Domain associated at C-terminal with AAA
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 29, 837 |
| AclWI | GGATC | 5 cut(s) | 449, 462, 758, 771, 885 |
| AfaI | GTAC | 3 cut(s) | 212, 574, 1102 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 364, 575, 1060 |
| AflIII | ACRYGT | 1 cut(s) | 930 |
| AgsI | TTSAA | 3 cut(s) | 169, 326, 396 |
| AjiI | CACGTC | 1 cut(s) | 755 |
| AjnI | CCWGG | 2 cut(s) | 92, 568 |
| AluBI | AGCT | 7 cut(s) | 247, 314, 463, 588, 640, 834, 1075 |
| AluI | AGCT | 7 cut(s) | 247, 314, 463, 588, 640, 834, 1075 |
| Alw21I | GWGCWC | 3 cut(s) | 924, 1043, 1077 |
| Alw44I | GTGCAC | 1 cut(s) | 920 |
| AlwI | GGATC | 5 cut(s) | 449, 462, 758, 771, 885 |
| Ama87I | CYCGRG | 2 cut(s) | 309, 357 |
| AoxI | GGCC | 1 cut(s) | 799 |
| ApaLI | GTGCAC | 1 cut(s) | 920 |
| ApeKI | GCWGC | 5 cut(s) | 26, 596, 729, 834, 898 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1103, 1135 |
| AspA2I | CCTAGG | 1 cut(s) | 979 |
| AspLEI | GCGC | 2 cut(s) | 177, 734 |
| AspS9I | GGNCC | 1 cut(s) | 563 |
| AsuC2I | CCSGG | 3 cut(s) | 358, 359, 906 |
| AsuHPI | GGTGA | 7 cut(s) | 130, 172, 289, 380, 721, 998, 1042 |
| AvaI | CYCGRG | 2 cut(s) | 309, 357 |
| AvaII | GGWCC | 1 cut(s) | 563 |
| AvrII | CCTAGG | 1 cut(s) | 979 |
| BaeGI | GKGCMC | 1 cut(s) | 924 |
| BamHI | GGATCC | 2 cut(s) | 454, 763 |
| BanII | GRGCYC | 1 cut(s) | 1077 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 194, 226 |
| Bbv12I | GWGCWC | 3 cut(s) | 924, 1043, 1077 |
| BbvCI | CCTCAGC | 1 cut(s) | 1068 |
| BbvI | GCAGC | 5 cut(s) | 13, 608, 716, 821, 885 |
| BccI | CCATC | 5 cut(s) | 274, 412, 436, 445, 812 |
| BciT130I | CCWGG | 2 cut(s) | 94, 570 |
| BcnI | CCSGG | 3 cut(s) | 358, 359, 906 |
| BfaI | CTAG | 2 cut(s) | 248, 980 |
| BfmI | CTRYAG | 1 cut(s) | 1056 |
| BfoI | RGCGCY | 1 cut(s) | 178 |
| BisI | GCNGC | 5 cut(s) | 27, 597, 730, 835, 899 |
| BlnI | CCTAGG | 1 cut(s) | 979 |
| BlsI | GCNGC | 5 cut(s) | 28, 598, 731, 836, 900 |
| Bme1390I | CCNGG | 5 cut(s) | 94, 358, 359, 570, 906 |
| Bme18I | GGWCC | 1 cut(s) | 563 |
| BmeT110I | CYCGRG | 2 cut(s) | 309, 357 |
| BmgBI | CACGTC | 1 cut(s) | 755 |
| BmgT120I | GGNCC | 1 cut(s) | 563 |
| BmiI | GGNNCC | 3 cut(s) | 409, 456, 765 |
| BmrFI | CCNGG | 5 cut(s) | 94, 358, 359, 570, 906 |
| BmsI | GCATC | 3 cut(s) | 13, 433, 1081 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 200, 232 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1068 |
