Rroxscaffold_2G00141850

Domain associated at C-terminal with AAA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000471
Physical Location & Seq
Forward (+)
80088680 .. 80090056
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00141850.1

Sequence Viewer

Length: 1377 bp
ATGAACACTACCATGATTCCAGCCCTCAATCTCACCAACCTTCCCGCAACAGCCTCGTCCTTGTTCTCCGCCTACGCATCCTTGGCCGCATTCCTCATGTTGGCTCGTTCCATGGCGGACCAGCTCATCCCCCACCAGCTCCGCTCCTACCTACACTCCCTCCTCGGTCACTTCTACACTCCTAAATCCTCCAACCTCACCCTCATAGTCGACGAGAAGTCAAGCATGAACAACAACCAAGTCTACGAGGCGGCGGAGGTCTACCTCCAAACCAAGATCAGTCCCTTCAATGAGCGTCTAAGGGTCAGCAAAACCCCTAGGCAAAAGACCATCAGCCTTGCCATCGAGAAAAACGAGGAGATCATGGACGCTTTCGAGAACATCAAGCTCAAGTGGCGCTACGTGTGCACCGAAAGCAAGGATCATGGTAGTGATAAGCGTCACTTTGAGCTAACGTTCCTTAAGAAGCATAAAGCGTTGGTGGTGGAAGCATACTTGCCATATGTGTTGGCTCGGGCCAAGGCGATTAACGAAGAGGAGAAGGTGCTCAAGCTCAATTCGAGTCACTCAGGTTCGATAGATCTTGAGCACCCTTCGACTTTTGACACATTGGCTATTGATCCGGAGCTGAAGAGCATGATCATCGACGATTTGGATAGGTTTGTGAGCAGAAAGGGGTTCTATAAGAGGGTCGGGAAGGCTTGGAAAAGAGGGTATTTGTTATATGGTCCGCCTGGTACCGGCAAATCTAGCTTGATTGCGGCCATGGCTAATTACCTCAACTTTGATGTGTATGATTTGGAGCTTAGTACCATTCACAGCGACTATCATTTAAAGAGGACATTGCTGGCTACTTCAAATCGGTCCATCTTGGTGATCGAGGACATTGATTGCAGCGCTGAAACCGAAAACCGGGAGACAGAGAGCCGGGTTCAACGCTCTAACAATACGTTTTCGCTCTCTGGCCTGCTCAACTTCATAGATGGTTTGTGGTCAAGTGTCGGTGATGAGAGAATCATTATCTTCACCACTAACCACAAGGATCGGTTAGACCCTGCATTGTTGCGACCTGGACGAATGGACGTGCATATTCACATGTCGTATTGCACTGCAAGCGGGTTCAGGATCTTGGCCTCTAACTACCTTGGCATTCTTTCGAGCAACCCTCATCGGCTCTGCGGGGAAATTGAAGGGTTGATAGAGAGCTCAAACGTCACCCCTGCCGAGGTTGCTGAGGAGCTGATGAAGAGTGATGATGCAGATGTGGCTCTACAAGGGCTTGTCAATTTCCTCAAAAGAAAGAAAGCGGAGGTTGAGAGCAATAAGACCAAGGATGAAGGGACTGATAAAACTGAAAGTCAAGAAGAAGCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

458

Amino Acids

51.61

Weight (kDa)

6.3

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 43 - 136 3.2e-24 Domain associated at C-terminal with AAA
AAA PF00004 239 - 367 3.4e-21 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 369 - 441 8e-22 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18190 AT2G18193
fragaria_vesca FvH4_1g12130 FvH4_1g12690 FvH4_1g12700 FvH4_1g12712 FvH4_1g12716 FvH4_1g12731
