AcuI | CTGAAG | 2 cut(s) | 404, 566 |
| AfaI | GTAC | 4 cut(s) | 149, 257, 739, 1324 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 505, 740 |
| AflIII | ACRYGT | 1 cut(s) | 1092 |
| AgsI | TTSAA | 7 cut(s) | 370, 576, 597, 881, 1187, 1271, 1358 |
| AjnI | CCWGG | 3 cut(s) | 733, 1066, 1140 |
| AleI | CACNNNNGTG | 1 cut(s) | 385 |
| AluBI | AGCT | 7 cut(s) | 448, 550, 753, 805, 996, 1237, 1349 |
| AluI | AGCT | 7 cut(s) | 448, 550, 753, 805, 996, 1237, 1349 |
| Alw21I | GWGCWC | 2 cut(s) | 591, 1086 |
| Alw26I | GTCTC | 1 cut(s) | 339 |
| Alw44I | GTGCAC | 1 cut(s) | 1082 |
| Ama87I | CYCGRG | 2 cut(s) | 510, 958 |
| AoxI | GGCC | 3 cut(s) | 54, 768, 1128 |
| ApaLI | GTGCAC | 1 cut(s) | 1082 |
| ApeKI | GCWGC | 2 cut(s) | 761, 996 |
| ApoI | RAATTY | 2 cut(s) | 440, 562 |
| AspLEI | GCGC | 2 cut(s) | 1001, 1203 |
| AspS9I | GGNCC | 3 cut(s) | 103, 541, 728 |
| AsuC2I | CCSGG | 2 cut(s) | 312, 914 |
| AsuHPI | GGTGA | 3 cut(s) | 434, 490, 1222 |
| AvaI | CYCGRG | 2 cut(s) | 510, 958 |
| AvaII | GGWCC | 3 cut(s) | 103, 541, 728 |
| BaeGI | GKGCMC | 1 cut(s) | 1086 |
| BalI | TGGCCA | 1 cut(s) | 770 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 203, 235 |
| BbsI | GAAGAC | 1 cut(s) | 284 |
| Bbv12I | GWGCWC | 2 cut(s) | 591, 1086 |
| BbvCI | CCTCAGC | 2 cut(s) | 249, 1230 |
| BbvI | GCAGC | 2 cut(s) | 773, 983 |
| BccI | CCATC | 4 cut(s) | 344, 475, 974, 998 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 319, 353 |
| BciT130I | CCWGG | 3 cut(s) | 735, 1068, 1142 |
| BciVI | GTATCC | 1 cut(s) | 15 |
| BcnI | CCSGG | 2 cut(s) | 312, 914 |
| BcoDI | GTCTC | 1 cut(s) | 339 |
| BfaI | CTAG | 1 cut(s) | 1046 |
| BfmI | CTRYAG | 3 cut(s) | 615, 1174, 1218 |
| BfuAI | ACCTGC | 1 cut(s) | 501 |
| BfuI | GTATCC | 1 cut(s) | 15 |
| BglII | AGATCT | 1 cut(s) | 580 |
| BisI | GCNGC | 3 cut(s) | 72, 762, 997 |
| BlsI | GCNGC | 3 cut(s) | 73, 763, 998 |
| Bme1390I | CCNGG | 5 cut(s) | 312, 735, 914, 1068, 1142 |
| Bme18I | GGWCC | 3 cut(s) | 103, 541, 728 |
| BmeT110I | CYCGRG | 2 cut(s) | 510, 958 |
| BmgT120I | GGNCC | 3 cut(s) | 103, 541, 728 |
| BmrFI | CCNGG | 5 cut(s) | 312, 735, 914, 1068, 1142 |
| BmsI | GCATC | 3 cut(s) | 47, 508, 1243 |
| BpiI | GAAGAC | 1 cut(s) | 284 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1147, 1179 |
| BpmI | CTGGAG | 1 cut(s) | 764 |
| Bpu10I | CCTNAGC | 2 cut(s) | 249, 1230 |
| BpuEI | CTTGAG | 3 cut(s) | 245, 605, 685 |
| BpuMI | CCSGG | 2 cut(s) | 312, 914 |