| BpuEI | CTTGAG | 3 cut(s) | 59, 599, 1114 |
| BpuMI | CCSGG | 3 cut(s) | 358, 359, 906 |
| BsaJI | CCNNGG | 6 cut(s) | 92, 117, 357, 358, 600, 979 |
| BsaWI | WCCGGW | 1 cut(s) | 760 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 364, 575, 1060 |
| Bse3DI | GCAATG | 1 cut(s) | 111 |
| BseBI | CCWGG | 2 cut(s) | 94, 570 |
| BseDI | CCNNGG | 6 cut(s) | 92, 117, 357, 358, 600, 979 |
| BseGI | GGATG | 2 cut(s) | 424, 922 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 364, 575, 1060 |
| BseMI | GCAATG | 1 cut(s) | 111 |
| BseMII | CTCAG | 3 cut(s) | 180, 1035, 1059 |
| BseRI | GAGGAG | 4 cut(s) | 517, 520, 685, 1085 |
| BseSI | GKGCMC | 1 cut(s) | 924 |
| BseXI | GCAGC | 5 cut(s) | 13, 608, 716, 821, 885 |
| BsgI | GTGCAG | 2 cut(s) | 761, 876 |
| BshFI | GGCC | 1 cut(s) | 801 |
| BsiHKAI | GWGCWC | 3 cut(s) | 924, 1043, 1077 |
| BsiHKCI | CYCGRG | 2 cut(s) | 309, 357 |
| BsiSI | CCGG | 3 cut(s) | 358, 761, 905 |
| BslFI | GGGAC | 2 cut(s) | 765, 854 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 364, 575, 1060 |
| BsmFI | GGGAC | 2 cut(s) | 765, 854 |
| BsmI | GAATGC | 1 cut(s) | 984 |
| BsnI | GGCC | 1 cut(s) | 801 |
| BsoBI | CYCGRG | 2 cut(s) | 309, 357 |
| Bsp1286I | GDGCHC | 3 cut(s) | 924, 1043, 1077 |
| Bsp143I | GATC | 5 cut(s) | 51, 78, 454, 763, 877 |
| Bsp19I | CCATGG | 2 cut(s) | 117, 600 |
| BspACI | CCGC | 2 cut(s) | 29, 837 |
| BspANI | GGCC | 1 cut(s) | 801 |
| BspCNI | CTCAG | 3 cut(s) | 181, 1036, 1060 |
| BspHI | TCATGA | 2 cut(s) | 988, 1077 |
| BspLI | GGNNCC | 3 cut(s) | 409, 456, 765 |
| BspMAI | CTGCAG | 1 cut(s) | 1060 |
| BspPI | GGATC | 5 cut(s) | 449, 462, 758, 771, 885 |
| BsrDI | GCAATG | 1 cut(s) | 111 |
| BssECI | CCNNGG | 6 cut(s) | 92, 117, 357, 358, 600, 979 |
| BssMI | GATC | 5 cut(s) | 51, 78, 454, 763, 877 |
| BssT1I | CCWWGG | 3 cut(s) | 117, 600, 979 |
| Bst2UI | CCWGG | 2 cut(s) | 94, 570 |
| Bst4CI | ACNGT | 3 cut(s) | 230, 277, 656 |
| Bst6I | CTCTTC | 2 cut(s) | 324, 536 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1064 |
| BstDEI | CTNAG | 4 cut(s) | 189, 964, 1044, 1068 |
| BstDSI | CCRYGG | 2 cut(s) | 117, 600 |
| BstEII | GGTNACC | 1 cut(s) | 1048 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 573 |
| BstF5I | GGATG | 2 cut(s) | 424, 922 |
| BstH2I | RGCGCY | 1 cut(s) | 178 |
| BstHHI | GCGC | 2 cut(s) | 177, 734 |
| BstKTI | GATC | 5 cut(s) | 54, 81, 457, 766, 880 |
