Rw2G010920

Domain associated at C-terminal with AAA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000471
Physical Location & Seq
Forward (+)
11033113 .. 11034697
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G010920.1

Sequence Viewer

Length: 1509 bp
ATGTTTCCACTCAATTTTGAGAGTCTCAATCTCACAAACATGCCCACAACGGCATCGTCCTTGTTCTCAGCCTATGCCTCCCTCACCGCATTCATAATGTTGGTCCGTTCCATAGTTGATCAGCTGATCCCCCACGAGCTCCGCTACTACATCTACTCGGCCTTCGGCCGCCTCTTCACCCCTCGCCCCTCCGACCTCACTCTCATCGTCGATGAGTGCTGCGGCATGGTTCAAAACCAAATCTATGAGGCGGCGGAGGTCTACCTCCGGACCAAGGTCAGTCCCCTAAACGACCGTCTCCGGGTGAAAAAGGCACCTCGGCAGAAGAACATTACCGTCACGATTGAAAAGGGTGAAGAAATCAAAGACAGTTTCGACGGGATAAACATCAACTGGCGTTTTGTGTGCAGCGGAGGAGAGAATGAGCAGAACAGCCATGCGCAACAGAAGCGTCAGTTTGAGCTGACAGTGAATAAGAAACATCGAGTCAAAGTAATCGAGTCCTACTTGCCGTATGTGCTTGACAGGGCCAAGGCCATTAAGAATGAGGACAAGGTTGTGAAGCTCTATAGCCAAGAGGGGTCATATGATCCGTATGATGATGAATCCAATTCGCACTGGAGTTCGATAAATCTGGAGCATCCGGCTACCTTTGAGACACTTGCCATGGATGCCGAGGTTAAGAGAACGATCATTGAGGATTTGGATAGGTTTATGAGGAGAGAGTTTTATAAGAAGGTTGGGAAGGCCTGGAAAAGAGGGTACCTGTTGTATGGTCCACCCGGGACTGGCAAATCCAGCTTGATTGCTGCCATGGCTAATTATCTCAAGTTTGATATATATGATGTGGAGCTTACTAGTATTGAAGACAACTCGGAGTTGAGGAGGATACTGCTGACTACGACAAACCGTTCTATCTTGGTCATTGAGGATATTGATTGCAGTGTGGAGGTGCAAAACCGGGAATGTGAGGTGGAAGATCATCAACCATCTAACACCAAGTTAACACTCTCCGGCCTACTGAACTTTATAGATGGTTTGTGGTCAAGCTGCGGAGATGAGAGAATCATTGTGTTCACCACTAACCACAAGCACAAGATAGACCCGGCATTGTTGCGTCCTGGTCGAATGGATGTGCACATTCACATGTCATATTGCACTCCAAGCGGGTTCAGGATCTTGGCCTCTAACTACCTTTGTATGCATGAAAGCAATCCTCATCGCCTATGCGGAGAAGTTGAGGAGTTAATCGAGAGCTCAAAGGTCACCCCCGCGGAGATTGCTGAGCAGCTCATGAAGAGTGAGGATGCTGATGTTGCTCTTGAAGGACTTGTCGATTTCCTGAAAAGAAAGAAGGAAGAGAGCAATAAAATTGGGGATGACGGGACCAATAAATCTGAAATTCAAGAAACAGATCAAAACGCAGAAAAGTGGAGCTCAGTCAGTAGCGATGATGAAGTTAAATCTTCTCTAGTGTTGTCTCCTTTTTGTTTGCCGGACAATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

502

Amino Acids

57.23

Weight (kDa)

5.31

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 43 - 136 5.5e-25 Domain associated at C-terminal with AAA
AAA PF00004 255 - 384 2.3e-20 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 386 - 456 2.6e-21 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18190 AT2G18193
fragaria_vesca FvH4_1g12130 FvH4_1g12690 FvH4_1g12700 FvH4_1g12712 FvH4_1g12716 FvH4_1g12731
malus_domestica MD02G1141300.v1.1 MD02G1141400.v1.1 MD02G1141600.v1.1 MD02G1141800.v1.1 MD02G1142200.v1.1 MD15G1254200.v1.1
