RLG00000016915

Domain associated at C-terminal with AAA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000471
Physical Location & Seq
Reverse (-)
11197606 .. 11198040
435 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016915

Sequence Viewer

Length: 435 bp
ATGTTTACTCTCAATCCCAAAGATATGCAAACCACAGCATCCACATTGTTCTCAGCCTATGCCTCCTTTGCTGCATCAATGATGTTGGTCCGCTCCATTACAGACCAACTCATTCCCCACCAGTTCCGCTCATACATATACTCAGTCTTCAGTCACTTTTTTACCACTCCCTCCTCGAACCTCTCTTTGATTGTTGAAGAGTGCTGTGGTATGACACGAAACCAAGTCTATGATGCTGCGGAAGTTTACCTCCAAACAAAGATCAATCCTTTCACTGAACGCCTCAAGATCAGCAAAACACCTAGGAAAAAGAACATTAGCATTGCCATGGACAAAGGCGAAGAAATCACCGACACCTTTGGCAATGATATCAAATTGAAGTGGCGCTTCACCGAGCCTGAGAAAAAAACAGAAGGACGAGTACCACTCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

145

Amino Acids

16.53

Weight (kDa)

8.77

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 38 - 131 6.5e-25 Domain associated at C-terminal with AAA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18190 AT2G18193
fragaria_vesca FvH4_1g12130 FvH4_1g12690 FvH4_1g12700 FvH4_1g12712 FvH4_1g12716 FvH4_1g12731
malus_domestica MD02G1141300.v1.1 MD02G1141400.v1.1 MD02G1141600.v1.1 MD02G1141800.v1.1 MD02G1142200.v1.1 MD15G1254200.v1.1
prunus_persica Prupe.7G159500_v2.0.a1 Prupe.7G159600_v2.0.a1 Prupe.7G165500_v2.0.a1
pyrus_communis pycom02g11130 pycom02g11150 pycom02g11160 pycom02g11180 pycom15g22350
rosa_chinensis RchiOBHm_Chr2g0099791 RchiOBHm_Chr2g0099801 RchiOBHm_Chr2g0100651 RchiOBHm_Chr2g0100681 RchiOBHm_Chr2g0100691 RchiOBHm_Chr2g0100701 RchiOBHm_Chr2g0100721 RchiOBHm_Chr2g0100801 RchiOBHm_Chr3g0459141
rosa_laevigata RLG00000016914 RLG00000016915 RLG00000016997 RLG00000016998 RLG00000017000 RLG00000017002 RLG00000017012 RLG00000025114
rosa_multiflora Rmu_co8416275.1_g000001 Rmu_sc0001187.1_g000004 Rmu_sc0001497.1_g000006 Rmu_sc0001659.1_g000004 Rmu_sc0001659.1_g000006 Rmu_sc0001659.1_g000008 Rmu_sc0001659.1_g000010 Rmu_sc0008864.1_g000008 Rmu_sc0028022.1_g000001
rosa_roxburghii Rroxscaffold_2G00141850 Rroxscaffold_2G00141930 Rroxscaffold_2G00141940 Rroxscaffold_2G00141950 Rroxscaffold_2G00141960 Rroxscaffold_2G00141970
rosa_rugosa Rorug02G0091800 Rorug02G0091800 Rorug02G0091800 Rorug02G0091900 Rorug02G0092900 Rorug03G0033500
rosa_samantha Rh2BG135600 Rh2BG143900 Rh2BG144000 Rh2BG144200 Rh2BG144300 Rh2BG144400 Rh2BG144500 Rh2BG145500 Rh2CG136900 Rh2CG137000 Rh2CG144800 Rh2CG145000 Rh2CG145100 Rh2CG145200 Rh2CG145500 Rh2CG146400 Rh2DG137400 Rh2DG137500 Rh2DG144300 Rh2DG144500 Rh2DG144600 Rh2DG144700 Rh2DG145000 Rh2DG145900 Rh3BG094700 Rh3DG095300
rosa_wichuraiana Rw2G010920 Rw2G010950 Rw2G010990 Rw3G007860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 93, 129
AciI CCGC 3 cut(s) 91, 127, 239
AcuI CTGAAG 1 cut(s) 133
AfaI GTAC 1 cut(s) 423
AgsI TTSAA 2 cut(s) 197, 379
ApeKI GCWGC 2 cut(s) 71, 236
AspA2I CCTAGG 1 cut(s) 302
AspLEI GCGC 1 cut(s) 387
AspS9I GGNCC 1 cut(s) 88
AsuHPI GGTGA 2 cut(s) 340, 382
AvaII GGWCC 1 cut(s) 88
AvrII CCTAGG 1 cut(s) 302
BarI GAAGNNNNNNTAC 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 139
BbvI GCAGC 2 cut(s) 58, 223
BfaI CTAG 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 388
BisI GCNGC 2 cut(s) 72, 237
BlnI CCTAGG 1 cut(s) 302
BlsI GCNGC 2 cut(s) 73, 238
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 88
BmsI GCATC 3 cut(s) 47, 83, 223
BpiI GAAGAC 1 cut(s) 139
BplI GAGNNNNNCTC 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 269
BsaJI CCNNGG 2 cut(s) 302, 327
Bse1I ACTGG 1 cut(s) 121
Bse3DI GCAATG 2 cut(s) 321, 370
BseDI CCNNGG 2 cut(s) 302, 327
