FvH4_1g12700

Domain associated at C-terminal with AAA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000471
Physical Location & Seq
Forward (+)
6975114 .. 6977107
1994 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12700.t1

Sequence Viewer

Length: 1401 bp
ATGTATCCTTTCGATTTCAAAGACATGCCTACCTCGGCTTCTTCCTTGTTTTCTGCCTATGCCTCATTGGCTGCATTCATCATGTTGGTTCGCTCCATGGTAGACCAACTCATCCCTCATGAGTTGCGTTCATATATTTACTCGTTCATCCACCGATTCTTCTACACCCCTCGATGTTTGGACATGACAGTCATCATTGATGAGAAGTGTGGCTACATCAACAATGAAGTTTATGACGCAGCGGAAGTTTACCTCCAGACCAAGATTAGTGATTCGAATGAGCGTCTCCGAGTGACCAAAACACCAGGGCAGAAGAGTCTCAACGTTGTTGTTGACAAAGACCAAGAAATCATAGATTTCTATAATGGCATTAAGCTAAGCTGGCGTTTTGTGTGCGCTGAAGACAAGGATAGTGGTTCTCGTGATGATGAAAAGCGTCGGTTTGAGCTGATTTTTCACAAGAAGCACAGGACCAAGGTGATAGACTCGTACTTGTCACATGTGTTGGCTCGGGCTAATGCAATTAGAGAAGAGGAAAAGGTTCTCAAGCTTGATTCTCAGCGTTCCGGTTCAGTAGATTTGGAGCACCCTTCAACTTTCGACACATTGGCTATGGACCCCGAGCTTAAGAAGACGATTATTGAGGATTTGGATAGGTTTGTGAGGAGGAAGGAGTTCTATAGGAAGGTTGGCAAGGCTTGGAAAAGAGGGTATTTGTTGTATGGTCCACCTGGTACTGGCAAATCAAGCTTGATTGCAGCCATGGCTAACTATCTCAAGTTTGATGTGTATGATTTGGAGCTTACTAGTGTATATGACAACTCGGAATTGAGGAGGATATTGTTGTCTACTTCGAATCGTTCTATTTTGGTCATTGAGGATATTGATTGCAGCGTGGACATACAAAACAGGGAATCTGAGGAGGAAAACAATGAACAATCTAACACCAGGGTAACGCTCTCGGGCTTATTGAACTTCATAGATGGTCTGTGGTCGAGCTGTGGTGATGAGAGGATTATTGTGTTCACCACCAACAACAAGGATAAATTAGACCCTGCATTGTTGCGTCCTGGTCGAATGGATGTGCACATTCACATGTCGTATTGCACCCCGAGAGGGTTCAGGGTCTTAGCCTCTAACTACCTTGGTATTCATGAAAGCAACCCTCATCGCCTTTGTGGAGAAATTGAAGGTTTGATAGGAAGTTCTGAGGTTACCCCTGCTGAAATTGCTGAGGAGCTTATGAAGAGTGATGATGTTGATGCTGCTCTTGAAGGACTTGTCAATTTCCTCAAAAGAAAGAAATCCGACAGAAGTAAAATAAACGATGAAGGGAGTCAGGGGACTAACAACATTGAAACTGAAGAAAGAAATGAAGATGTAGAGAGAAAACAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

467

Amino Acids

53.49

Weight (kDa)