prunus_persica Prupe.7G159500_v2.0.a1 Prupe.7G159600_v2.0.a1 Prupe.7G165500_v2.0.a1
pyrus_communis pycom02g11130 pycom02g11150 pycom02g11160 pycom02g11180 pycom15g22350
rosa_chinensis RchiOBHm_Chr2g0099791 RchiOBHm_Chr2g0099801 RchiOBHm_Chr2g0100651 RchiOBHm_Chr2g0100681 RchiOBHm_Chr2g0100691 RchiOBHm_Chr2g0100701 RchiOBHm_Chr2g0100721 RchiOBHm_Chr2g0100801 RchiOBHm_Chr3g0459141
rosa_laevigata RLG00000016914 RLG00000016915 RLG00000016997 RLG00000016998 RLG00000017000 RLG00000017002 RLG00000017012 RLG00000025114
rosa_multiflora Rmu_co8416275.1_g000001 Rmu_sc0001187.1_g000004 Rmu_sc0001497.1_g000006 Rmu_sc0001659.1_g000004 Rmu_sc0001659.1_g000006 Rmu_sc0001659.1_g000008 Rmu_sc0001659.1_g000010 Rmu_sc0008864.1_g000008 Rmu_sc0028022.1_g000001
rosa_roxburghii Rroxscaffold_2G00141850 Rroxscaffold_2G00141930 Rroxscaffold_2G00141940 Rroxscaffold_2G00141950 Rroxscaffold_2G00141960 Rroxscaffold_2G00141970
rosa_rugosa Rorug02G0091800 Rorug02G0091800 Rorug02G0091800 Rorug02G0091900 Rorug02G0092900 Rorug03G0033500
rosa_samantha Rh2BG135600 Rh2BG143900 Rh2BG144000 Rh2BG144200 Rh2BG144300 Rh2BG144400 Rh2BG144500 Rh2BG145500 Rh2CG136900 Rh2CG137000 Rh2CG144800 Rh2CG145000 Rh2CG145100 Rh2CG145200 Rh2CG145500 Rh2CG146400 Rh2DG137400 Rh2DG137500 Rh2DG144300 Rh2DG144500 Rh2DG144600 Rh2DG144700 Rh2DG145000 Rh2DG145900 Rh3BG094700 Rh3DG095300
rosa_wichuraiana Rw2G010920 Rw2G010950 Rw2G010990 Rw3G007860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 732
Acc16I TGCGCA 1 cut(s) 441
Acc65I GGTACC 1 cut(s) 762
AccB1I GGYRCC 2 cut(s) 313, 762
AccI GTMKAC 1 cut(s) 261
AccII CGCG 1 cut(s) 1274
AccIII TCCGGA 1 cut(s) 267
AclWI GGATC 3 cut(s) 121, 584, 1184
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 1 cut(s) 1401
AfaI GTAC 1 cut(s) 764
AfiI CCNNNNNNNGG 3 cut(s) 274, 301, 788
AflIII ACRYGT 1 cut(s) 1146
AgsI TTSAA 5 cut(s) 233, 347, 866, 1325, 1406
AhlI ACTAGT 1 cut(s) 857
AjnI CCWGG 2 cut(s) 749, 1120
Alw21I GWGCWC 4 cut(s) 141, 1140, 1259, 1439
Alw26I GTCTC 4 cut(s) 29, 302, 650, 1485
Alw44I GTGCAC 1 cut(s) 1136
AlwI GGATC 3 cut(s) 121, 584, 1184
Ama87I CYCGRG 1 cut(s) 782
Aor13HI TCCGGA 1 cut(s) 267
AoxI GGCC 7 cut(s) 159, 166, 528, 534, 747, 1015, 1182
ApaLI GTGCAC 1 cut(s) 1136
ApeKI GCWGC 5 cut(s) 219, 408, 809, 1050, 1288
ApoI RAATTY 1 cut(s) 1401
Asp718I GGTACC 1 cut(s) 762
AspLEI GCGC 1 cut(s) 442
AspS9I GGNCC 5 cut(s) 103, 270, 528, 776, 1386