BseGI GGATG 1 cut(s) 38
BseMI GCAATG 2 cut(s) 321, 370
BseMII CTCAG 3 cut(s) 66, 156, 390
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 2 cut(s) 58, 223
Bsp143I GATC 2 cut(s) 261, 288
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 3 cut(s) 91, 127, 239
BspCNI CTCAG 3 cut(s) 65, 155, 391
BsrBI CCGCTC 2 cut(s) 93, 129
BsrDI GCAATG 2 cut(s) 321, 370
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 2 cut(s) 302, 327
BssMI GATC 2 cut(s) 261, 288
BssT1I CCWWGG 2 cut(s) 302, 327
Bst6I CTCTTC 1 cut(s) 192
BstDEI CTNAG 3 cut(s) 52, 142, 399
BstDSI CCRYGG 1 cut(s) 327
BstF5I GGATG 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 388
BstHHI GCGC 1 cut(s) 387
BstKTI GATC 2 cut(s) 264, 291
BstMBI GATC 2 cut(s) 261, 288
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 58, 223
BstV2I GAAGAC 1 cut(s) 139
BtgI CCRYGG 1 cut(s) 327
BtsCI GGATG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 273
CfoI GCGC 1 cut(s) 387
Cfr13I GGNCC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 422
CviAII CATG 1 cut(s) 328
CviJI RGCY 2 cut(s) 56, 397
CviKI_1 RGCY 2 cut(s) 56, 397
CviQI GTAC 1 cut(s) 422
DdeI CTNAG 3 cut(s) 52, 142, 399
DpnI GATC 2 cut(s) 263, 290
DpnII GATC 2 cut(s) 261, 288
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco130I CCWWGG 2 cut(s) 302, 327
Eco32I GATATC 1 cut(s) 370
Eco47I GGWCC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 133
EcoRV GATATC 1 cut(s) 370
EcoT14I CCWWGG 2 cut(s) 302, 327
ErhI CCWWGG 2 cut(s) 302, 327
FaeI CATG 1 cut(s) 331
FaiI YATR 8 cut(s) 26, 60, 133, 137, 139, 212, 231, 329
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 1 cut(s) 327
Fnu4HI GCNGC 2 cut(s) 72, 237
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 2 cut(s) 72, 237
FspBI CTAG 1 cut(s) 303
GlaI GCGC 1 cut(s) 386
GluI GCNGC 2 cut(s) 72, 237
HaeII RGCGCY 1 cut(s) 388
HhaI GCGC 1 cut(s) 387
Hin1II CATG 1 cut(s) 331
Hin6I GCGC 1 cut(s) 385
HinP1I GCGC 1 cut(s) 385
HphI GGTGA 2 cut(s) 340, 382
Hpy166II GTNNAC 2 cut(s) 6, 247
Hpy188III TCNNGA 1 cut(s) 286
Hpy8I GTNNAC 2 cut(s) 6, 247
HpyAV CCTTC 1 cut(s) 407
HpyCH4V TGCA 2 cut(s) 28, 74
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 3 cut(s) 52, 142, 399
Hsp92II CATG 1 cut(s) 331
HspAI GCGC 1 cut(s) 385
Kzo9I GATC 2 cut(s) 261, 288
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 2 cut(s) 134, 411
Lsp1109I GCAGC 2 cut(s) 58, 223
LweI GCATC 3 cut(s) 47, 83, 223
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 152
MalI GATC 2 cut(s) 263, 290
MbiI CCGCTC 2 cut(s) 93, 129
MboI GATC 2 cut(s) 261, 288
MboII GAAGA 3 cut(s) 139, 209, 353
MluCI AATT 1 cut(s) 374
MnlI CCTC 6 cut(s) 73, 181, 184, 191, 260, 293
MslI CAYNNNNRTG 1 cut(s) 326
MwoI GCNNNNNNNGC 1 cut(s) 68
NcoI CCATGG 1 cut(s) 327
NdeII GATC 2 cut(s) 261, 288
NlaIII CATG 1 cut(s) 331
NmuCI GTSAC 1 cut(s) 152
PkrI GCNGC 2 cut(s) 73, 238
PspPI GGNCC 1 cut(s) 88
RsaI GTAC 1 cut(s) 423
RsaNI GTAC 1 cut(s) 422
RseI CAYNNNNRTG 1 cut(s) 326
SatI GCNGC 2 cut(s) 72, 237
Sau3AI GATC 2 cut(s) 261, 288
Sau96I GGNCC 1 cut(s) 88
SetI ASST 4 cut(s) 183, 252, 304, 359
SfaNI GCATC 3 cut(s) 47, 83, 223
SinI GGWCC 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 1 cut(s) 374
SsiI CCGC 3 cut(s) 91, 127, 239
SspMI CTAG 1 cut(s) 303
StyI CCWWGG 2 cut(s) 302, 327
TaqI TCGA 1 cut(s) 176
TasI AATT 1 cut(s) 374
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 2 cut(s) 71, 236
Tsp45I GTSAC 1 cut(s) 152
TspRI CASTG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 88
XmaJI CCTAGG 1 cut(s) 302
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.