malus_domestica MD02G1141300.v1.1 MD02G1141400.v1.1 MD02G1141600.v1.1 MD02G1141800.v1.1 MD02G1142200.v1.1 MD15G1254200.v1.1
prunus_persica Prupe.7G159500_v2.0.a1 Prupe.7G159600_v2.0.a1 Prupe.7G165500_v2.0.a1
pyrus_communis pycom02g11130 pycom02g11150 pycom02g11160 pycom02g11180 pycom15g22350
rosa_chinensis RchiOBHm_Chr2g0099791 RchiOBHm_Chr2g0099801 RchiOBHm_Chr2g0100651 RchiOBHm_Chr2g0100681 RchiOBHm_Chr2g0100691 RchiOBHm_Chr2g0100701 RchiOBHm_Chr2g0100721 RchiOBHm_Chr2g0100801 RchiOBHm_Chr3g0459141
rosa_laevigata RLG00000016914 RLG00000016915 RLG00000016997 RLG00000016998 RLG00000017000 RLG00000017002 RLG00000017012 RLG00000025114
rosa_multiflora Rmu_co8416275.1_g000001 Rmu_sc0001187.1_g000004 Rmu_sc0001497.1_g000006 Rmu_sc0001659.1_g000004 Rmu_sc0001659.1_g000006 Rmu_sc0001659.1_g000008 Rmu_sc0001659.1_g000010 Rmu_sc0008864.1_g000008 Rmu_sc0028022.1_g000001
rosa_roxburghii Rroxscaffold_2G00141850 Rroxscaffold_2G00141930 Rroxscaffold_2G00141940 Rroxscaffold_2G00141950 Rroxscaffold_2G00141960 Rroxscaffold_2G00141970
rosa_rugosa Rorug02G0091800 Rorug02G0091800 Rorug02G0091800 Rorug02G0091900 Rorug02G0092900 Rorug03G0033500
rosa_samantha Rh2BG135600 Rh2BG143900 Rh2BG144000 Rh2BG144200 Rh2BG144300 Rh2BG144400 Rh2BG144500 Rh2BG145500 Rh2CG136900 Rh2CG137000 Rh2CG144800 Rh2CG145000 Rh2CG145100 Rh2CG145200 Rh2CG145500 Rh2CG146400 Rh2DG137400 Rh2DG137500 Rh2DG144300 Rh2DG144500 Rh2DG144600 Rh2DG144700 Rh2DG145000 Rh2DG145900 Rh3BG094700 Rh3DG095300
rosa_wichuraiana Rw2G010920 Rw2G010950 Rw2G010990 Rw3G007860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 737
AccB1I GGYRCC 1 cut(s) 737
AccBSI CCGCTC 1 cut(s) 144
AccI GTMKAC 3 cut(s) 210, 243, 261
AccIII TCCGGA 1 cut(s) 622
AclI AACGTT 1 cut(s) 455
AclWI GGATC 4 cut(s) 429, 614, 1050, 1133
AcoI YGGCCR 2 cut(s) 84, 762
AcuI CTGAAG 1 cut(s) 650
AfaI GTAC 2 cut(s) 739, 811
AfeI AGCGCT 1 cut(s) 898
AfiI CCNNNNNNNGG 4 cut(s) 100, 740, 912, 1225
AflII CTTAAG 1 cut(s) 461
AflIII ACRYGT 2 cut(s) 402, 1095
AgsI TTSAA 4 cut(s) 289, 858, 935, 1190
AhdI GACNNNNNGTC 1 cut(s) 217
AjiI CACGTC 1 cut(s) 1084
AjnI CCWGG 2 cut(s) 733, 1069
Alw21I GWGCWC 4 cut(s) 410, 549, 591, 1208