AsuC2I CCSGG 5 cut(s) 302, 783, 784, 962, 1106
AsuHPI GGTGA 6 cut(s) 76, 169, 316, 365, 1069, 1258
AvaI CYCGRG 1 cut(s) 782
AvaII GGWCC 4 cut(s) 103, 270, 776, 1386
BaeGI GKGCMC 1 cut(s) 1140
BanI GGYRCC 2 cut(s) 313, 762
BanII GRGCYC 3 cut(s) 141, 1259, 1439
BauI CACGAG 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 873
Bbv12I GWGCWC 4 cut(s) 141, 1140, 1259, 1439
BbvI GCAGC 5 cut(s) 206, 420, 796, 1037, 1300
BccI CCATC 2 cut(s) 997, 1028
BceAI ACGGC 2 cut(s) 66, 496
BciT130I CCWGG 2 cut(s) 751, 1122
BciVI GTATCC 1 cut(s) 882
BclI TGATCA 1 cut(s) 118
BcnI CCSGG 5 cut(s) 302, 783, 784, 962, 1106
BcoDI GTCTC 4 cut(s) 29, 302, 650, 1485
BcuI ACTAGT 1 cut(s) 857
BfaI CTAG 2 cut(s) 858, 1472
BfmI CTRYAG 1 cut(s) 568
BfuI GTATCC 1 cut(s) 882
BisI GCNGC 8 cut(s) 169, 220, 223, 252, 409, 810, 1051, 1289
BlpI GCTNAGC 1 cut(s) 1284
BlsI GCNGC 8 cut(s) 170, 221, 224, 253, 410, 811, 1052, 1290
Bme1390I CCNGG 7 cut(s) 302, 751, 783, 784, 962, 1106, 1122
Bme18I GGWCC 4 cut(s) 103, 270, 776, 1386
BmeT110I CYCGRG 1 cut(s) 782
BmgT120I GGNCC 5 cut(s) 103, 270, 528, 776, 1386
BmiI GGNNCC 3 cut(s) 315, 764, 1387
BmrFI CCNGG 7 cut(s) 302, 751, 783, 784, 962, 1106, 1122
BmsI GCATC 4 cut(s) 62, 649, 661, 1297
BoxI GACNNNNGTC 1 cut(s) 275
BpiI GAAGAC 1 cut(s) 873
BpmI CTGGAG 2 cut(s) 640, 656
Bpu1102I GCTNAGC 1 cut(s) 1284
BpuEI CTTGAG 1 cut(s) 812
BpuMI CCSGG 5 cut(s) 302, 783, 784, 962, 1106
BsaBI GATNNNNATC 1 cut(s) 386
BsaJI CCNNGG 8 cut(s) 273, 317, 531, 666, 675, 782, 813, 1272
BsaWI WCCGGW 1 cut(s) 267
Bsc4I CCNNNNNNNGG 3 cut(s) 274, 301, 788
Bse1I ACTGG 3 cut(s) 398, 623, 793
Bse8I GATNNNNATC 1 cut(s) 386
BseAI TCCGGA 1 cut(s) 267
BseBI CCWGG 2 cut(s) 751, 1122
BseDI CCNNGG 8 cut(s) 273, 317, 531, 666, 675, 782, 813, 1272
BseGI GGATG 5 cut(s) 640, 676, 1138, 1312, 1384
BseJI GATNNNNATC 1 cut(s) 386
BseLI CCNNNNNNNGG 3 cut(s) 274, 301, 788
BseMII CTCAG 3 cut(s) 81, 1275, 1452
BseNI ACTGG 3 cut(s) 398, 623, 793
BseRI GAGGAG 4 cut(s) 429, 733, 898, 1256
BseSI GKGCMC 1 cut(s) 1140
BseX3I CGGCCG 1 cut(s) 166
BseXI GCAGC 5 cut(s) 206, 420, 796, 1037, 1300
BsgI GTGCAG 1 cut(s) 427
Bsh1236I CGCG 1 cut(s) 1274
Bsh1285I CGRYCG 2 cut(s) 169, 295
BshFI GGCC 7 cut(s) 161, 168, 530, 536, 749, 1017, 1184
BshNI GGYRCC 2 cut(s) 313, 762
BsiEI CGRYCG 2 cut(s) 169, 295
BsiHKAI GWGCWC 4 cut(s) 141, 1140, 1259, 1439
BsiHKCI CYCGRG 1 cut(s) 782