5.43

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 38 - 132 3e-23 Domain associated at C-terminal with AAA
AAA PF00004 238 - 367 6.1e-22 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 369 - 437 5e-21 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18190 AT2G18193
fragaria_vesca FvH4_1g12130 FvH4_1g12690 FvH4_1g12700 FvH4_1g12712 FvH4_1g12716 FvH4_1g12731
malus_domestica MD02G1141300.v1.1 MD02G1141400.v1.1 MD02G1141600.v1.1 MD02G1141800.v1.1 MD02G1142200.v1.1 MD15G1254200.v1.1
prunus_persica Prupe.7G159500_v2.0.a1 Prupe.7G159600_v2.0.a1 Prupe.7G165500_v2.0.a1
pyrus_communis pycom02g11130 pycom02g11150 pycom02g11160 pycom02g11180 pycom15g22350
rosa_chinensis RchiOBHm_Chr2g0099791 RchiOBHm_Chr2g0099801 RchiOBHm_Chr2g0100651 RchiOBHm_Chr2g0100681 RchiOBHm_Chr2g0100691 RchiOBHm_Chr2g0100701 RchiOBHm_Chr2g0100721 RchiOBHm_Chr2g0100801 RchiOBHm_Chr3g0459141
rosa_laevigata RLG00000016914 RLG00000016915 RLG00000016997 RLG00000016998 RLG00000017000 RLG00000017002 RLG00000017012 RLG00000025114
rosa_multiflora Rmu_co8416275.1_g000001 Rmu_sc0001187.1_g000004 Rmu_sc0001497.1_g000006 Rmu_sc0001659.1_g000004 Rmu_sc0001659.1_g000006 Rmu_sc0001659.1_g000008 Rmu_sc0001659.1_g000010 Rmu_sc0008864.1_g000008 Rmu_sc0028022.1_g000001
rosa_roxburghii Rroxscaffold_2G00141850 Rroxscaffold_2G00141930 Rroxscaffold_2G00141940 Rroxscaffold_2G00141950 Rroxscaffold_2G00141960 Rroxscaffold_2G00141970
rosa_rugosa Rorug02G0091800 Rorug02G0091800 Rorug02G0091800 Rorug02G0091900 Rorug02G0092900 Rorug03G0033500
rosa_samantha Rh2BG135600 Rh2BG143900 Rh2BG144000 Rh2BG144200 Rh2BG144300 Rh2BG144400 Rh2BG144500 Rh2BG145500 Rh2CG136900 Rh2CG137000 Rh2CG144800 Rh2CG145000 Rh2CG145100 Rh2CG145200 Rh2CG145500 Rh2CG146400 Rh2DG137400 Rh2DG137500 Rh2DG144300 Rh2DG144500 Rh2DG144600 Rh2DG144700 Rh2DG145000 Rh2DG145900 Rh3BG094700 Rh3DG095300
rosa_wichuraiana Rw2G010920 Rw2G010950 Rw2G010990 Rw3G007860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
AccI GTMKAC 2 cut(s) 102, 848
AciI CCGC 1 cut(s) 242
AclI AACGTT 1 cut(s) 324
AcuI CTGAAG 2 cut(s) 420, 1383
AfaI GTAC 2 cut(s) 491, 736
AfiI CCNNNNNNNGG 2 cut(s) 737, 1116
AflII CTTAAG 1 cut(s) 626
AflIII ACRYGT 2 cut(s) 499, 1095
AgsI TTSAA 6 cut(s) 19, 594, 973, 1190, 1274, 1358
AhlI ACTAGT 1 cut(s) 806
AjnI CCWGG 4 cut(s) 304, 730, 947, 1069
AluBI AGCT 9 cut(s) 376, 381, 448, 550, 625, 750, 802, 999, 1240
AluI AGCT 9 cut(s) 376, 381, 448, 550, 625, 750, 802, 999, 1240
Alw21I GWGCWC 2 cut(s) 588, 1089
Alw26I GTCTC 2 cut(s) 290, 323
Alw44I GTGCAC 1 cut(s) 1085
Ama87I CYCGRG 4 cut(s) 510, 620, 961, 1111
ApaLI GTGCAC 1 cut(s) 1085
ApeKI GCWGC 5 cut(s) 71, 239, 758, 891, 1265
Asp700I GAANNNNTTC 2 cut(s) 540, 674
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 3 cut(s) 471, 616, 725
AsuHPI GGTGA 3 cut(s) 490, 1016, 1018
AsuII TTCGAA 2 cut(s) 275, 854
AvaI CYCGRG 4 cut(s) 510, 620, 961, 1111