| BstMBI | GATC | 5 cut(s) | 51, 78, 454, 763, 877 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 602, 1064 |
| BstNI | CCWGG | 2 cut(s) | 94, 570 |
| BstNSI | RCATGY | 1 cut(s) | 934 |
| BstPI | GGTNACC | 1 cut(s) | 1048 |
| BstSCI | CCNGG | 5 cut(s) | 92, 356, 357, 568, 904 |
| BstSFI | CTRYAG | 1 cut(s) | 1056 |
| BstSLI | GKGCMC | 1 cut(s) | 924 |
| BstV1I | GCAGC | 5 cut(s) | 13, 608, 716, 821, 885 |
| BstX2I | RGATCY | 2 cut(s) | 454, 763 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 418 |
| BstYI | RGATCY | 2 cut(s) | 454, 763 |
| BsuRI | GGCC | 1 cut(s) | 801 |
| BtgI | CCRYGG | 2 cut(s) | 117, 600 |
| BtgZI | GCGATG | 1 cut(s) | 464 |
| BtrI | CACGTC | 1 cut(s) | 755 |
| BtsCI | GGATG | 2 cut(s) | 424, 922 |
| BtsI | GCAGTG | 2 cut(s) | 893, 942 |
| BtsIMutI | CAGTG | 4 cut(s) | 63, 893, 942, 1041 |
| CciI | TCATGA | 2 cut(s) | 988, 1077 |
| CfoI | GCGC | 2 cut(s) | 177, 734 |
| Cfr13I | GGNCC | 1 cut(s) | 563 |
| Cfr9I | CCCGGG | 1 cut(s) | 357 |
| CseI | GACGC | 1 cut(s) | 890 |
| CsiI | ACCWGGT | 1 cut(s) | 568 |
| Csp6I | GTAC | 3 cut(s) | 211, 573, 1101 |
| CviAII | CATG | 6 cut(s) | 118, 601, 913, 931, 989, 1078 |
| CviQI | GTAC | 3 cut(s) | 211, 573, 1101 |
| DdeI | CTNAG | 4 cut(s) | 189, 964, 1044, 1068 |
| DpnI | GATC | 5 cut(s) | 53, 80, 456, 765, 879 |
| DpnII | GATC | 5 cut(s) | 51, 78, 454, 763, 877 |
| Eam1104I | CTCTTC | 2 cut(s) | 324, 536 |
| EarI | CTCTTC | 2 cut(s) | 324, 536 |
| Ecl136II | GAGCTC | 1 cut(s) | 1075 |
| Eco130I | CCWWGG | 3 cut(s) | 117, 600, 979 |
| Eco147I | AGGCCT | 1 cut(s) | 801 |
| Eco24I | GRGCYC | 1 cut(s) | 1077 |
| Eco32I | GATATC | 1 cut(s) | 160 |
| Eco47I | GGWCC | 1 cut(s) | 563 |
| Eco53kI | GAGCTC | 1 cut(s) | 1075 |
| Eco88I | CYCGRG | 2 cut(s) | 309, 357 |
| Eco91I | GGTNACC | 1 cut(s) | 1048 |
| EcoICRI | GAGCTC | 1 cut(s) | 1075 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 573 |
| EcoO65I | GGTNACC | 1 cut(s) | 1048 |
| EcoRII | CCWGG | 2 cut(s) | 92, 568 |
| EcoRV | GATATC | 1 cut(s) | 160 |
| EcoT14I | CCWWGG | 3 cut(s) | 117, 600, 979 |
| EcoT38I | GRGCYC | 1 cut(s) | 1077 |
| ErhI | CCWWGG | 3 cut(s) | 117, 600, 979 |
| FaeI | CATG | 6 cut(s) | 121, 604, 916, 934, 992, 1081 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 161, 193 |
| FaqI | GGGAC | 2 cut(s) | 765, 854 |
| FatI | CATG | 6 cut(s) | 117, 600, 912, 930, 988, 1077 |
| FauI | CCCGC | 1 cut(s) | 830 |