BsiSI CCGG 8 cut(s) 268, 301, 644, 783, 961, 1014, 1106, 1496
BslFI GGGAC 3 cut(s) 267, 799, 1399
BslI CCNNNNNNNGG 3 cut(s) 274, 301, 788
BsmAI GTCTC 4 cut(s) 29, 302, 650, 1485
BsmBI CGTCTC 1 cut(s) 302
BsmFI GGGAC 3 cut(s) 267, 799, 1399
BsmI GAATGC 1 cut(s) 89
BsnI GGCC 7 cut(s) 161, 168, 530, 536, 749, 1017, 1184
BsoBI CYCGRG 1 cut(s) 782
Bsp1286I GDGCHC 4 cut(s) 141, 1140, 1259, 1439
Bsp13I TCCGGA 1 cut(s) 267
Bsp143I GATC 7 cut(s) 118, 126, 589, 690, 979, 1176, 1414
Bsp1720I GCTNAGC 1 cut(s) 1284
Bsp19I CCATGG 2 cut(s) 666, 813
BspANI GGCC 7 cut(s) 161, 168, 530, 536, 749, 1017, 1184
BspCNI CTCAG 3 cut(s) 80, 1276, 1451
BspEI TCCGGA 1 cut(s) 267
BspFNI CGCG 1 cut(s) 1274
BspHI TCATGA 1 cut(s) 1293
BspLI GGNNCC 3 cut(s) 315, 764, 1387
BspPI GGATC 3 cut(s) 121, 584, 1184
BspT107I GGYRCC 2 cut(s) 313, 762
BsrI ACTGG 3 cut(s) 398, 623, 793
BssECI CCNNGG 8 cut(s) 273, 317, 531, 666, 675, 782, 813, 1272
BssMI GATC 7 cut(s) 118, 126, 589, 690, 979, 1176, 1414
BssSI CACGAG 1 cut(s) 134
BssT1I CCWWGG 4 cut(s) 273, 531, 666, 813
Bst2BI CACGAG 1 cut(s) 134
Bst2UI CCWGG 2 cut(s) 751, 1122
Bst4CI ACNGT 5 cut(s) 296, 337, 371, 469, 911
Bst6I CTCTTC 3 cut(s) 179, 1292, 1353
BstDEI CTNAG 4 cut(s) 67, 1284, 1438, 1506
BstDSI CCRYGG 3 cut(s) 666, 813, 1272
BstEII GGTNACC 1 cut(s) 1264
BstF5I GGATG 5 cut(s) 640, 676, 1138, 1312, 1384
BstFNI CGCG 1 cut(s) 1274
BstHHI GCGC 1 cut(s) 442
BstKTI GATC 7 cut(s) 121, 129, 592, 693, 982, 1179, 1417
BstMAI GTCTC 4 cut(s) 29, 302, 650, 1485
BstMBI GATC 7 cut(s) 118, 126, 589, 690, 979, 1176, 1414
BstMCI CGRYCG 2 cut(s) 169, 295
BstMWI GCNNNNNNNGC 8 cut(s) 448, 517, 671, 798, 815, 1164, 1280, 1316
BstNI CCWGG 2 cut(s) 751, 1122
BstNSI RCATGY 2 cut(s) 43, 1150
BstPAI GACNNNNGTC 1 cut(s) 275
BstPI GGTNACC 1 cut(s) 1264
BstSCI CCNGG 7 cut(s) 300, 749, 781, 782, 960, 1104, 1120
BstSFI CTRYAG 1 cut(s) 568
BstSLI GKGCMC 1 cut(s) 1140
BstUI CGCG 1 cut(s) 1274
BstV1I GCAGC 5 cut(s) 206, 420, 796, 1037, 1300
BstV2I GAAGAC 1 cut(s) 873
BstX2I RGATCY 1 cut(s) 1176
BstYI RGATCY 1 cut(s) 1176
BstZI CGGCCG 1 cut(s) 166
BsuI GTATCC 1 cut(s) 882
BsuRI GGCC 7 cut(s) 161, 168, 530, 536, 749, 1017, 1184
BtgI CCRYGG 3 cut(s) 666, 813, 1272
BtgZI GCGATG 2 cut(s) 1205, 1464
BtsCI GGATG 5 cut(s) 640, 676, 1138, 1312, 1384
BtsI GCAGTG 1 cut(s) 949
BtsIMutI CAGTG 3 cut(s) 474, 616, 949
CciI TCATGA 1 cut(s) 1293