Alw26I GTCTC 1 cut(s) 911
Alw44I GTGCAC 1 cut(s) 406
AlwI GGATC 4 cut(s) 429, 614, 1050, 1133
Ama87I CYCGRG 1 cut(s) 513
Aor13HI TCCGGA 1 cut(s) 622
Aor51HI AGCGCT 1 cut(s) 898
AoxI GGCC 5 cut(s) 84, 516, 762, 964, 1131
ApaLI GTGCAC 1 cut(s) 406
ApeKI GCWGC 1 cut(s) 894
Asp718I GGTACC 1 cut(s) 737
AspA2I CCTAGG 1 cut(s) 317
AspLEI GCGC 2 cut(s) 399, 899
AspS9I GGNCC 4 cut(s) 118, 516, 728, 864
AsuC2I CCSGG 2 cut(s) 914, 929
AsuHPI GGTGA 6 cut(s) 25, 190, 886, 1016, 1018, 1207
AvaI CYCGRG 1 cut(s) 513
AvaII GGWCC 3 cut(s) 118, 728, 864
AvrII CCTAGG 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 410
BanI GGYRCC 1 cut(s) 737
BanII GRGCYC 1 cut(s) 1208
Bbv12I GWGCWC 4 cut(s) 410, 549, 591, 1208
BbvCI CCTCAGC 1 cut(s) 1233
BbvI GCAGC 1 cut(s) 906
BccI CCATC 4 cut(s) 338, 350, 875, 977
BcgI CGANNNNNNTGC 4 cut(s) 36, 70, 625, 659
BciT130I CCWGG 2 cut(s) 735, 1071
BclI TGATCA 1 cut(s) 639
BcnI CCSGG 2 cut(s) 914, 929
BcoDI GTCTC 1 cut(s) 911
BfaI CTAG 2 cut(s) 318, 750
BfoI RGCGCY 2 cut(s) 400, 900
BfrI CTTAAG 1 cut(s) 461
BglII AGATCT 1 cut(s) 580
BisI GCNGC 4 cut(s) 87, 252, 762, 895
BlnI CCTAGG 1 cut(s) 317
BlsI GCNGC 4 cut(s) 88, 253, 763, 896
Bme1390I CCNGG 4 cut(s) 735, 914, 929, 1071
Bme18I GGWCC 3 cut(s) 118, 728, 864
BmeRI GACNNNNNGTC 1 cut(s) 217
BmeT110I CYCGRG 1 cut(s) 513
BmgBI CACGTC 1 cut(s) 1084
BmgT120I GGNCC 4 cut(s) 118, 516, 728, 864
BmiI GGNNCC 1 cut(s) 739
BmrFI CCNGG 4 cut(s) 735, 914, 929, 1071
BmsI GCATC 2 cut(s) 86, 1246
BplI GAGNNNNNCTC 2 cut(s) 1150, 1182
Bpu10I CCTNAGC 1 cut(s) 1233
BpuEI CTTGAG 3 cut(s) 374, 533, 605
BpuMI CCSGG 2 cut(s) 914, 929
BsaAI YACGTR 1 cut(s) 403
BsaJI CCNNGG 9 cut(s) 81, 111, 163, 317, 519, 765, 1144, 1224, 1329
BsaWI WCCGGW 1 cut(s) 622
BsaXI ACNNNNNCTCC 4 cut(s) 140, 144, 170, 174
Bsc4I CCNNNNNNNGG 4 cut(s) 100, 740, 912, 1225
Bse118I RCCGGY 1 cut(s) 740
Bse3DI GCAATG 1 cut(s) 842
BseAI TCCGGA 1 cut(s) 622
BseBI CCWGG 2 cut(s) 735, 1071
BseDI CCNNGG 9 cut(s) 81, 111, 163, 317, 519, 765, 1144, 1224, 1329
BseGI GGATG 3 cut(s) 77, 126, 1339
BseLI CCNNNNNNNGG 4 cut(s) 100, 740, 912, 1225
BseMI GCAATG 1 cut(s) 842
BseMII CTCAG 2 cut(s) 582, 1224
