Rroxscaffold_2G00141950

Domain associated at C-terminal with AAA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000471
Physical Location & Seq
Reverse (-)
80138706 .. 80140371
1666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00141950.1

Sequence Viewer

Length: 1299 bp
ATGGCGGACCAACTCATGTCACTCATCCCCCCTCAACTCCGCTCATACTTGTACTCAATCCTCCTCCACTTCTACACCCCTCACTCCTCTGACCTAACTCTCATCGTGGACGAGAAGTGTGGCTACATGATAAACCAAGTCTATGAATCCGCTGAGGTGTACCTCAAGACCAAGATCAGCCCACTCAACGAGCGTCTTCGAGTGAGCAGAACACCCGGACAGAAAACTCTCAGCATTACCATCGACAGAGACGAAGAAATCATGGACACATTCAACGACATCACACTGAAGTGGCGTTATGTGTGCACTGAAGCAGAAAAAAGTGGTGACAAGGAAAAGCGTAAATTTGAGCTGACTTTCCAGAAGAAACACAAGACCGAGGTGATGGACTCGTACCTGCCCTATGTGTTGGCTCGGGCTGATGCACTTAGACAAGAGGAAAAGGTCCTGAAGCTTACTTCTGAAAATTCGGATAATTCAATAGATCTTGAGCACCCTTCAACTTTCGACACATTGGCTATAGCACCTGAGATCAAGAAAATGATTATCGAAGATTTGGATAGGTTCTTGAGGAGGAAGGAGTTTTATAAGAAGGTTGGCAAGGCTTGGAAAAGAGGGTATTTGCTCTATGGTCCACCTGGTACTGGAAAATCAAGCTTGATTGCAGCCATGGCCAATTATCTCCAGTTTGATATTTATGATGTGGAGCTTTCGAGTGTTTATAGCAACTCGGATTTGAGGTCGATTATGCTGTCTACTTCCAATCGTTCTATTTTAGTCATTGAAGATATTGATTGCACTGTGGAAGCACAAAACCGGGAAGATGAGAGAAGTGAACAATCTGACACCAACTTTACACTCTCGGGACTACTGAACTTCATAGATGGTATGTGGTCAAGCTGCGCTGATGGAAGAATTATTGTGTTCACAACCAACCACAAGGACAAACTAGACCCTGCATTGTTGCGTCCTGGTCGAATGGATGTGCACATTCATATGTCGTATTGCACTGTGAGTGGGTTCAGGATTTTGGCCTCTAACTACCTGGACATTCATGAGAGCAACCCTCATCGCCTCTGCGGAGAAATTGAAGGGTTGATAGAGCGCATTGAGGTGACCCCTGCCGAGATTGCTGAGGAGCTAATGAAGAGTGATGATGCTGCTGTTGCTCTTGAAGGACTCGTCAATTTCCTCAAAAGAAAGGAGGTGGAGGTTGCGAGCAATAGTACAAGGGATGAAGGGACTAAAAAAGCTGAAAAATTGAAGCAACAAATTAAGATGCAGGAAAAGAGGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

432

Amino Acids

49.62

Weight (kDa)