CfoI GCGC 1 cut(s) 442
Cfr13I GGNCC 5 cut(s) 103, 270, 528, 776, 1386
Cfr42I CCGCGG 1 cut(s) 1275
Cfr9I CCCGGG 1 cut(s) 782
CseI GACGC 2 cut(s) 440, 1106
Csp6I GTAC 1 cut(s) 763
CviAII CATG 8 cut(s) 40, 226, 437, 667, 814, 1147, 1205, 1294
CviQI GTAC 1 cut(s) 763
DdeI CTNAG 4 cut(s) 67, 1284, 1438, 1506
DpnI GATC 7 cut(s) 120, 128, 591, 692, 981, 1178, 1416
DpnII GATC 7 cut(s) 118, 126, 589, 690, 979, 1176, 1414
EaeI YGGCCR 1 cut(s) 166
EagI CGGCCG 1 cut(s) 166
Eam1104I CTCTTC 3 cut(s) 179, 1292, 1353
EarI CTCTTC 3 cut(s) 179, 1292, 1353
EciI GGCGGA 1 cut(s) 269
Ecl136II GAGCTC 3 cut(s) 139, 1257, 1437
EclXI CGGCCG 1 cut(s) 166
Eco130I CCWWGG 4 cut(s) 273, 531, 666, 813
Eco147I AGGCCT 1 cut(s) 749
Eco24I GRGCYC 3 cut(s) 141, 1259, 1439
Eco47I GGWCC 4 cut(s) 103, 270, 776, 1386
Eco52I CGGCCG 1 cut(s) 166
Eco53kI GAGCTC 3 cut(s) 139, 1257, 1437
Eco88I CYCGRG 1 cut(s) 782
Eco91I GGTNACC 1 cut(s) 1264
EcoICRI GAGCTC 3 cut(s) 139, 1257, 1437
EcoO65I GGTNACC 1 cut(s) 1264
EcoRII CCWGG 2 cut(s) 749, 1120
EcoT14I CCWWGG 4 cut(s) 273, 531, 666, 813
EcoT22I ATGCAT 1 cut(s) 1206
EcoT38I GRGCYC 3 cut(s) 141, 1259, 1439
ErhI CCWWGG 4 cut(s) 273, 531, 666, 813
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 8 cut(s) 43, 229, 440, 670, 817, 1150, 1208, 1297
FaqI GGGAC 3 cut(s) 267, 799, 1399
FatI CATG 8 cut(s) 39, 225, 436, 666, 813, 1146, 1204, 1293
FauI CCCGC 2 cut(s) 1160, 1279
FauNDI CATATG 1 cut(s) 586
FbaI TGATCA 1 cut(s) 118
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 8 cut(s) 169, 220, 223, 252, 409, 810, 1051, 1289
FokI GGATG 5 cut(s) 627, 683, 1145, 1319, 1391
FriOI GRGCYC 3 cut(s) 141, 1259, 1439
Fsp4HI GCNGC 8 cut(s) 169, 220, 223, 252, 409, 810, 1051, 1289
FspBI CTAG 2 cut(s) 858, 1472
FspI TGCGCA 1 cut(s) 441
GlaI GCGC 1 cut(s) 441
GluI GCNGC 8 cut(s) 169, 220, 223, 252, 409, 810, 1051, 1289
GsuI CTGGAG 2 cut(s) 640, 656
HaeIII GGCC 7 cut(s) 161, 168, 530, 536, 749, 1017, 1184
HapII CCGG 8 cut(s) 268, 301, 644, 783, 961, 1014, 1106, 1496
HgaI GACGC 2 cut(s) 440, 1106
HhaI GCGC 1 cut(s) 442
Hin1II CATG 8 cut(s) 43, 229, 440, 670, 817, 1150, 1208, 1297
Hin6I GCGC 1 cut(s) 440
HinP1I GCGC 1 cut(s) 440
HincII GTYRAC 1 cut(s) 1005
HindII GTYRAC 1 cut(s) 1005
HinfI GANTC 5 cut(s) 22, 486, 500, 605, 1065
HpaI GTTAAC 1 cut(s) 1005
HpaII CCGG 8 cut(s) 268, 301, 644, 783, 961, 1014, 1106, 1496