BseRI GAGGAG 4 cut(s) 152, 371, 551, 1250
BseSI GKGCMC 1 cut(s) 410
BseXI GCAGC 1 cut(s) 906
BshFI GGCC 5 cut(s) 86, 518, 764, 966, 1133
BshNI GGYRCC 1 cut(s) 737
BsiHKAI GWGCWC 4 cut(s) 410, 549, 591, 1208
BsiHKCI CYCGRG 1 cut(s) 513
BsiSI CCGG 4 cut(s) 623, 741, 913, 928
BslFI GGGAC 2 cut(s) 267, 1354
BslI CCNNNNNNNGG 4 cut(s) 100, 740, 912, 1225
BsmAI GTCTC 1 cut(s) 911
BsmFI GGGAC 2 cut(s) 267, 1354
BsmI GAATGC 2 cut(s) 89, 1149
BsnI GGCC 5 cut(s) 86, 518, 764, 966, 1133
BsoBI CYCGRG 1 cut(s) 513
Bsp1286I GDGCHC 4 cut(s) 410, 549, 591, 1208
Bsp13I TCCGGA 1 cut(s) 622
Bsp143I GATC 9 cut(s) 276, 360, 421, 580, 619, 639, 876, 1042, 1125
Bsp19I CCATGG 2 cut(s) 111, 765
BspANI GGCC 5 cut(s) 86, 518, 764, 966, 1133
BspCNI CTCAG 2 cut(s) 581, 1225
BspEI TCCGGA 1 cut(s) 622
BspLI GGNNCC 1 cut(s) 739
BspPI GGATC 4 cut(s) 429, 614, 1050, 1133
BspQI GCTCTTC 1 cut(s) 626
BspT107I GGYRCC 1 cut(s) 737
BspTI CTTAAG 1 cut(s) 461
BsrBI CCGCTC 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 842
BsrFI RCCGGY 1 cut(s) 740
BssAI RCCGGY 1 cut(s) 740
BssECI CCNNGG 9 cut(s) 81, 111, 163, 317, 519, 765, 1144, 1224, 1329
BssMI GATC 9 cut(s) 276, 360, 421, 580, 619, 639, 876, 1042, 1125
BssT1I CCWWGG 7 cut(s) 81, 111, 317, 519, 765, 1144, 1329
Bst2UI CCWGG 2 cut(s) 735, 1071
Bst6I CTCTTC 3 cut(s) 528, 626, 1241
BstAFI CTTAAG 1 cut(s) 461
BstBAI YACGTR 1 cut(s) 403
BstC8I GCNNGC 3 cut(s) 849, 968, 1114
BstDEI CTNAG 4 cut(s) 299, 568, 806, 1233
BstDSI CCRYGG 2 cut(s) 111, 765
BstF5I GGATG 3 cut(s) 77, 126, 1339
BstH2I RGCGCY 2 cut(s) 400, 900
BstHHI GCGC 2 cut(s) 399, 899
BstKTI GATC 9 cut(s) 279, 363, 424, 583, 622, 642, 879, 1045, 1128
BstMAI GTCTC 1 cut(s) 911
BstMBI GATC 9 cut(s) 276, 360, 421, 580, 619, 639, 876, 1042, 1125
BstMWI GCNNNNNNNGC 9 cut(s) 83, 394, 405, 414, 750, 767, 1113, 1229, 1265
BstNI CCWGG 2 cut(s) 735, 1071
BstNSI RCATGY 1 cut(s) 1099
BstSCI CCNGG 4 cut(s) 733, 912, 927, 1069
BstSLI GKGCMC 1 cut(s) 410
BstV1I GCAGC 1 cut(s) 906
BstX2I RGATCY 2 cut(s) 580, 1125
BstYI RGATCY 2 cut(s) 580, 1125
BsuRI GGCC 5 cut(s) 86, 518, 764, 966, 1133
BtgI CCRYGG 2 cut(s) 111, 765
BtrI CACGTC 1 cut(s) 1084