AvaII GGWCC 3 cut(s) 471, 616, 725
BaeGI GKGCMC 1 cut(s) 1089
BarI GAAGNNNNNNTAC 2 cut(s) 197, 229
BauI CACGAG 1 cut(s) 420
BbsI GAAGAC 2 cut(s) 408, 638
Bbv12I GWGCWC 2 cut(s) 588, 1089
BbvCI CCTCAGC 1 cut(s) 1233
BbvI GCAGC 5 cut(s) 58, 251, 770, 903, 1252
BccI CCATC 1 cut(s) 977
BciT130I CCWGG 4 cut(s) 306, 732, 949, 1071
BciVI GTATCC 1 cut(s) 15
BcoDI GTCTC 2 cut(s) 290, 323
BcuI ACTAGT 1 cut(s) 806
BfaI CTAG 1 cut(s) 807
BfmI CTRYAG 1 cut(s) 679
BfrI CTTAAG 1 cut(s) 626
BfuI GTATCC 1 cut(s) 15
BglI GCCNNNNNGGC 1 cut(s) 68
BisI GCNGC 5 cut(s) 72, 240, 759, 892, 1266
BlpI GCTNAGC 1 cut(s) 377
BlsI GCNGC 5 cut(s) 73, 241, 760, 893, 1267
Bme1390I CCNGG 4 cut(s) 306, 732, 949, 1071
Bme18I GGWCC 3 cut(s) 471, 616, 725
BmeT110I CYCGRG 4 cut(s) 510, 620, 961, 1111
BmgT120I GGNCC 3 cut(s) 471, 616, 725
BmiI GGNNCC 1 cut(s) 618
BmrFI CCNGG 4 cut(s) 306, 732, 949, 1071
BmsI GCATC 1 cut(s) 1252
BpiI GAAGAC 2 cut(s) 408, 638
BpmI CTGGAG 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 1233
Bpu1102I GCTNAGC 1 cut(s) 377
Bpu14I TTCGAA 2 cut(s) 275, 854
BpuEI CTTGAG 2 cut(s) 530, 761
BsaJI CCNNGG 7 cut(s) 33, 96, 305, 474, 762, 948, 1144
BsaWI WCCGGW 1 cut(s) 566
Bsc4I CCNNNNNNNGG 2 cut(s) 737, 1116
Bse1I ACTGG 1 cut(s) 742
BseBI CCWGG 4 cut(s) 306, 732, 949, 1071
BseDI CCNNGG 7 cut(s) 33, 96, 305, 474, 762, 948, 1144
BseGI GGATG 3 cut(s) 111, 147, 1087
BseLI CCNNNNNNNGG 2 cut(s) 737, 1116
BseMII CTCAG 4 cut(s) 572, 909, 1200, 1224
BseNI ACTGG 1 cut(s) 742
BseRI GAGGAG 4 cut(s) 679, 847, 935, 1250
BseSI GKGCMC 1 cut(s) 1089
BseXI GCAGC 5 cut(s) 58, 251, 770, 903, 1252
BsiHKAI GWGCWC 2 cut(s) 588, 1089
BsiHKCI CYCGRG 4 cut(s) 510, 620, 961, 1111
BsiSI CCGG 1 cut(s) 567
BslFI GGGAC 1 cut(s) 1357
BslI CCNNNNNNNGG 2 cut(s) 737, 1116
BsmAI GTCTC 2 cut(s) 290, 323
BsmBI CGTCTC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 1357
BsmI GAATGC 1 cut(s) 74
BsoBI CYCGRG 4 cut(s) 510, 620, 961, 1111
Bsp119I TTCGAA 2 cut(s) 275, 854
Bsp1286I GDGCHC 2 cut(s) 588, 1089
Bsp1720I GCTNAGC 1 cut(s) 377
Bsp19I CCATGG 2 cut(s) 96, 762
BspACI CCGC 1 cut(s) 242
BspCNI CTCAG 4 cut(s) 571, 910, 1201, 1225
BspHI TCATGA 2 cut(s) 118, 1153
BspLI GGNNCC 1 cut(s) 618
BspT104I TTCGAA 2 cut(s) 275, 854
BspTI CTTAAG 1 cut(s) 626
BsrI ACTGG 1 cut(s) 742
BssECI CCNNGG 7 cut(s) 33, 96, 305, 474, 762, 948, 1144
BssSI CACGAG 1 cut(s) 420
BssT1I CCWWGG 4 cut(s) 96, 474, 762, 1144
Bst2BI CACGAG 1 cut(s) 420
Bst2UI CCWGG 4 cut(s) 306, 732, 949, 1071
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 3 cut(s) 308, 525, 1241
BstAFI CTTAAG 1 cut(s) 626
BstBI TTCGAA 2 cut(s) 275, 854
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 6 cut(s) 377, 558, 918, 1129, 1209, 1233
BstDSI CCRYGG 2 cut(s) 96, 762
BstEII GGTNACC 1 cut(s) 1213
BstF5I GGATG 3 cut(s) 111, 147, 1087
BstHHI GCGC 1 cut(s) 398
BstMAI GTCTC 2 cut(s) 290, 323