HphI GGTGA 6 cut(s) 76, 169, 316, 365, 1069, 1258
Hpy166II GTNNAC 5 cut(s) 262, 779, 1005, 1077, 1138
Hpy188I TCNGA 3 cut(s) 193, 877, 1399
Hpy188III TCNNGA 9 cut(s) 268, 340, 635, 1174, 1252, 1294, 1322, 1342, 1406
Hpy8I GTNNAC 5 cut(s) 262, 779, 1005, 1077, 1138
Hpy99I CGWCG 2 cut(s) 212, 380
HpyAV CCTTC 5 cut(s) 172, 730, 739, 1319, 1348
HpyCH4III ACNGT 5 cut(s) 296, 337, 371, 469, 911
HpyCH4V TGCA 6 cut(s) 408, 942, 955, 1138, 1158, 1204
HpyF10VI GCNNNNNNNGC 8 cut(s) 448, 517, 671, 798, 815, 1164, 1280, 1316
HpyF3I CTNAG 4 cut(s) 67, 1284, 1438, 1506
Hsp92II CATG 8 cut(s) 43, 229, 440, 670, 817, 1150, 1208, 1297
HspAI GCGC 1 cut(s) 440
Kpn2I TCCGGA 1 cut(s) 267
KpnI GGTACC 1 cut(s) 766
Ksp22I TGATCA 1 cut(s) 118
KspAI GTTAAC 1 cut(s) 1005
KspI CCGCGG 1 cut(s) 1275
Kzo9I GATC 7 cut(s) 118, 126, 589, 690, 979, 1176, 1414
LmnI GCTCC 4 cut(s) 144, 637, 850, 1434
Lsp1109I GCAGC 5 cut(s) 206, 420, 796, 1037, 1300
LweI GCATC 4 cut(s) 62, 649, 661, 1297
MaeI CTAG 2 cut(s) 858, 1472
MaeIII GTNAC 2 cut(s) 337, 1264
MalI GATC 7 cut(s) 120, 128, 591, 692, 981, 1178, 1416
MboI GATC 7 cut(s) 118, 126, 589, 690, 979, 1176, 1414
MboII GAAGA 8 cut(s) 166, 337, 368, 878, 989, 1309, 1370, 1458
MflI RGATCY 1 cut(s) 1176
MhlI GDGCHC 4 cut(s) 141, 1140, 1259, 1439
MluCI AATT 5 cut(s) 13, 610, 820, 1371, 1401
MlyI GAGTC 3 cut(s) 31, 495, 509
MmeI TCCRAC 1 cut(s) 216
Mph1103I ATGCAT 1 cut(s) 1206
MroI TCCGGA 1 cut(s) 267
MseI TTAA 5 cut(s) 540, 681, 1004, 1247, 1461
MslI CAYNNNNRTG 2 cut(s) 38, 1145
MspA1I CMGCKG 3 cut(s) 124, 411, 1274
MspI CCGG 8 cut(s) 268, 301, 644, 783, 961, 1014, 1106, 1496
MspR9I CCNGG 7 cut(s) 302, 751, 783, 784, 962, 1106, 1122
Mva1269I GAATGC 1 cut(s) 89
MvaI CCWGG 2 cut(s) 751, 1122
MvnI CGCG 1 cut(s) 1274
MwoI GCNNNNNNNGC 8 cut(s) 448, 517, 671, 798, 815, 1164, 1280, 1316
NciI CCSGG 5 cut(s) 302, 783, 784, 962, 1106
NcoI CCATGG 2 cut(s) 666, 813
NdeI CATATG 1 cut(s) 586
NdeII GATC 7 cut(s) 118, 126, 589, 690, 979, 1176, 1414
NlaIII CATG 8 cut(s) 43, 229, 440, 670, 817, 1150, 1208, 1297
NlaIV GGNNCC 3 cut(s) 315, 764, 1387
NmeAIII GCCGAG 3 cut(s) 137, 298, 700
NmuCI GTSAC 2 cut(s) 337, 1264
NsbI TGCGCA 1 cut(s) 441
NsiI ATGCAT 1 cut(s) 1206
NspI RCATGY 2 cut(s) 43, 1150
PagI TCATGA 1 cut(s) 1293
PceI AGGCCT 1 cut(s) 749
PciI ACATGT 1 cut(s) 1146
PctI GAATGC 1 cut(s) 89
PfeI GAWTC 2 cut(s) 605, 1065
PkrI GCNGC 8 cut(s) 170, 221, 224, 253, 410, 811, 1052, 1290