5.66

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 9 - 102 1.4e-22 Domain associated at C-terminal with AAA
AAA PF00004 207 - 334 2e-23 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 336 - 404 4.8e-21 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18190 AT2G18193
fragaria_vesca FvH4_1g12130 FvH4_1g12690 FvH4_1g12700 FvH4_1g12712 FvH4_1g12716 FvH4_1g12731
malus_domestica MD02G1141300.v1.1 MD02G1141400.v1.1 MD02G1141600.v1.1 MD02G1141800.v1.1 MD02G1142200.v1.1 MD15G1254200.v1.1
prunus_persica Prupe.7G159500_v2.0.a1 Prupe.7G159600_v2.0.a1 Prupe.7G165500_v2.0.a1
pyrus_communis pycom02g11130 pycom02g11150 pycom02g11160 pycom02g11180 pycom15g22350
rosa_chinensis RchiOBHm_Chr2g0099791 RchiOBHm_Chr2g0099801 RchiOBHm_Chr2g0100651 RchiOBHm_Chr2g0100681 RchiOBHm_Chr2g0100691 RchiOBHm_Chr2g0100701 RchiOBHm_Chr2g0100721 RchiOBHm_Chr2g0100801 RchiOBHm_Chr3g0459141
rosa_laevigata RLG00000016914 RLG00000016915 RLG00000016997 RLG00000016998 RLG00000017000 RLG00000017002 RLG00000017012 RLG00000025114
rosa_multiflora Rmu_co8416275.1_g000001 Rmu_sc0001187.1_g000004 Rmu_sc0001497.1_g000006 Rmu_sc0001659.1_g000004 Rmu_sc0001659.1_g000006 Rmu_sc0001659.1_g000008 Rmu_sc0001659.1_g000010 Rmu_sc0008864.1_g000008 Rmu_sc0028022.1_g000001
rosa_roxburghii Rroxscaffold_2G00141850 Rroxscaffold_2G00141930 Rroxscaffold_2G00141940 Rroxscaffold_2G00141950 Rroxscaffold_2G00141960 Rroxscaffold_2G00141970
rosa_rugosa Rorug02G0091800 Rorug02G0091800 Rorug02G0091800 Rorug02G0091900 Rorug02G0092900 Rorug03G0033500
rosa_samantha Rh2BG135600 Rh2BG143900 Rh2BG144000 Rh2BG144200 Rh2BG144300 Rh2BG144400 Rh2BG144500 Rh2BG145500 Rh2CG136900 Rh2CG137000 Rh2CG144800 Rh2CG145000 Rh2CG145100 Rh2CG145200 Rh2CG145500 Rh2CG146400 Rh2DG137400 Rh2DG137500 Rh2DG144300 Rh2DG144500 Rh2DG144600 Rh2DG144700 Rh2DG145000 Rh2DG145900 Rh3BG094700 Rh3DG095300
rosa_wichuraiana Rw2G010920 Rw2G010950 Rw2G010990 Rw3G007860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 588
Acc36I ACCTGC 1 cut(s) 405
AccBSI CCGCTC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 755
AciI CCGC 4 cut(s) 5, 40, 150, 1080
AcoI YGGCCR 1 cut(s) 672
AcsI RAATTY 2 cut(s) 344, 466
AcuI CTGAAG 3 cut(s) 308, 330, 470
AfaI GTAC 5 cut(s) 53, 161, 395, 643, 1228
AfiI CCNNNNNNNGG 1 cut(s) 644
AgsI TTSAA 7 cut(s) 274, 480, 501, 785, 1091, 1175, 1264
AjnI CCWGG 3 cut(s) 637, 970, 1044
AleI CACNNNNGTG 1 cut(s) 289
AluBI AGCT 7 cut(s) 352, 454, 657, 709, 900, 1141, 1253
AluI AGCT 7 cut(s) 352, 454, 657, 709, 900, 1141, 1253
Alw21I GWGCWC 3 cut(s) 308, 495, 990
Alw26I GTCTC 1 cut(s) 243
Alw44I GTGCAC 2 cut(s) 304, 986
Ama87I CYCGRG 2 cut(s) 414, 862
AoxI GGCC 2 cut(s) 672, 1032
ApaLI GTGCAC 2 cut(s) 304, 986
ApeKI GCWGC 3 cut(s) 665, 900, 1160
ApoI RAATTY 2 cut(s) 344, 466
AspLEI GCGC 3 cut(s) 905, 1107, 1296
AspS9I GGNCC 3 cut(s) 7, 445, 632
AsuC2I CCSGG 2 cut(s) 216, 818
