Rmu_sc0001659.1_g000006

Domain associated at C-terminal with AAA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001659.1
OG0000471
Physical Location & Seq
Forward (+)
26429 .. 27878
1450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001659.1_g000006.1.cds

Sequence Viewer

Length: 1347 bp
atgcccacaacagcatcgtccatgttctcggcctatgcctccttcgccgcattcatcatgttggtcaagtccatggcggaccaactcatgtcactcatcccccctcaactccgctcatacttgtactcaatcctcctccacttctacacccctcactcctctgacctaactctcatcgtggacgagaagtgtggctacatgataaaccaagtctatgaatccgctgaggtgtacctcaagaccaagatcagcccactcaacgagcgtcttcgagtgagcagaacacccggacagaaaactctcagcattaccatcgagagagacgaagaaatcatggacacattcaacgacatcacactgaagtggcgttatgtgtgcactgaagcagaaaaaagtggtgacaaggaaaagcgtaaatttgagctgactttccagaagaaacacaagaccgaggtgatggactcatacctgccctatgtgttggctcgggctgatgcacttagacaagaggaaaaggtcctgaagcttacttccgaaaattcggataattcaatagatcttgagcacccttcaactttcgacacattggctatagcacctgagatcaagaaaatgattatcgaagatttggataggttcttgaggaggaaggagttttataagaaggttggcaaggcttggaaaagagggtatttgctttatggtccacctggaactggaaaatcaagcttgatcgcagccatggccaattatctccagtttgatatttatgatgtggagctttcgagtgtttatagcaactcggatttgaggtcgattatgctgtctacttccaatcgttctattttagtcattgaagatattgattgcactgtggaagcacaaaaccgggaagatgagagaagtgaacaatctgacactaactttacactctcgggactactgaacttcatagatggtatgtggtcaagctgcgctgatggaagaattattgtgttcacaaccaaccacaaggacaaactagaccctgcattgttgcgtcctggtcgaatggatgtgcacattcatatgtcgtattgcactgtgagtgggttcaggattttggcctctaactacctggacattcatgagagcaaccctcatcgcctctgcggagaaattgaagggttgatagagcgcattgaggtgacccctgcagagattgctgaggagctaatgaagagtgatgatgctgatgttgctcttgaaggacttgtcaatttcctcaaaagaaaggaggtggaggttgcgagcaatagtacaagggatgaagggactaaaaaagctgaaattgaagcaacaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

448

Amino Acids

51.05

Weight (kDa)