| BsaJI | CCNNGG | 3 cut(s) | 96, 474, 765 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 505, 740 |
| Bse1I | ACTGG | 2 cut(s) | 745, 781 |
| BseBI | CCWGG | 3 cut(s) | 735, 1068, 1142 |
| BseDI | CCNNGG | 3 cut(s) | 96, 474, 765 |
| BseGI | GGATG | 3 cut(s) | 120, 1084, 1336 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 505, 740 |
| BseMII | CTCAG | 4 cut(s) | 240, 340, 615, 1221 |
| BseNI | ACTGG | 2 cut(s) | 745, 781 |
| BseRI | GAGGAG | 4 cut(s) | 149, 172, 682, 1247 |
| BseSI | GKGCMC | 1 cut(s) | 1086 |
| BseXI | GCAGC | 2 cut(s) | 773, 983 |
| BsgI | GTGCAG | 1 cut(s) | 421 |
| BshFI | GGCC | 3 cut(s) | 56, 770, 1130 |
| BsiHKAI | GWGCWC | 2 cut(s) | 591, 1086 |
| BsiHKCI | CYCGRG | 2 cut(s) | 510, 958 |
| BsiSI | CCGG | 2 cut(s) | 312, 913 |
| BslFI | GGGAC | 2 cut(s) | 975, 1351 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 505, 740 |
| BsmAI | GTCTC | 1 cut(s) | 339 |
| BsmBI | CGTCTC | 1 cut(s) | 339 |
| BsmFI | GGGAC | 2 cut(s) | 975, 1351 |
| BsmI | GAATGC | 1 cut(s) | 74 |
| BsnI | GGCC | 3 cut(s) | 56, 770, 1130 |
| BsoBI | CYCGRG | 2 cut(s) | 510, 958 |
| Bsp1286I | GDGCHC | 2 cut(s) | 591, 1086 |
| Bsp143I | GATC | 3 cut(s) | 270, 580, 627 |
| Bsp19I | CCATGG | 2 cut(s) | 96, 765 |
| BspACI | CCGC | 4 cut(s) | 72, 101, 136, 246 |
| BspANI | GGCC | 3 cut(s) | 56, 770, 1130 |
| BspCNI | CTCAG | 4 cut(s) | 241, 339, 616, 1222 |
| BspHI | TCATGA | 1 cut(s) | 1150 |
| BspMAI | CTGCAG | 2 cut(s) | 1178, 1222 |
| BspMI | ACCTGC | 1 cut(s) | 501 |
| BsrBI | CCGCTC | 1 cut(s) | 138 |
| BsrI | ACTGG | 2 cut(s) | 745, 781 |
| BssECI | CCNNGG | 3 cut(s) | 96, 474, 765 |
| BssMI | GATC | 3 cut(s) | 270, 580, 627 |
| BssT1I | CCWWGG | 2 cut(s) | 96, 765 |
| Bst2UI | CCWGG | 3 cut(s) | 735, 1068, 1142 |
| Bst4CI | ACNGT | 2 cut(s) | 898, 1108 |
| Bst6I | CTCTTC | 1 cut(s) | 1238 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1226 |
| BstC8I | GCNNGC | 1 cut(s) | 1315 |
| BstDEI | CTNAG | 5 cut(s) | 249, 326, 524, 624, 1230 |
| BstDSI | CCRYGG | 2 cut(s) | 96, 765 |
| BstEII | GGTNACC | 1 cut(s) | 1210 |
| BstF5I | GGATG | 3 cut(s) | 120, 1084, 1336 |
| BstHHI | GCGC | 2 cut(s) | 1001, 1203 |
| BstKTI | GATC | 3 cut(s) | 273, 583, 630 |
| BstMAI | GTCTC | 1 cut(s) | 339 |
| BstMBI | GATC | 3 cut(s) | 270, 580, 627 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 68, 767, 1226, 1262 |
| BstNI | CCWGG | 3 cut(s) | 735, 1068, 1142 |
| BstNSI | RCATGY | 2 cut(s) | 28, 1096 |
| BstPI | GGTNACC | 1 cut(s) | 1210 |
| BstSCI | CCNGG | 5 cut(s) | 310, 733, 912, 1066, 1140 |