| Fnu4HI | GCNGC | 5 cut(s) | 27, 597, 730, 835, 899 |
| FokI | GGATG | 2 cut(s) | 411, 929 |
| FriOI | GRGCYC | 1 cut(s) | 1077 |
| Fsp4HI | GCNGC | 5 cut(s) | 27, 597, 730, 835, 899 |
| FspBI | CTAG | 2 cut(s) | 248, 980 |
| GlaI | GCGC | 2 cut(s) | 176, 733 |
| GluI | GCNGC | 5 cut(s) | 27, 597, 730, 835, 899 |
| HaeII | RGCGCY | 1 cut(s) | 178 |
| HaeIII | GGCC | 1 cut(s) | 801 |
| HapII | CCGG | 3 cut(s) | 358, 761, 905 |
| HgaI | GACGC | 1 cut(s) | 890 |
| HhaI | GCGC | 2 cut(s) | 177, 734 |
| Hin1II | CATG | 6 cut(s) | 121, 604, 916, 934, 992, 1081 |
| Hin6I | GCGC | 2 cut(s) | 175, 732 |
| HinP1I | GCGC | 2 cut(s) | 175, 732 |
| HincII | GTYRAC | 1 cut(s) | 789 |
| HindII | GTYRAC | 1 cut(s) | 789 |
| HinfI | GANTC | 3 cut(s) | 284, 954, 968 |
| HpaII | CCGG | 3 cut(s) | 358, 761, 905 |
| HphI | GGTGA | 7 cut(s) | 130, 172, 289, 380, 721, 998, 1042 |
| Hpy166II | GTNNAC | 6 cut(s) | 37, 566, 652, 758, 789, 922 |
| Hpy188III | TCNNGA | 7 cut(s) | 76, 326, 458, 989, 1078, 1131, 1146 |
| Hpy8I | GTNNAC | 6 cut(s) | 37, 566, 652, 758, 789, 922 |
| HpyAV | CCTTC | 2 cut(s) | 196, 1134 |
| HpyCH4III | ACNGT | 3 cut(s) | 230, 277, 656 |
| HpyCH4IV | ACGT | 3 cut(s) | 300, 754, 769 |
| HpyCH4V | TGCA | 8 cut(s) | 596, 742, 893, 922, 942, 947, 1014, 1058 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 602, 1064 |
| HpyF3I | CTNAG | 4 cut(s) | 189, 964, 1044, 1068 |
| HpySE526I | ACGT | 3 cut(s) | 300, 754, 769 |
| Hsp92II | CATG | 6 cut(s) | 121, 604, 916, 934, 992, 1081 |
| HspAI | GCGC | 2 cut(s) | 175, 732 |
| Kzo9I | GATC | 5 cut(s) | 51, 78, 454, 763, 877 |
| LmnI | GCTCC | 3 cut(s) | 421, 637, 1072 |
| Lsp1109I | GCAGC | 5 cut(s) | 13, 608, 716, 821, 885 |
| LweI | GCATC | 3 cut(s) | 13, 433, 1081 |
| MabI | ACCWGGT | 1 cut(s) | 568 |
| MaeI | CTAG | 2 cut(s) | 248, 980 |
| MaeII | ACGT | 3 cut(s) | 300, 754, 769 |
| MaeIII | GTNAC | 1 cut(s) | 1048 |
| MalI | GATC | 5 cut(s) | 53, 80, 456, 765, 879 |
| MboI | GATC | 5 cut(s) | 51, 78, 454, 763, 877 |
| MboII | GAAGA | 3 cut(s) | 143, 341, 553 |
| MflI | RGATCY | 2 cut(s) | 454, 763 |
| MhlI | GDGCHC | 3 cut(s) | 924, 1043, 1077 |
| MluCI | AATT | 5 cut(s) | 164, 433, 658, 849, 1122 |
| MlyI | GAGTC | 2 cut(s) | 278, 962 |
| MmeI | TCCRAC | 1 cut(s) | 996 |
| MseI | TTAA | 2 cut(s) | 465, 1023 |
| MslI | CAYNNNNRTG | 5 cut(s) | 116, 278, 416, 917, 929 |
| MspI | CCGG | 3 cut(s) | 358, 761, 905 |