5.24

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18190 AT2G18193
fragaria_vesca FvH4_1g12130 FvH4_1g12690 FvH4_1g12700 FvH4_1g12712 FvH4_1g12716 FvH4_1g12731
malus_domestica MD02G1141300.v1.1 MD02G1141400.v1.1 MD02G1141600.v1.1 MD02G1141800.v1.1 MD02G1142200.v1.1 MD15G1254200.v1.1
prunus_persica Prupe.7G159500_v2.0.a1 Prupe.7G159600_v2.0.a1 Prupe.7G165500_v2.0.a1
pyrus_communis pycom02g11130 pycom02g11150 pycom02g11160 pycom02g11180 pycom15g22350
rosa_chinensis RchiOBHm_Chr2g0099791 RchiOBHm_Chr2g0099801 RchiOBHm_Chr2g0100651 RchiOBHm_Chr2g0100681 RchiOBHm_Chr2g0100691 RchiOBHm_Chr2g0100701 RchiOBHm_Chr2g0100721 RchiOBHm_Chr2g0100801 RchiOBHm_Chr3g0459141
rosa_laevigata RLG00000016914 RLG00000016915 RLG00000016997 RLG00000016998 RLG00000017000 RLG00000017002 RLG00000017012 RLG00000025114
rosa_multiflora Rmu_co8416275.1_g000001 Rmu_sc0001187.1_g000004 Rmu_sc0001497.1_g000006 Rmu_sc0001659.1_g000004 Rmu_sc0001659.1_g000006 Rmu_sc0001659.1_g000008 Rmu_sc0001659.1_g000010 Rmu_sc0008864.1_g000008 Rmu_sc0028022.1_g000001
rosa_roxburghii Rroxscaffold_2G00141850 Rroxscaffold_2G00141930 Rroxscaffold_2G00141940 Rroxscaffold_2G00141950 Rroxscaffold_2G00141960 Rroxscaffold_2G00141970
rosa_rugosa Rorug02G0091800 Rorug02G0091800 Rorug02G0091800 Rorug02G0091900 Rorug02G0092900 Rorug03G0033500
rosa_samantha Rh2BG135600 Rh2BG143900 Rh2BG144000 Rh2BG144200 Rh2BG144300 Rh2BG144400 Rh2BG144500 Rh2BG145500 Rh2CG136900 Rh2CG137000 Rh2CG144800 Rh2CG145000 Rh2CG145100 Rh2CG145200 Rh2CG145500 Rh2CG146400 Rh2DG137400 Rh2DG137500 Rh2DG144300 Rh2DG144500 Rh2DG144600 Rh2DG144700 Rh2DG145000 Rh2DG145900 Rh3BG094700 Rh3DG095300
rosa_wichuraiana Rw2G010920 Rw2G010950 Rw2G010990 Rw3G007860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 660
Acc36I ACCTGC 1 cut(s) 477
AccBSI CCGCTC 1 cut(s) 114
AccI GTMKAC 1 cut(s) 827
AciI CCGC 5 cut(s) 48, 77, 112, 222, 1152
AcoI YGGCCR 1 cut(s) 744
AcsI RAATTY 2 cut(s) 416, 538
AcuI CTGAAG 3 cut(s) 380, 402, 542
AfaI GTAC 3 cut(s) 125, 233, 1300
AfiI CCNNNNNNNGG 1 cut(s) 716
AgsI TTSAA 7 cut(s) 346, 552, 573, 857, 1163, 1247, 1334
AjnI CCWGG 3 cut(s) 709, 1042, 1116
AleI CACNNNNGTG 1 cut(s) 361
AluBI AGCT 7 cut(s) 424, 526, 729, 781, 972, 1213, 1325
AluI AGCT 7 cut(s) 424, 526, 729, 781, 972, 1213, 1325
Alw21I GWGCWC 3 cut(s) 380, 567, 1062
Alw26I GTCTC 1 cut(s) 315
Alw44I GTGCAC 2 cut(s) 376, 1058
Ama87I CYCGRG 2 cut(s) 486, 934
AoxI GGCC 3 cut(s) 30, 744, 1104
ApaLI GTGCAC 2 cut(s) 376, 1058
ApeKI GCWGC 2 cut(s) 737, 972
ApoI RAATTY 2 cut(s) 416, 538
AspLEI GCGC 2 cut(s) 977, 1179
AspS9I GGNCC 3 cut(s) 79, 517, 704
AsuC2I CCSGG 2 cut(s) 288, 890
AsuHPI GGTGA 3 cut(s) 410, 466, 1198
AvaI CYCGRG 2 cut(s) 486, 934
AvaII GGWCC 3 cut(s) 79, 517, 704
BaeGI GKGCMC 2 cut(s) 380, 1062
BalI TGGCCA 1 cut(s) 746
BarI GAAGNNNNNNTAC 2 cut(s) 179, 211
BbsI GAAGAC 1 cut(s) 260