| BstSFI | CTRYAG | 3 cut(s) | 615, 1174, 1218 |
| BstSLI | GKGCMC | 1 cut(s) | 1086 |
| BstV1I | GCAGC | 2 cut(s) | 773, 983 |
| BstV2I | GAAGAC | 1 cut(s) | 284 |
| BstX2I | RGATCY | 1 cut(s) | 580 |
| BstYI | RGATCY | 1 cut(s) | 580 |
| BsuI | GTATCC | 1 cut(s) | 15 |
| BsuRI | GGCC | 3 cut(s) | 56, 770, 1130 |
| BtgI | CCRYGG | 2 cut(s) | 96, 765 |
| BtgZI | GCGATG | 1 cut(s) | 1151 |
| BtsCI | GGATG | 3 cut(s) | 120, 1084, 1336 |
| BtsI | GCAGTG | 1 cut(s) | 409 |
| BtsIMutI | CAGTG | 4 cut(s) | 380, 409, 894, 1104 |
| BveI | ACCTGC | 1 cut(s) | 501 |
| Cac8I | GCNNGC | 1 cut(s) | 1315 |
| CciI | TCATGA | 1 cut(s) | 1150 |
| CfoI | GCGC | 2 cut(s) | 1001, 1203 |
| Cfr13I | GGNCC | 3 cut(s) | 103, 541, 728 |
| CseI | GACGC | 2 cut(s) | 278, 1052 |
| CsiI | ACCWGGT | 1 cut(s) | 733 |
| Csp6I | GTAC | 4 cut(s) | 148, 256, 738, 1323 |
| CviQI | GTAC | 4 cut(s) | 148, 256, 738, 1323 |
| DdeI | CTNAG | 5 cut(s) | 249, 326, 524, 624, 1230 |
| DpnI | GATC | 3 cut(s) | 272, 582, 629 |
| DpnII | GATC | 3 cut(s) | 270, 580, 627 |
| EaeI | YGGCCR | 1 cut(s) | 768 |
| Eam1104I | CTCTTC | 1 cut(s) | 1238 |
| EarI | CTCTTC | 1 cut(s) | 1238 |
| EciI | GGCGGA | 1 cut(s) | 116 |
| Eco130I | CCWWGG | 2 cut(s) | 96, 765 |
| Eco47I | GGWCC | 3 cut(s) | 103, 541, 728 |
| Eco57I | CTGAAG | 2 cut(s) | 404, 566 |
| Eco88I | CYCGRG | 2 cut(s) | 510, 958 |
| Eco91I | GGTNACC | 1 cut(s) | 1210 |
| EcoO109I | RGGNCCY | 1 cut(s) | 541 |
| EcoO65I | GGTNACC | 1 cut(s) | 1210 |
| EcoRII | CCWGG | 3 cut(s) | 733, 1066, 1140 |
| EcoT14I | CCWWGG | 2 cut(s) | 96, 765 |
| ErhI | CCWWGG | 2 cut(s) | 96, 765 |
| Esp3I | CGTCTC | 1 cut(s) | 339 |
| FaqI | GGGAC | 2 cut(s) | 975, 1351 |
| FblI | GTMKAC | 1 cut(s) | 851 |
| Fnu4HI | GCNGC | 3 cut(s) | 72, 762, 997 |
| FokI | GGATG | 3 cut(s) | 107, 1091, 1343 |
| Fsp4HI | GCNGC | 3 cut(s) | 72, 762, 997 |
| FspBI | CTAG | 1 cut(s) | 1046 |
| GlaI | GCGC | 2 cut(s) | 1000, 1202 |
| GluI | GCNGC | 3 cut(s) | 72, 762, 997 |
| GsuI | CTGGAG | 1 cut(s) | 764 |
| HaeIII | GGCC | 3 cut(s) | 56, 770, 1130 |
| HapII | CCGG | 2 cut(s) | 312, 913 |
| HgaI | GACGC | 2 cut(s) | 278, 1052 |
| HhaI | GCGC | 2 cut(s) | 1001, 1203 |
| Hin6I | GCGC | 2 cut(s) | 999, 1201 |
| HinP1I | GCGC | 2 cut(s) | 999, 1201 |
| HincII | GTYRAC | 1 cut(s) | 131 |
| HindII | GTYRAC | 1 cut(s) | 131 |
| HindIII | AAGCTT | 2 cut(s) | 548, 751 |
| HinfI | GANTC | 2 cut(s) | 242, 485 |
| HpaII | CCGG | 2 cut(s) | 312, 913 |
| HphI | GGTGA | 3 cut(s) | 434, 490, 1222 |