PleI GAGTC 3 cut(s) 30, 494, 508
PpsI GAGTC 3 cut(s) 30, 494, 508
PscI ACATGT 1 cut(s) 1146
PshAI GACNNNNGTC 1 cut(s) 275
PsiI TTATAA 1 cut(s) 732
Psp124BI GAGCTC 3 cut(s) 141, 1259, 1439
Psp6I CCWGG 2 cut(s) 749, 1120
PspEI GGTNACC 1 cut(s) 1264
PspGI CCWGG 2 cut(s) 749, 1120
PspN4I GGNNCC 3 cut(s) 315, 764, 1387
PspPI GGNCC 5 cut(s) 103, 270, 528, 776, 1386
PsuI RGATCY 1 cut(s) 1176
PvuII CAGCTG 1 cut(s) 124
RsaI GTAC 1 cut(s) 764
RsaNI GTAC 1 cut(s) 763
RseI CAYNNNNRTG 2 cut(s) 38, 1145
SacI GAGCTC 3 cut(s) 141, 1259, 1439
SacII CCGCGG 1 cut(s) 1275
SaqAI TTAA 5 cut(s) 540, 681, 1004, 1247, 1461
SatI GCNGC 8 cut(s) 169, 220, 223, 252, 409, 810, 1051, 1289
Sau3AI GATC 7 cut(s) 118, 126, 589, 690, 979, 1176, 1414
Sau96I GGNCC 5 cut(s) 103, 270, 528, 776, 1386
SchI GAGTC 3 cut(s) 31, 495, 509
ScrFI CCNGG 7 cut(s) 302, 751, 783, 784, 962, 1106, 1122
SduI GDGCHC 4 cut(s) 141, 1140, 1259, 1439
SfaNI GCATC 4 cut(s) 62, 649, 661, 1297
SfcI CTRYAG 1 cut(s) 568
Sfr303I CCGCGG 1 cut(s) 1275
SgrBI CCGCGG 1 cut(s) 1275
SinI GGWCC 4 cut(s) 103, 270, 776, 1386
SmaI CCCGGG 1 cut(s) 784
SmiMI CAYNNNNRTG 2 cut(s) 38, 1145
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
SpeI ACTAGT 1 cut(s) 857
Sse9I AATT 5 cut(s) 13, 610, 820, 1371, 1401
SseBI AGGCCT 1 cut(s) 749
SspMI CTAG 2 cut(s) 858, 1472
SstI GAGCTC 3 cut(s) 141, 1259, 1439
StuI AGGCCT 1 cut(s) 749
StyD4I CCNGG 7 cut(s) 300, 749, 781, 782, 960, 1104, 1120
StyI CCWWGG 4 cut(s) 273, 531, 666, 813
TaaI ACNGT 5 cut(s) 296, 337, 371, 469, 911
TaqI TCGA 8 cut(s) 210, 375, 484, 498, 626, 1126, 1251, 1335
TasI AATT 5 cut(s) 13, 610, 820, 1371, 1401
TauI GCSGC 3 cut(s) 171, 225, 254
TfiI GAWTC 2 cut(s) 605, 1065
Tru1I TTAA 5 cut(s) 540, 681, 1004, 1247, 1461
Tru9I TTAA 5 cut(s) 540, 681, 1004, 1247, 1461
TscAI CASTG 3 cut(s) 474, 623, 949
TseFI GTSAC 2 cut(s) 337, 1264
TseI GCWGC 5 cut(s) 219, 408, 809, 1050, 1288
Tsp45I GTSAC 2 cut(s) 337, 1264
TspDTI ATGAA 5 cut(s) 82, 618, 1221, 1310, 1470
TspGWI ACGGA 2 cut(s) 95, 582
TspMI CCCGGG 1 cut(s) 782
TspRI CASTG 3 cut(s) 474, 623, 949
VneI GTGCAC 1 cut(s) 1136
VpaK11BI GGWCC 4 cut(s) 103, 270, 776, 1386
XapI RAATTY 1 cut(s) 1401
XceI RCATGY 2 cut(s) 43, 1150
XmaI CCCGGG 1 cut(s) 782
XmiI GTMKAC 1 cut(s) 261
XspI CTAG 2 cut(s) 858, 1472
Zsp2I ATGCAT 1 cut(s) 1206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.