BtsCI GGATG 3 cut(s) 77, 126, 1339
BtsI GCAGTG 1 cut(s) 1107
BtsIMutI CAGTG 1 cut(s) 1107
Cac8I GCNNGC 3 cut(s) 849, 968, 1114
CfoI GCGC 2 cut(s) 399, 899
Cfr10I RCCGGY 1 cut(s) 740
Cfr13I GGNCC 4 cut(s) 118, 516, 728, 864
CseI GACGC 3 cut(s) 284, 377, 428
Csp6I GTAC 2 cut(s) 738, 810
CviAII CATG 9 cut(s) 13, 97, 112, 226, 364, 425, 637, 766, 1096
CviQI GTAC 2 cut(s) 738, 810
DdeI CTNAG 4 cut(s) 299, 568, 806, 1233
DpnI GATC 9 cut(s) 278, 362, 423, 582, 621, 641, 878, 1044, 1127
DpnII GATC 9 cut(s) 276, 360, 421, 580, 619, 639, 876, 1042, 1125
DraI TTTAAA 1 cut(s) 834
DriI GACNNNNNGTC 1 cut(s) 217
EaeI YGGCCR 2 cut(s) 84, 762
Eam1104I CTCTTC 3 cut(s) 528, 626, 1241
Eam1105I GACNNNNNGTC 1 cut(s) 217
EarI CTCTTC 3 cut(s) 528, 626, 1241
EciI GGCGGA 4 cut(s) 58, 131, 269, 720
Ecl136II GAGCTC 1 cut(s) 1206
Eco130I CCWWGG 7 cut(s) 81, 111, 317, 519, 765, 1144, 1329
Eco24I GRGCYC 1 cut(s) 1208
Eco47I GGWCC 3 cut(s) 118, 728, 864
Eco47III AGCGCT 1 cut(s) 898
Eco53kI GAGCTC 1 cut(s) 1206
Eco57I CTGAAG 1 cut(s) 650
Eco88I CYCGRG 1 cut(s) 513
EcoICRI GAGCTC 1 cut(s) 1206
EcoRII CCWGG 2 cut(s) 733, 1069
EcoT14I CCWWGG 7 cut(s) 81, 111, 317, 519, 765, 1144, 1329
EcoT38I GRGCYC 1 cut(s) 1208
ErhI CCWWGG 7 cut(s) 81, 111, 317, 519, 765, 1144, 1329
FaeI CATG 9 cut(s) 16, 100, 115, 229, 367, 428, 640, 769, 1099
FalI AAGNNNNNCTT 2 cut(s) 428, 460
FaqI GGGAC 2 cut(s) 267, 1354
FatI CATG 9 cut(s) 12, 96, 111, 225, 363, 424, 636, 765, 1095
FauI CCCGC 3 cut(s) 52, 1109, 1172
FauNDI CATATG 1 cut(s) 502
FbaI TGATCA 1 cut(s) 639
FblI GTMKAC 3 cut(s) 210, 243, 261
Fnu4HI GCNGC 4 cut(s) 87, 252, 762, 895
FokI GGATG 3 cut(s) 64, 113, 1346
FriOI GRGCYC 1 cut(s) 1208
Fsp4HI GCNGC 4 cut(s) 87, 252, 762, 895
FspBI CTAG 2 cut(s) 318, 750
GlaI GCGC 2 cut(s) 398, 898
GluI GCNGC 4 cut(s) 87, 252, 762, 895
HaeII RGCGCY 2 cut(s) 400, 900
HaeIII GGCC 5 cut(s) 86, 518, 764, 966, 1133
HapII CCGG 4 cut(s) 623, 741, 913, 928
HgaI GACGC 3 cut(s) 284, 377, 428
HhaI GCGC 2 cut(s) 399, 899
Hin1II CATG 9 cut(s) 16, 100, 115, 229, 367, 428, 640, 769, 1099
Hin6I GCGC 2 cut(s) 397, 897
HinP1I GCGC 2 cut(s) 397, 897
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 3 cut(s) 16, 562, 1014