| Hpy166II | GTNNAC | 8 cut(s) | 131, 205, 256, 731, 852, 932, 1023, 1084 |
| Hpy188I | TCNGA | 6 cut(s) | 187, 459, 559, 568, 829, 940 |
| Hpy188III | TCNNGA | 9 cut(s) | 262, 544, 584, 631, 664, 960, 1120, 1151, 1268 |
| Hpy8I | GTNNAC | 8 cut(s) | 131, 205, 256, 731, 852, 932, 1023, 1084 |
| HpyAV | CCTTC | 7 cut(s) | 76, 603, 667, 682, 1181, 1265, 1328 |
| HpyCH4III | ACNGT | 2 cut(s) | 898, 1108 |
| HpyCH4V | TGCA | 9 cut(s) | 402, 521, 761, 894, 1055, 1084, 1104, 1176, 1220 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 68, 767, 1226, 1262 |
| HpyF3I | CTNAG | 5 cut(s) | 249, 326, 524, 624, 1230 |
| HspAI | GCGC | 2 cut(s) | 999, 1201 |
| Kzo9I | GATC | 3 cut(s) | 270, 580, 627 |
| LmnI | GCTCC | 2 cut(s) | 802, 1234 |
| Lsp1109I | GCAGC | 2 cut(s) | 773, 983 |
| LweI | GCATC | 3 cut(s) | 47, 508, 1243 |
| MabI | ACCWGGT | 1 cut(s) | 733 |
| MaeI | CTAG | 1 cut(s) | 1046 |
| MaeIII | GTNAC | 3 cut(s) | 114, 422, 1210 |
| MalI | GATC | 3 cut(s) | 272, 582, 629 |
| MbiI | CCGCTC | 1 cut(s) | 138 |
| MboI | GATC | 3 cut(s) | 270, 580, 627 |
| MboII | GAAGA | 8 cut(s) | 284, 362, 472, 659, 893, 929, 1020, 1255 |
| MflI | RGATCY | 1 cut(s) | 580 |
| MhlI | GDGCHC | 2 cut(s) | 591, 1086 |
| MlsI | TGGCCA | 1 cut(s) | 770 |
| MluCI | AATT | 9 cut(s) | 440, 562, 571, 772, 1011, 1182, 1282, 1353, 1366 |
| MluNI | TGGCCA | 1 cut(s) | 770 |
| MlyI | GAGTC | 1 cut(s) | 479 |
| MmeI | TCCRAC | 1 cut(s) | 1284 |
| Mox20I | TGGCCA | 1 cut(s) | 770 |
| MscI | TGGCCA | 1 cut(s) | 770 |
| MseI | TTAA | 1 cut(s) | 1369 |
| MslI | CAYNNNNRTG | 3 cut(s) | 385, 1091, 1208 |
| Msp20I | TGGCCA | 1 cut(s) | 770 |
| MspA1I | CMGCKG | 1 cut(s) | 248 |
| MspI | CCGG | 2 cut(s) | 312, 913 |
| MspR9I | CCNGG | 5 cut(s) | 312, 735, 914, 1068, 1142 |
| Mva1269I | GAATGC | 1 cut(s) | 74 |
| MvaI | CCWGG | 3 cut(s) | 735, 1068, 1142 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 68, 767, 1226, 1262 |
| NciI | CCSGG | 2 cut(s) | 312, 914 |
| NcoI | CCATGG | 2 cut(s) | 96, 765 |
| NdeII | GATC | 3 cut(s) | 270, 580, 627 |
| NmeAIII | GCCGAG | 1 cut(s) | 32 |
| NmuCI | GTSAC | 3 cut(s) | 114, 422, 1210 |
| NspI | RCATGY | 2 cut(s) | 28, 1096 |
| OliI | CACNNNNGTG | 1 cut(s) | 385 |
| PagI | TCATGA | 1 cut(s) | 1150 |
| PciI | ACATGT | 1 cut(s) | 1092 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 345 |
| PctI | GAATGC | 1 cut(s) | 74 |
| PfeI | GAWTC | 1 cut(s) | 242 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 505 |
| PkrI | GCNGC | 3 cut(s) | 73, 763, 998 |
| PleI | GAGTC | 1 cut(s) | 479 |