Bbv12I GWGCWC 3 cut(s) 380, 567, 1062
BbvCI CCTCAGC 2 cut(s) 225, 1206
BbvI GCAGC 2 cut(s) 749, 959
BccI CCATC 4 cut(s) 320, 451, 950, 974
BcgI CGANNNNNNTGC 2 cut(s) 295, 329
BciT130I CCWGG 3 cut(s) 711, 1044, 1118
BcnI CCSGG 2 cut(s) 288, 890
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 1 cut(s) 1022
BfmI CTRYAG 2 cut(s) 591, 1194
BfuAI ACCTGC 1 cut(s) 477
BglII AGATCT 1 cut(s) 556
BisI GCNGC 3 cut(s) 48, 738, 973
BlsI GCNGC 3 cut(s) 49, 739, 974
Bme1390I CCNGG 5 cut(s) 288, 711, 890, 1044, 1118
Bme18I GGWCC 3 cut(s) 79, 517, 704
BmeT110I CYCGRG 2 cut(s) 486, 934
BmgT120I GGNCC 3 cut(s) 79, 517, 704
BmrFI CCNGG 5 cut(s) 288, 711, 890, 1044, 1118
BmsI GCATC 3 cut(s) 23, 484, 1219
BpiI GAAGAC 1 cut(s) 260
BplI GAGNNNNNCTC 2 cut(s) 1123, 1155
BpmI CTGGAG 1 cut(s) 740
Bpu10I CCTNAGC 2 cut(s) 225, 1206
BpuEI CTTGAG 3 cut(s) 221, 581, 661
BpuMI CCSGG 2 cut(s) 288, 890
BsaJI CCNNGG 3 cut(s) 72, 450, 741
Bsc4I CCNNNNNNNGG 1 cut(s) 716
Bse1I ACTGG 2 cut(s) 721, 757
BseBI CCWGG 3 cut(s) 711, 1044, 1118
BseDI CCNNGG 3 cut(s) 72, 450, 741
BseGI GGATG 3 cut(s) 96, 1060, 1312
BseLI CCNNNNNNNGG 1 cut(s) 716
BseMII CTCAG 4 cut(s) 216, 316, 591, 1197
BseNI ACTGG 2 cut(s) 721, 757
BseRI GAGGAG 4 cut(s) 125, 148, 658, 1223
BseSI GKGCMC 2 cut(s) 380, 1062
BseXI GCAGC 2 cut(s) 749, 959
BshFI GGCC 3 cut(s) 32, 746, 1106
BsiHKAI GWGCWC 3 cut(s) 380, 567, 1062
BsiHKCI CYCGRG 2 cut(s) 486, 934
BsiSI CCGG 2 cut(s) 288, 889
BslFI GGGAC 2 cut(s) 951, 1327
BslI CCNNNNNNNGG 1 cut(s) 716
BsmAI GTCTC 1 cut(s) 315
BsmBI CGTCTC 1 cut(s) 315
BsmFI GGGAC 2 cut(s) 951, 1327
BsmI GAATGC 1 cut(s) 50
BsnI GGCC 3 cut(s) 32, 746, 1106
BsoBI CYCGRG 2 cut(s) 486, 934
Bsp1286I GDGCHC 3 cut(s) 380, 567, 1062
Bsp143I GATC 4 cut(s) 246, 556, 603, 732
Bsp19I CCATGG 2 cut(s) 72, 741
BspACI CCGC 5 cut(s) 48, 77, 112, 222, 1152
BspANI GGCC 3 cut(s) 32, 746, 1106
BspCNI CTCAG 4 cut(s) 217, 315, 592, 1198
BspHI TCATGA 1 cut(s) 1126
BspMAI CTGCAG 1 cut(s) 1198
BspMI ACCTGC 1 cut(s) 477
BsrBI CCGCTC 1 cut(s) 114
BsrI ACTGG 2 cut(s) 721, 757
BssECI CCNNGG 3 cut(s) 72, 450, 741
BssMI GATC 4 cut(s) 246, 556, 603, 732
BssT1I CCWWGG 2 cut(s) 72, 741
Bst2UI CCWGG 3 cut(s) 711, 1044, 1118
Bst4CI ACNGT 2 cut(s) 874, 1084
Bst6I CTCTTC 1 cut(s) 1214
BstAPI GCANNNNNTGC 1 cut(s) 1202
BstC8I GCNNGC 1 cut(s) 1291
BstDEI CTNAG 5 cut(s) 225, 302, 500, 600, 1206
BstDSI CCRYGG 2 cut(s) 72, 741
BstEII GGTNACC 1 cut(s) 1186
BstF5I GGATG 3 cut(s) 96, 1060, 1312
BstHHI GCGC 2 cut(s) 977, 1179
BstKTI GATC 4 cut(s) 249, 559, 606, 735
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 4 cut(s) 246, 556, 603, 732
BstMWI GCNNNNNNNGC 4 cut(s) 44, 743, 1202, 1238
BstNI CCWGG 3 cut(s) 711, 1044, 1118
BstPI GGTNACC 1 cut(s) 1186
BstSCI CCNGG 5 cut(s) 286, 709, 888, 1042, 1116
BstSFI CTRYAG 2 cut(s) 591, 1194
BstSLI GKGCMC 2 cut(s) 380, 1062
BstV1I GCAGC 2 cut(s) 749, 959