HpaII CCGG 4 cut(s) 623, 741, 913, 928
HphI GGTGA 6 cut(s) 25, 190, 886, 1016, 1018, 1207
Hpy166II GTNNAC 4 cut(s) 211, 244, 262, 408
Hpy188III TCNNGA 7 cut(s) 346, 376, 584, 623, 694, 1123, 1361
Hpy8I GTNNAC 4 cut(s) 211, 244, 262, 408
Hpy99I CGWCG 2 cut(s) 215, 650
HpyAV CCTTC 7 cut(s) 50, 295, 535, 603, 691, 1184, 1331
HpyCH4IV ACGT 5 cut(s) 402, 455, 950, 1083, 1212
HpyCH4V TGCA 7 cut(s) 408, 894, 1058, 1087, 1107, 1112, 1259
HpyF10VI GCNNNNNNNGC 9 cut(s) 83, 394, 405, 414, 750, 767, 1113, 1229, 1265
HpyF3I CTNAG 4 cut(s) 299, 568, 806, 1233
HpySE526I ACGT 5 cut(s) 402, 455, 950, 1083, 1212
Hsp92II CATG 9 cut(s) 16, 100, 115, 229, 367, 428, 640, 769, 1099
HspAI GCGC 2 cut(s) 397, 897
Kpn2I TCCGGA 1 cut(s) 622
KpnI GGTACC 1 cut(s) 741
Ksp22I TGATCA 1 cut(s) 639
Kzo9I GATC 9 cut(s) 276, 360, 421, 580, 619, 639, 876, 1042, 1125
LguI GCTCTTC 1 cut(s) 626
LmnI GCTCC 5 cut(s) 144, 149, 625, 802, 1237
Lsp1109I GCAGC 1 cut(s) 906
LweI GCATC 2 cut(s) 86, 1246
MaeI CTAG 2 cut(s) 318, 750
MaeII ACGT 5 cut(s) 402, 455, 950, 1083, 1212
MaeIII GTNAC 4 cut(s) 167, 440, 563, 1213
MalI GATC 9 cut(s) 278, 362, 423, 582, 621, 641, 878, 1044, 1127
MbiI CCGCTC 1 cut(s) 144
MboI GATC 9 cut(s) 276, 360, 421, 580, 619, 639, 876, 1042, 1125
MboII GAAGA 5 cut(s) 545, 643, 1015, 1258, 1376
MflI RGATCY 2 cut(s) 580, 1125
MhlI GDGCHC 4 cut(s) 410, 549, 591, 1208
MluCI AATT 4 cut(s) 556, 772, 1185, 1285
MlyI GAGTC 1 cut(s) 571
MmeI TCCRAC 1 cut(s) 216
MroI TCCGGA 1 cut(s) 622
MseI TTAA 3 cut(s) 462, 528, 833
MslI CAYNNNNRTG 3 cut(s) 11, 429, 872
MspCI CTTAAG 1 cut(s) 461
MspI CCGG 4 cut(s) 623, 741, 913, 928
MspR9I CCNGG 4 cut(s) 735, 914, 929, 1071
Mva1269I GAATGC 2 cut(s) 89, 1149
MvaI CCWGG 2 cut(s) 735, 1071
MwoI GCNNNNNNNGC 9 cut(s) 83, 394, 405, 414, 750, 767, 1113, 1229, 1265
NciI CCSGG 2 cut(s) 914, 929
NcoI CCATGG 2 cut(s) 111, 765
NdeI CATATG 1 cut(s) 502
NdeII GATC 9 cut(s) 276, 360, 421, 580, 619, 639, 876, 1042, 1125
NlaIII CATG 9 cut(s) 16, 100, 115, 229, 367, 428, 640, 769, 1099
NlaIV GGNNCC 1 cut(s) 739
NmeAIII GCCGAG 1 cut(s) 1249
NmuCI GTSAC 4 cut(s) 167, 440, 563, 1213