| PpsI | GAGTC | 1 cut(s) | 479 |
| PpuMI | RGGWCCY | 1 cut(s) | 541 |
| PscI | ACATGT | 1 cut(s) | 1092 |
| PsiI | TTATAA | 1 cut(s) | 684 |
| Psp5II | RGGWCCY | 1 cut(s) | 541 |
| Psp6I | CCWGG | 3 cut(s) | 733, 1066, 1140 |
| PspEI | GGTNACC | 1 cut(s) | 1210 |
| PspGI | CCWGG | 3 cut(s) | 733, 1066, 1140 |
| PspPI | GGNCC | 3 cut(s) | 103, 541, 728 |
| PspPPI | RGGWCCY | 1 cut(s) | 541 |
| PstI | CTGCAG | 2 cut(s) | 1178, 1222 |
| PsuI | RGATCY | 1 cut(s) | 580 |
| RsaI | GTAC | 4 cut(s) | 149, 257, 739, 1324 |
| RsaNI | GTAC | 4 cut(s) | 148, 256, 738, 1323 |
| RseI | CAYNNNNRTG | 3 cut(s) | 385, 1091, 1208 |
| SaqAI | TTAA | 1 cut(s) | 1369 |
| SatI | GCNGC | 3 cut(s) | 72, 762, 997 |
| Sau3AI | GATC | 3 cut(s) | 270, 580, 627 |
| Sau96I | GGNCC | 3 cut(s) | 103, 541, 728 |
| SchI | GAGTC | 1 cut(s) | 479 |
| ScrFI | CCNGG | 5 cut(s) | 312, 735, 914, 1068, 1142 |
| SduI | GDGCHC | 2 cut(s) | 591, 1086 |
| SexAI | ACCWGGT | 1 cut(s) | 733 |
| SfaNI | GCATC | 3 cut(s) | 47, 508, 1243 |
| SfcI | CTRYAG | 3 cut(s) | 615, 1174, 1218 |
| SinI | GGWCC | 3 cut(s) | 103, 541, 728 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 385, 1091, 1208 |
| SmlI | CTYRAG | 3 cut(s) | 260, 584, 664 |
| SmoI | CTYRAG | 3 cut(s) | 260, 584, 664 |
| Sse9I | AATT | 9 cut(s) | 440, 562, 571, 772, 1011, 1182, 1282, 1353, 1366 |
| SsiI | CCGC | 4 cut(s) | 72, 101, 136, 246 |
| SspMI | CTAG | 1 cut(s) | 1046 |
| StyD4I | CCNGG | 5 cut(s) | 310, 733, 912, 1066, 1140 |
| StyI | CCWWGG | 2 cut(s) | 96, 765 |
| TaaI | ACNGT | 2 cut(s) | 898, 1108 |
| TaqI | TCGA | 7 cut(s) | 295, 339, 603, 645, 809, 839, 1072 |
| TaqII | GACCGA | 1 cut(s) | 488 |
| TasI | AATT | 9 cut(s) | 440, 562, 571, 772, 1011, 1182, 1282, 1353, 1366 |
| TatI | WGTACW | 2 cut(s) | 147, 1322 |
| TauI | GCSGC | 1 cut(s) | 74 |
| TfiI | GAWTC | 1 cut(s) | 242 |
| Tru1I | TTAA | 1 cut(s) | 1369 |
| Tru9I | TTAA | 1 cut(s) | 1369 |
| TscAI | CASTG | 4 cut(s) | 387, 409, 901, 1111 |
| TseFI | GTSAC | 3 cut(s) | 114, 422, 1210 |
| TseI | GCWGC | 2 cut(s) | 761, 996 |
| Tsp45I | GTSAC | 3 cut(s) | 114, 422, 1210 |
| TspDTI | ATGAA | 6 cut(s) | 67, 255, 964, 1139, 1256, 1347 |
| TspRI | CASTG | 4 cut(s) | 387, 409, 901, 1111 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 505 |
| VneI | GTGCAC | 1 cut(s) | 1082 |
| VpaK11BI | GGWCC | 3 cut(s) | 103, 541, 728 |
| XapI | RAATTY | 2 cut(s) | 440, 562 |
| XceI | RCATGY | 2 cut(s) | 28, 1096 |
| XmiI | GTMKAC | 1 cut(s) | 851 |
| XspI | CTAG | 1 cut(s) | 1046 |