AsuHPI GGTGA 3 cut(s) 338, 394, 1126
AvaI CYCGRG 2 cut(s) 414, 862
AvaII GGWCC 3 cut(s) 7, 445, 632
BaeGI GKGCMC 2 cut(s) 308, 990
BalI TGGCCA 1 cut(s) 674
BarI GAAGNNNNNNTAC 2 cut(s) 107, 139
BbsI GAAGAC 1 cut(s) 188
Bbv12I GWGCWC 3 cut(s) 308, 495, 990
BbvCI CCTCAGC 2 cut(s) 153, 1134
BbvI GCAGC 3 cut(s) 677, 887, 1147
BccI CCATC 4 cut(s) 248, 379, 878, 902
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BciT130I CCWGG 3 cut(s) 639, 972, 1046
BcnI CCSGG 2 cut(s) 216, 818
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 1 cut(s) 950
BfmI CTRYAG 1 cut(s) 519
BfoI RGCGCY 1 cut(s) 1297
BfuAI ACCTGC 1 cut(s) 405
BglII AGATCT 1 cut(s) 484
BisI GCNGC 3 cut(s) 666, 901, 1161
BlsI GCNGC 3 cut(s) 667, 902, 1162
Bme1390I CCNGG 5 cut(s) 216, 639, 818, 972, 1046
Bme18I GGWCC 3 cut(s) 7, 445, 632
BmeT110I CYCGRG 2 cut(s) 414, 862
BmgT120I GGNCC 3 cut(s) 7, 445, 632
BmrFI CCNGG 5 cut(s) 216, 639, 818, 972, 1046
BmsI GCATC 3 cut(s) 412, 1147, 1269
BpiI GAAGAC 1 cut(s) 188
BplI GAGNNNNNCTC 2 cut(s) 1051, 1083
BpmI CTGGAG 1 cut(s) 668
Bpu10I CCTNAGC 2 cut(s) 153, 1134
BpuEI CTTGAG 3 cut(s) 149, 509, 589
BpuMI CCSGG 2 cut(s) 216, 818
BsaJI CCNNGG 2 cut(s) 378, 669
Bsc4I CCNNNNNNNGG 1 cut(s) 644
Bse1I ACTGG 2 cut(s) 649, 685
BseBI CCWGG 3 cut(s) 639, 972, 1046
BseDI CCNNGG 2 cut(s) 378, 669
BseGI GGATG 3 cut(s) 24, 988, 1240
BseLI CCNNNNNNNGG 1 cut(s) 644
BseMII CTCAG 4 cut(s) 144, 244, 519, 1125
BseNI ACTGG 2 cut(s) 649, 685
BseRI GAGGAG 4 cut(s) 53, 76, 586, 1151
BseSI GKGCMC 2 cut(s) 308, 990
BseXI GCAGC 3 cut(s) 677, 887, 1147
BshFI GGCC 2 cut(s) 674, 1034
BsiHKAI GWGCWC 3 cut(s) 308, 495, 990
BsiHKCI CYCGRG 2 cut(s) 414, 862
BsiSI CCGG 2 cut(s) 216, 817
BslFI GGGAC 2 cut(s) 879, 1255
BslI CCNNNNNNNGG 1 cut(s) 644
BsmAI GTCTC 1 cut(s) 243
BsmBI CGTCTC 1 cut(s) 243
BsmFI GGGAC 2 cut(s) 879, 1255
BsnI GGCC 2 cut(s) 674, 1034
BsoBI CYCGRG 2 cut(s) 414, 862
Bsp1286I GDGCHC 3 cut(s) 308, 495, 990
Bsp143I GATC 3 cut(s) 174, 484, 531
Bsp19I CCATGG 1 cut(s) 669
BspACI CCGC 4 cut(s) 5, 40, 150, 1080
BspANI GGCC 2 cut(s) 674, 1034
BspCNI CTCAG 4 cut(s) 145, 243, 520, 1126
BspHI TCATGA 1 cut(s) 1054
BspMI ACCTGC 1 cut(s) 405
BsrBI CCGCTC 1 cut(s) 42
BsrI ACTGG 2 cut(s) 649, 685
BssECI CCNNGG 2 cut(s) 378, 669
BssMI GATC 3 cut(s) 174, 484, 531
BssT1I CCWWGG 1 cut(s) 669
Bst2UI CCWGG 3 cut(s) 639, 972, 1046
Bst4CI ACNGT 2 cut(s) 802, 1012
Bst6I CTCTTC 1 cut(s) 1142
BstC8I GCNNGC 1 cut(s) 1219
BstDEI CTNAG 5 cut(s) 153, 230, 428, 528, 1134
BstDSI CCRYGG 1 cut(s) 669
BstEII GGTNACC 1 cut(s) 1114
BstF5I GGATG 3 cut(s) 24, 988, 1240
BstH2I RGCGCY 1 cut(s) 1297
BstHHI GCGC 3 cut(s) 905, 1107, 1296
BstKTI GATC 3 cut(s) 177, 487, 534
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 3 cut(s) 174, 484, 531
BstMWI GCNNNNNNNGC 3 cut(s) 671, 1130, 1166
BstNI CCWGG 3 cut(s) 639, 972, 1046
BstPI GGTNACC 1 cut(s) 1114