NspI RCATGY 1 cut(s) 1099
PciI ACATGT 1 cut(s) 1095
PciSI GCTCTTC 1 cut(s) 626
PcsI WCGNNNNNNNCGW 2 cut(s) 351, 408
PctI GAATGC 2 cut(s) 89, 1149
PfeI GAWTC 2 cut(s) 16, 1014
PkrI GCNGC 4 cut(s) 88, 253, 763, 896
PleI GAGTC 1 cut(s) 570
PpsI GAGTC 1 cut(s) 570
Ppu21I YACGTR 1 cut(s) 403
PscI ACATGT 1 cut(s) 1095
Psp124BI GAGCTC 1 cut(s) 1208
Psp1406I AACGTT 1 cut(s) 455
Psp6I CCWGG 2 cut(s) 733, 1069
PspGI CCWGG 2 cut(s) 733, 1069
PspN4I GGNNCC 1 cut(s) 739
PspPI GGNCC 4 cut(s) 118, 516, 728, 864
PsuI RGATCY 2 cut(s) 580, 1125
RsaI GTAC 2 cut(s) 739, 811
RsaNI GTAC 2 cut(s) 738, 810
RseI CAYNNNNRTG 3 cut(s) 11, 429, 872
SacI GAGCTC 1 cut(s) 1208
SalI GTCGAC 1 cut(s) 209
SapI GCTCTTC 1 cut(s) 626
SaqAI TTAA 3 cut(s) 462, 528, 833
SatI GCNGC 4 cut(s) 87, 252, 762, 895
Sau3AI GATC 9 cut(s) 276, 360, 421, 580, 619, 639, 876, 1042, 1125
Sau96I GGNCC 4 cut(s) 118, 516, 728, 864
SchI GAGTC 1 cut(s) 571
ScrFI CCNGG 4 cut(s) 735, 914, 929, 1071
SduI GDGCHC 4 cut(s) 410, 549, 591, 1208
SfaNI GCATC 2 cut(s) 86, 1246
SinI GGWCC 3 cut(s) 118, 728, 864
SmiMI CAYNNNNRTG 3 cut(s) 11, 429, 872
SmlI CTYRAG 4 cut(s) 389, 461, 548, 584
SmoI CTYRAG 4 cut(s) 389, 461, 548, 584
Sse9I AATT 4 cut(s) 556, 772, 1185, 1285
SspMI CTAG 2 cut(s) 318, 750
SstI GAGCTC 1 cut(s) 1208
StyD4I CCNGG 4 cut(s) 733, 912, 927, 1069
StyI CCWWGG 7 cut(s) 81, 111, 317, 519, 765, 1144, 1329
TaiI ACGT 5 cut(s) 405, 458, 953, 1086, 1215
TaqI TCGA 9 cut(s) 210, 345, 375, 560, 575, 596, 645, 879, 1157
TaqII GACCGA 2 cut(s) 155, 852
TasI AATT 4 cut(s) 556, 772, 1185, 1285
TauI GCSGC 3 cut(s) 89, 254, 764
TfiI GAWTC 2 cut(s) 16, 1014
Tru1I TTAA 3 cut(s) 462, 528, 833
Tru9I TTAA 3 cut(s) 462, 528, 833
TscAI CASTG 1 cut(s) 1114
TseFI GTSAC 4 cut(s) 167, 440, 563, 1213
TseI GCWGC 1 cut(s) 894
Tsp45I GTSAC 4 cut(s) 167, 440, 563, 1213
TspDTI ATGAA 5 cut(s) 17, 242, 967, 1259, 1350
TspRI CASTG 1 cut(s) 1114
Vha464I CTTAAG 1 cut(s) 461
VneI GTGCAC 1 cut(s) 406
VpaK11BI GGWCC 3 cut(s) 118, 728, 864
XceI RCATGY 1 cut(s) 1099
XmaJI CCTAGG 1 cut(s) 317
XmiI GTMKAC 3 cut(s) 210, 243, 261
XspI CTAG 2 cut(s) 318, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.