BstMWI GCNNNNNNNGC 5 cut(s) 68, 382, 747, 764, 1229
BstNI CCWGG 4 cut(s) 306, 732, 949, 1071
BstNSI RCATGY 3 cut(s) 28, 503, 1099
BstPI GGTNACC 1 cut(s) 1213
BstSCI CCNGG 4 cut(s) 304, 730, 947, 1069
BstSFI CTRYAG 1 cut(s) 679
BstSLI GKGCMC 1 cut(s) 1089
BstV1I GCAGC 5 cut(s) 58, 251, 770, 903, 1252
BstV2I GAAGAC 2 cut(s) 408, 638
BsuI GTATCC 1 cut(s) 15
BtgI CCRYGG 2 cut(s) 96, 762
BtgZI GCGATG 1 cut(s) 1154
BtsCI GGATG 3 cut(s) 111, 147, 1087
Cac8I GCNNGC 1 cut(s) 383
CciI TCATGA 2 cut(s) 118, 1153
CfoI GCGC 1 cut(s) 398
Cfr13I GGNCC 3 cut(s) 471, 616, 725
CseI GACGC 4 cut(s) 245, 272, 425, 1055
CsiI ACCWGGT 1 cut(s) 730
Csp6I GTAC 2 cut(s) 490, 735
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviAII CATG 9 cut(s) 25, 82, 97, 119, 184, 500, 763, 1096, 1154
CviQI GTAC 2 cut(s) 490, 735
DdeI CTNAG 6 cut(s) 377, 558, 918, 1129, 1209, 1233
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
Eam1104I CTCTTC 3 cut(s) 308, 525, 1241
EarI CTCTTC 3 cut(s) 308, 525, 1241
Eco130I CCWWGG 4 cut(s) 96, 474, 762, 1144
Eco47I GGWCC 3 cut(s) 471, 616, 725
Eco57I CTGAAG 2 cut(s) 420, 1383
Eco88I CYCGRG 4 cut(s) 510, 620, 961, 1111
Eco91I GGTNACC 1 cut(s) 1213
EcoO65I GGTNACC 1 cut(s) 1213
EcoRII CCWGG 4 cut(s) 304, 730, 947, 1069
EcoT14I CCWWGG 4 cut(s) 96, 474, 762, 1144
ErhI CCWWGG 4 cut(s) 96, 474, 762, 1144
Esp3I CGTCTC 1 cut(s) 290
FaeI CATG 9 cut(s) 28, 85, 100, 122, 187, 503, 766, 1099, 1157
FaqI GGGAC 1 cut(s) 1357
FatI CATG 9 cut(s) 24, 81, 96, 118, 183, 499, 762, 1095, 1153
FblI GTMKAC 2 cut(s) 102, 848
Fnu4HI GCNGC 5 cut(s) 72, 240, 759, 892, 1266
FokI GGATG 3 cut(s) 98, 134, 1094
Fsp4HI GCNGC 5 cut(s) 72, 240, 759, 892, 1266
FspBI CTAG 1 cut(s) 807
GlaI GCGC 1 cut(s) 397
GluI GCNGC 5 cut(s) 72, 240, 759, 892, 1266
GsuI CTGGAG 1 cut(s) 239
HapII CCGG 1 cut(s) 567
HgaI GACGC 4 cut(s) 245, 272, 425, 1055
HhaI GCGC 1 cut(s) 398
Hin1II CATG 9 cut(s) 28, 85, 100, 122, 187, 503, 766, 1099, 1157
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 2 cut(s) 548, 748
HinfI GANTC 8 cut(s) 156, 272, 316, 485, 554, 856, 914, 1336
HpaII CCGG 1 cut(s) 567
HphI GGTGA 3 cut(s) 490, 1016, 1018
Hpy166II GTNNAC 8 cut(s) 103, 250, 334, 728, 849, 898, 1026, 1087
Hpy188I TCNGA 5 cut(s) 290, 826, 919, 1210, 1309
Hpy188III TCNNGA 5 cut(s) 119, 256, 422, 1154, 1271
Hpy8I GTNNAC 8 cut(s) 103, 250, 334, 728, 849, 898, 1026, 1087
Hpy99I CGWCG 1 cut(s) 441
HpyAV CCTTC 6 cut(s) 600, 664, 679, 1184, 1268, 1325
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 7 cut(s) 74, 521, 758, 891, 1058, 1087, 1107
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 382, 747, 764, 1229
HpyF3I CTNAG 6 cut(s) 377, 558, 918, 1129, 1209, 1233
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 9 cut(s) 28, 85, 100, 122, 187, 503, 766, 1099, 1157
HspAI GCGC 1 cut(s) 396
LmnI GCTCC 4 cut(s) 98, 583, 799, 1237
Lsp1109I GCAGC 5 cut(s) 58, 251, 770, 903, 1252