BstSCI CCNGG 5 cut(s) 214, 637, 816, 970, 1044
BstSFI CTRYAG 1 cut(s) 519
BstSLI GKGCMC 2 cut(s) 308, 990
BstV1I GCAGC 3 cut(s) 677, 887, 1147
BstV2I GAAGAC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BsuRI GGCC 2 cut(s) 674, 1034
BtgI CCRYGG 1 cut(s) 669
BtgZI GCGATG 1 cut(s) 1055
BtsCI GGATG 3 cut(s) 24, 988, 1240
BtsIMutI CAGTG 4 cut(s) 284, 306, 798, 1008
BveI ACCTGC 1 cut(s) 405
Cac8I GCNNGC 1 cut(s) 1219
CciI TCATGA 1 cut(s) 1054
CfoI GCGC 3 cut(s) 905, 1107, 1296
Cfr13I GGNCC 3 cut(s) 7, 445, 632
CseI GACGC 2 cut(s) 182, 956
CsiI ACCWGGT 1 cut(s) 637
Csp6I GTAC 5 cut(s) 52, 160, 394, 642, 1227
CviAII CATG 5 cut(s) 16, 127, 262, 670, 1055
CviQI GTAC 5 cut(s) 52, 160, 394, 642, 1227
DdeI CTNAG 5 cut(s) 153, 230, 428, 528, 1134
DpnI GATC 3 cut(s) 176, 486, 533
DpnII GATC 3 cut(s) 174, 484, 531
EaeI YGGCCR 1 cut(s) 672
Eam1104I CTCTTC 1 cut(s) 1142
EarI CTCTTC 1 cut(s) 1142
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 669
Eco47I GGWCC 3 cut(s) 7, 445, 632
Eco57I CTGAAG 3 cut(s) 308, 330, 470
Eco88I CYCGRG 2 cut(s) 414, 862
Eco91I GGTNACC 1 cut(s) 1114
EcoO109I RGGNCCY 1 cut(s) 445
EcoO65I GGTNACC 1 cut(s) 1114
EcoRII CCWGG 3 cut(s) 637, 970, 1044
EcoT14I CCWWGG 1 cut(s) 669
ErhI CCWWGG 1 cut(s) 669
Esp3I CGTCTC 1 cut(s) 243
FaeI CATG 5 cut(s) 19, 130, 265, 673, 1058
FaqI GGGAC 2 cut(s) 879, 1255
FatI CATG 5 cut(s) 15, 126, 261, 669, 1054
FauNDI CATATG 1 cut(s) 996
FblI GTMKAC 1 cut(s) 755
Fnu4HI GCNGC 3 cut(s) 666, 901, 1161
FokI GGATG 3 cut(s) 11, 995, 1247
Fsp4HI GCNGC 3 cut(s) 666, 901, 1161
FspBI CTAG 1 cut(s) 950
GlaI GCGC 3 cut(s) 904, 1106, 1295
GluI GCNGC 3 cut(s) 666, 901, 1161
GsuI CTGGAG 1 cut(s) 668
HaeII RGCGCY 1 cut(s) 1297
HaeIII GGCC 2 cut(s) 674, 1034
HapII CCGG 2 cut(s) 216, 817
HgaI GACGC 2 cut(s) 182, 956
HhaI GCGC 3 cut(s) 905, 1107, 1296
Hin1II CATG 5 cut(s) 19, 130, 265, 673, 1058
Hin6I GCGC 3 cut(s) 903, 1105, 1294
HinP1I GCGC 3 cut(s) 903, 1105, 1294
HindIII AAGCTT 2 cut(s) 452, 655
HinfI GANTC 3 cut(s) 146, 389, 1179
HpaII CCGG 2 cut(s) 216, 817
HphI GGTGA 3 cut(s) 338, 394, 1126
Hpy166II GTNNAC 8 cut(s) 109, 160, 306, 635, 756, 836, 927, 988
Hpy188I TCNGA 5 cut(s) 91, 463, 472, 733, 844
Hpy8I GTNNAC 8 cut(s) 109, 160, 306, 635, 756, 836, 927, 988
HpyAV CCTTC 6 cut(s) 507, 571, 586, 1085, 1169, 1232
HpyCH4III ACNGT 2 cut(s) 802, 1012
HpyCH4V TGCA 8 cut(s) 306, 425, 665, 798, 959, 988, 1008, 1282
HpyF10VI GCNNNNNNNGC 3 cut(s) 671, 1130, 1166
HpyF3I CTNAG 5 cut(s) 153, 230, 428, 528, 1134
Hsp92II CATG 5 cut(s) 19, 130, 265, 673, 1058
HspAI GCGC 3 cut(s) 903, 1105, 1294
Kzo9I GATC 3 cut(s) 174, 484, 531
LmnI GCTCC 2 cut(s) 706, 1138
Lsp1109I GCAGC 3 cut(s) 677, 887, 1147
LweI GCATC 3 cut(s) 412, 1147, 1269
MabI ACCWGGT 1 cut(s) 637
MaeI CTAG 1 cut(s) 950
MaeIII GTNAC 3 cut(s) 18, 326, 1114
MalI GATC 3 cut(s) 176, 486, 533
MbiI CCGCTC 1 cut(s) 42
MboI GATC 3 cut(s) 174, 484, 531