BstV2I GAAGAC 1 cut(s) 260
BstX2I RGATCY 1 cut(s) 556
BstYI RGATCY 1 cut(s) 556
BsuRI GGCC 3 cut(s) 32, 746, 1106
BtgI CCRYGG 2 cut(s) 72, 741
BtgZI GCGATG 1 cut(s) 1127
BtsCI GGATG 3 cut(s) 96, 1060, 1312
BtsIMutI CAGTG 4 cut(s) 356, 378, 870, 1080
BveI ACCTGC 1 cut(s) 477
Cac8I GCNNGC 1 cut(s) 1291
CciI TCATGA 1 cut(s) 1126
CfoI GCGC 2 cut(s) 977, 1179
Cfr13I GGNCC 3 cut(s) 79, 517, 704
CseI GACGC 2 cut(s) 254, 1028
Csp6I GTAC 3 cut(s) 124, 232, 1299
CviAII CATG 8 cut(s) 22, 58, 73, 88, 199, 334, 742, 1127
CviQI GTAC 3 cut(s) 124, 232, 1299
DdeI CTNAG 5 cut(s) 225, 302, 500, 600, 1206
DpnI GATC 4 cut(s) 248, 558, 605, 734
DpnII GATC 4 cut(s) 246, 556, 603, 732
EaeI YGGCCR 1 cut(s) 744
Eam1104I CTCTTC 1 cut(s) 1214
EarI CTCTTC 1 cut(s) 1214
EciI GGCGGA 1 cut(s) 92
Eco130I CCWWGG 2 cut(s) 72, 741
Eco47I GGWCC 3 cut(s) 79, 517, 704
Eco57I CTGAAG 3 cut(s) 380, 402, 542
Eco88I CYCGRG 2 cut(s) 486, 934
Eco91I GGTNACC 1 cut(s) 1186
EcoO109I RGGNCCY 1 cut(s) 517
EcoO65I GGTNACC 1 cut(s) 1186
EcoRII CCWGG 3 cut(s) 709, 1042, 1116
EcoT14I CCWWGG 2 cut(s) 72, 741
ErhI CCWWGG 2 cut(s) 72, 741
Esp3I CGTCTC 1 cut(s) 315
FaeI CATG 8 cut(s) 25, 61, 76, 91, 202, 337, 745, 1130
FaqI GGGAC 2 cut(s) 951, 1327
FatI CATG 8 cut(s) 21, 57, 72, 87, 198, 333, 741, 1126
FauNDI CATATG 1 cut(s) 1068
FblI GTMKAC 1 cut(s) 827
Fnu4HI GCNGC 3 cut(s) 48, 738, 973
FokI GGATG 3 cut(s) 83, 1067, 1319
Fsp4HI GCNGC 3 cut(s) 48, 738, 973
FspBI CTAG 1 cut(s) 1022
GlaI GCGC 2 cut(s) 976, 1178
GluI GCNGC 3 cut(s) 48, 738, 973
GsuI CTGGAG 1 cut(s) 740
HaeIII GGCC 3 cut(s) 32, 746, 1106
HapII CCGG 2 cut(s) 288, 889
HgaI GACGC 2 cut(s) 254, 1028
HhaI GCGC 2 cut(s) 977, 1179
Hin1II CATG 8 cut(s) 25, 61, 76, 91, 202, 337, 745, 1130
Hin6I GCGC 2 cut(s) 975, 1177
HinP1I GCGC 2 cut(s) 975, 1177
HindIII AAGCTT 2 cut(s) 524, 727
HinfI GANTC 2 cut(s) 218, 461
HpaII CCGG 2 cut(s) 288, 889
HphI GGTGA 3 cut(s) 410, 466, 1198
Hpy166II GTNNAC 8 cut(s) 181, 232, 378, 707, 828, 908, 999, 1060
Hpy188I TCNGA 5 cut(s) 163, 535, 544, 805, 916
Hpy8I GTNNAC 8 cut(s) 181, 232, 378, 707, 828, 908, 999, 1060
HpyAV CCTTC 7 cut(s) 52, 579, 643, 658, 1157, 1241, 1304
HpyCH4III ACNGT 2 cut(s) 874, 1084
HpyCH4V TGCA 7 cut(s) 378, 497, 870, 1031, 1060, 1080, 1196
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 743, 1202, 1238
HpyF3I CTNAG 5 cut(s) 225, 302, 500, 600, 1206
Hsp92II CATG 8 cut(s) 25, 61, 76, 91, 202, 337, 745, 1130
HspAI GCGC 2 cut(s) 975, 1177
Kzo9I GATC 4 cut(s) 246, 556, 603, 732
LmnI GCTCC 2 cut(s) 778, 1210
Lsp1109I GCAGC 2 cut(s) 749, 959
LweI GCATC 3 cut(s) 23, 484, 1219
MaeI CTAG 1 cut(s) 1022
MaeIII GTNAC 3 cut(s) 90, 398, 1186
MalI GATC 4 cut(s) 248, 558, 605, 734
MbiI CCGCTC 1 cut(s) 114
MboI GATC 4 cut(s) 246, 556, 603, 732
MboII GAAGA 8 cut(s) 260, 338, 448, 635, 869, 905, 996, 1231
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 3 cut(s) 380, 567, 1062