LweI GCATC 1 cut(s) 1252
MabI ACCWGGT 1 cut(s) 730
MaeI CTAG 1 cut(s) 807
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 4 cut(s) 292, 495, 952, 1213
MboII GAAGA 9 cut(s) 33, 151, 325, 413, 542, 643, 1258, 1376, 1388
MhlI GDGCHC 2 cut(s) 588, 1089
MluCI AATT 6 cut(s) 522, 827, 1046, 1185, 1227, 1285
MlyI GAGTC 3 cut(s) 325, 479, 1345
MmeI TCCRAC 1 cut(s) 1332
MroXI GAANNNNTTC 2 cut(s) 540, 674
MseI TTAA 2 cut(s) 372, 627
MslI CAYNNNNRTG 1 cut(s) 1094
MspA1I CMGCKG 1 cut(s) 242
MspCI CTTAAG 1 cut(s) 626
MspI CCGG 1 cut(s) 567
MspR9I CCNGG 4 cut(s) 306, 732, 949, 1071
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 4 cut(s) 306, 732, 949, 1071
MwoI GCNNNNNNNGC 5 cut(s) 68, 382, 747, 764, 1229
NcoI CCATGG 2 cut(s) 96, 762
NlaIII CATG 9 cut(s) 28, 85, 100, 122, 187, 503, 766, 1099, 1157
NlaIV GGNNCC 1 cut(s) 618
NmeAIII GCCGAG 1 cut(s) 14
NmuCI GTSAC 2 cut(s) 292, 495
NspI RCATGY 3 cut(s) 28, 503, 1099
NspV TTCGAA 2 cut(s) 275, 854
PagI TCATGA 2 cut(s) 118, 1153
PciI ACATGT 2 cut(s) 499, 1095
PctI GAATGC 1 cut(s) 74
PdmI GAANNNNTTC 2 cut(s) 540, 674
PfeI GAWTC 5 cut(s) 156, 272, 554, 856, 914
PkrI GCNGC 5 cut(s) 73, 241, 760, 893, 1267
PleI GAGTC 3 cut(s) 324, 479, 1344
PpsI GAGTC 3 cut(s) 324, 479, 1344
PscI ACATGT 2 cut(s) 499, 1095
Psp1406I AACGTT 1 cut(s) 324
Psp6I CCWGG 4 cut(s) 304, 730, 947, 1069
PspEI GGTNACC 1 cut(s) 1213
PspGI CCWGG 4 cut(s) 304, 730, 947, 1069
PspN4I GGNNCC 1 cut(s) 618
PspPI GGNCC 3 cut(s) 471, 616, 725
RsaI GTAC 2 cut(s) 491, 736
RsaNI GTAC 2 cut(s) 490, 735
RseI CAYNNNNRTG 1 cut(s) 1094
SaqAI TTAA 2 cut(s) 372, 627
SatI GCNGC 5 cut(s) 72, 240, 759, 892, 1266
Sau96I GGNCC 3 cut(s) 471, 616, 725
SchI GAGTC 3 cut(s) 325, 479, 1345
ScrFI CCNGG 4 cut(s) 306, 732, 949, 1071
SduI GDGCHC 2 cut(s) 588, 1089
SexAI ACCWGGT 1 cut(s) 730
SfaNI GCATC 1 cut(s) 1252
SfcI CTRYAG 1 cut(s) 679
SfuI TTCGAA 2 cut(s) 275, 854
SinI GGWCC 3 cut(s) 471, 616, 725
SmiMI CAYNNNNRTG 1 cut(s) 1094
SmlI CTYRAG 3 cut(s) 545, 626, 776
SmoI CTYRAG 3 cut(s) 545, 626, 776
SpeI ACTAGT 1 cut(s) 806
Sse9I AATT 6 cut(s) 522, 827, 1046, 1185, 1227, 1285
SsiI CCGC 1 cut(s) 242
SspMI CTAG 1 cut(s) 807
StyD4I CCNGG 4 cut(s) 304, 730, 947, 1069
StyI CCWWGG 4 cut(s) 96, 474, 762, 1144
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 327
TaqI TCGA 7 cut(s) 12, 172, 275, 600, 854, 995, 1075
TasI AATT 6 cut(s) 522, 827, 1046, 1185, 1227, 1285
TfiI GAWTC 5 cut(s) 156, 272, 554, 856, 914
Tru1I TTAA 2 cut(s) 372, 627
Tru9I TTAA 2 cut(s) 372, 627
TseFI GTSAC 2 cut(s) 292, 495
TseI GCWGC 5 cut(s) 71, 239, 758, 891, 1265
Tsp45I GTSAC 2 cut(s) 292, 495
Vha464I CTTAAG 1 cut(s) 626
VneI GTGCAC 1 cut(s) 1085
VpaK11BI GGWCC 3 cut(s) 471, 616, 725
XceI RCATGY 3 cut(s) 28, 503, 1099
XmiI GTMKAC 2 cut(s) 102, 848
XmnI GAANNNNTTC 2 cut(s) 540, 674
XspI CTAG 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.