MboII GAAGA 8 cut(s) 188, 266, 376, 563, 797, 833, 924, 1159
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 3 cut(s) 308, 495, 990
MlsI TGGCCA 1 cut(s) 674
MluCI AATT 9 cut(s) 344, 466, 475, 676, 915, 1086, 1186, 1259, 1272
MluNI TGGCCA 1 cut(s) 674
MlyI GAGTC 2 cut(s) 383, 1173
Mox20I TGGCCA 1 cut(s) 674
MscI TGGCCA 1 cut(s) 674
MseI TTAA 1 cut(s) 1275
MslI CAYNNNNRTG 3 cut(s) 289, 995, 1112
Msp20I TGGCCA 1 cut(s) 674
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 2 cut(s) 216, 817
MspR9I CCNGG 5 cut(s) 216, 639, 818, 972, 1046
MvaI CCWGG 3 cut(s) 639, 972, 1046
MwoI GCNNNNNNNGC 3 cut(s) 671, 1130, 1166
NciI CCSGG 2 cut(s) 216, 818
NcoI CCATGG 1 cut(s) 669
NdeI CATATG 1 cut(s) 996
NdeII GATC 3 cut(s) 174, 484, 531
NlaIII CATG 5 cut(s) 19, 130, 265, 673, 1058
NmeAIII GCCGAG 1 cut(s) 1150
NmuCI GTSAC 3 cut(s) 18, 326, 1114
OliI CACNNNNGTG 1 cut(s) 289
PagI TCATGA 1 cut(s) 1054
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 3 cut(s) 667, 902, 1162
PleI GAGTC 2 cut(s) 383, 1173
PpsI GAGTC 2 cut(s) 383, 1173
PpuMI RGGWCCY 1 cut(s) 445
PsiI TTATAA 1 cut(s) 588
Psp5II RGGWCCY 1 cut(s) 445
Psp6I CCWGG 3 cut(s) 637, 970, 1044
PspEI GGTNACC 1 cut(s) 1114
PspGI CCWGG 3 cut(s) 637, 970, 1044
PspPI GGNCC 3 cut(s) 7, 445, 632
PspPPI RGGWCCY 1 cut(s) 445
PsuI RGATCY 1 cut(s) 484
RsaI GTAC 5 cut(s) 53, 161, 395, 643, 1228
RsaNI GTAC 5 cut(s) 52, 160, 394, 642, 1227
RseI CAYNNNNRTG 3 cut(s) 289, 995, 1112
SaqAI TTAA 1 cut(s) 1275
SatI GCNGC 3 cut(s) 666, 901, 1161
Sau3AI GATC 3 cut(s) 174, 484, 531
Sau96I GGNCC 3 cut(s) 7, 445, 632
SchI GAGTC 2 cut(s) 383, 1173
ScrFI CCNGG 5 cut(s) 216, 639, 818, 972, 1046
SduI GDGCHC 3 cut(s) 308, 495, 990
SexAI ACCWGGT 1 cut(s) 637
SfaNI GCATC 3 cut(s) 412, 1147, 1269
SfcI CTRYAG 1 cut(s) 519
SinI GGWCC 3 cut(s) 7, 445, 632
SmiMI CAYNNNNRTG 3 cut(s) 289, 995, 1112
SmlI CTYRAG 3 cut(s) 164, 488, 568
SmoI CTYRAG 3 cut(s) 164, 488, 568
Sse9I AATT 9 cut(s) 344, 466, 475, 676, 915, 1086, 1186, 1259, 1272
SsiI CCGC 4 cut(s) 5, 40, 150, 1080
SspMI CTAG 1 cut(s) 950
StyD4I CCNGG 5 cut(s) 214, 637, 816, 970, 1044
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 2 cut(s) 802, 1012
TaqI TCGA 7 cut(s) 199, 243, 507, 549, 713, 743, 976
TaqII GACCGA 1 cut(s) 392
TasI AATT 9 cut(s) 344, 466, 475, 676, 915, 1086, 1186, 1259, 1272
TatI WGTACW 2 cut(s) 51, 1226
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 1275
Tru9I TTAA 1 cut(s) 1275
TscAI CASTG 4 cut(s) 291, 313, 805, 1015
TseFI GTSAC 3 cut(s) 18, 326, 1114
TseI GCWGC 3 cut(s) 665, 900, 1160
Tsp45I GTSAC 3 cut(s) 18, 326, 1114
TspDTI ATGAA 6 cut(s) 159, 868, 983, 1043, 1160, 1251
TspRI CASTG 4 cut(s) 291, 313, 805, 1015
VneI GTGCAC 2 cut(s) 304, 986
VpaK11BI GGWCC 3 cut(s) 7, 445, 632
XapI RAATTY 2 cut(s) 344, 466
XmiI GTMKAC 1 cut(s) 755
XspI CTAG 1 cut(s) 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.