MlsI TGGCCA 1 cut(s) 746
MluCI AATT 9 cut(s) 416, 538, 547, 748, 987, 1158, 1258, 1329, 1342
MluNI TGGCCA 1 cut(s) 746
MlyI GAGTC 1 cut(s) 455
Mox20I TGGCCA 1 cut(s) 746
MscI TGGCCA 1 cut(s) 746
MseI TTAA 1 cut(s) 1345
MslI CAYNNNNRTG 3 cut(s) 361, 1067, 1184
Msp20I TGGCCA 1 cut(s) 746
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 2 cut(s) 288, 889
MspR9I CCNGG 5 cut(s) 288, 711, 890, 1044, 1118
Mva1269I GAATGC 1 cut(s) 50
MvaI CCWGG 3 cut(s) 711, 1044, 1118
MwoI GCNNNNNNNGC 4 cut(s) 44, 743, 1202, 1238
NciI CCSGG 2 cut(s) 288, 890
NcoI CCATGG 2 cut(s) 72, 741
NdeI CATATG 1 cut(s) 1068
NdeII GATC 4 cut(s) 246, 556, 603, 732
NlaIII CATG 8 cut(s) 25, 61, 76, 91, 202, 337, 745, 1130
NmeAIII GCCGAG 1 cut(s) 8
NmuCI GTSAC 3 cut(s) 90, 398, 1186
OliI CACNNNNGTG 1 cut(s) 361
PagI TCATGA 1 cut(s) 1126
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PctI GAATGC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 3 cut(s) 49, 739, 974
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
PpuMI RGGWCCY 1 cut(s) 517
PsiI TTATAA 1 cut(s) 660
Psp5II RGGWCCY 1 cut(s) 517
Psp6I CCWGG 3 cut(s) 709, 1042, 1116
PspEI GGTNACC 1 cut(s) 1186
PspGI CCWGG 3 cut(s) 709, 1042, 1116
PspPI GGNCC 3 cut(s) 79, 517, 704
PspPPI RGGWCCY 1 cut(s) 517
PstI CTGCAG 1 cut(s) 1198
PsuI RGATCY 1 cut(s) 556
RsaI GTAC 3 cut(s) 125, 233, 1300
RsaNI GTAC 3 cut(s) 124, 232, 1299
RseI CAYNNNNRTG 3 cut(s) 361, 1067, 1184
SaqAI TTAA 1 cut(s) 1345
SatI GCNGC 3 cut(s) 48, 738, 973
Sau3AI GATC 4 cut(s) 246, 556, 603, 732
Sau96I GGNCC 3 cut(s) 79, 517, 704
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 5 cut(s) 288, 711, 890, 1044, 1118
SduI GDGCHC 3 cut(s) 380, 567, 1062
SfaNI GCATC 3 cut(s) 23, 484, 1219
SfcI CTRYAG 2 cut(s) 591, 1194
SinI GGWCC 3 cut(s) 79, 517, 704
SmiMI CAYNNNNRTG 3 cut(s) 361, 1067, 1184
SmlI CTYRAG 3 cut(s) 236, 560, 640
SmoI CTYRAG 3 cut(s) 236, 560, 640
Sse9I AATT 9 cut(s) 416, 538, 547, 748, 987, 1158, 1258, 1329, 1342
SsiI CCGC 5 cut(s) 48, 77, 112, 222, 1152
SspMI CTAG 1 cut(s) 1022
StyD4I CCNGG 5 cut(s) 286, 709, 888, 1042, 1116
StyI CCWWGG 2 cut(s) 72, 741
TaaI ACNGT 2 cut(s) 874, 1084
TaqI TCGA 7 cut(s) 271, 315, 579, 621, 785, 815, 1048
TaqII GACCGA 1 cut(s) 464
TasI AATT 9 cut(s) 416, 538, 547, 748, 987, 1158, 1258, 1329, 1342
TatI WGTACW 2 cut(s) 123, 1298
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 1345
Tru9I TTAA 1 cut(s) 1345
TscAI CASTG 4 cut(s) 363, 385, 877, 1087
TseFI GTSAC 3 cut(s) 90, 398, 1186
TseI GCWGC 2 cut(s) 737, 972
Tsp45I GTSAC 3 cut(s) 90, 398, 1186
TspDTI ATGAA 7 cut(s) 43, 231, 940, 1055, 1115, 1232, 1323
TspRI CASTG 4 cut(s) 363, 385, 877, 1087
VneI GTGCAC 2 cut(s) 376, 1058
VpaK11BI GGWCC 3 cut(s) 79, 517, 704
XapI RAATTY 2 cut(s) 416, 538
XmiI GTMKAC 1 cut(s) 827
XspI CTAG 1 cut(s) 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.