| MspR9I | CCNGG | 5 cut(s) | 94, 358, 359, 570, 906 |
| Mva1269I | GAATGC | 1 cut(s) | 984 |
| MvaI | CCWGG | 2 cut(s) | 94, 570 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 602, 1064 |
| NciI | CCSGG | 3 cut(s) | 358, 359, 906 |
| NcoI | CCATGG | 2 cut(s) | 117, 600 |
| NdeII | GATC | 5 cut(s) | 51, 78, 454, 763, 877 |
| NlaIII | CATG | 6 cut(s) | 121, 604, 916, 934, 992, 1081 |
| NlaIV | GGNNCC | 3 cut(s) | 409, 456, 765 |
| NmuCI | GTSAC | 1 cut(s) | 1048 |
| NspI | RCATGY | 1 cut(s) | 934 |
| PaeR7I | CTCGAG | 1 cut(s) | 309 |
| PagI | TCATGA | 2 cut(s) | 988, 1077 |
| PceI | AGGCCT | 1 cut(s) | 801 |
| PciI | ACATGT | 1 cut(s) | 930 |
| PctI | GAATGC | 1 cut(s) | 984 |
| PfeI | GAWTC | 1 cut(s) | 954 |
| PkrI | GCNGC | 5 cut(s) | 28, 598, 731, 836, 900 |
| PleI | GAGTC | 2 cut(s) | 278, 962 |
| PpsI | GAGTC | 2 cut(s) | 278, 962 |
| PscI | ACATGT | 1 cut(s) | 930 |
| Psp124BI | GAGCTC | 1 cut(s) | 1077 |
| Psp6I | CCWGG | 2 cut(s) | 92, 568 |
| PspEI | GGTNACC | 1 cut(s) | 1048 |
| PspGI | CCWGG | 2 cut(s) | 92, 568 |
| PspN4I | GGNNCC | 3 cut(s) | 409, 456, 765 |
| PspPI | GGNCC | 1 cut(s) | 563 |
| PspXI | VCTCGAGB | 1 cut(s) | 309 |
| PstI | CTGCAG | 1 cut(s) | 1060 |
| PsuI | RGATCY | 2 cut(s) | 454, 763 |
| RsaI | GTAC | 3 cut(s) | 212, 574, 1102 |
| RsaNI | GTAC | 3 cut(s) | 211, 573, 1101 |
| RseI | CAYNNNNRTG | 5 cut(s) | 116, 278, 416, 917, 929 |
| SacI | GAGCTC | 1 cut(s) | 1077 |
| SaqAI | TTAA | 2 cut(s) | 465, 1023 |
| SatI | GCNGC | 5 cut(s) | 27, 597, 730, 835, 899 |
| Sau3AI | GATC | 5 cut(s) | 51, 78, 454, 763, 877 |
| Sau96I | GGNCC | 1 cut(s) | 563 |
| SchI | GAGTC | 2 cut(s) | 278, 962 |
| ScrFI | CCNGG | 5 cut(s) | 94, 358, 359, 570, 906 |
| SduI | GDGCHC | 3 cut(s) | 924, 1043, 1077 |
| SexAI | ACCWGGT | 1 cut(s) | 568 |
| SfaNI | GCATC | 3 cut(s) | 13, 433, 1081 |
| SfcI | CTRYAG | 1 cut(s) | 1056 |
| Sfr274I | CTCGAG | 1 cut(s) | 309 |
| SinI | GGWCC | 1 cut(s) | 563 |
| SlaI | CTCGAG | 1 cut(s) | 309 |
| SmaI | CCCGGG | 1 cut(s) | 359 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 116, 278, 416, 917, 929 |
| SmlI | CTYRAG | 4 cut(s) | 74, 309, 614, 1129 |
| SmoI | CTYRAG | 4 cut(s) | 74, 309, 614, 1129 |
| Sse9I | AATT | 5 cut(s) | 164, 433, 658, 849, 1122 |
| SseBI | AGGCCT | 1 cut(s) | 801 |
| SsiI | CCGC | 2 cut(s) | 29, 837 |
| SspMI | CTAG | 2 cut(s) | 248, 980 |
| SstI | GAGCTC | 1 cut(s) | 1077 |
| StuI | AGGCCT | 1 cut(s) | 801 |
| StyD4I | CCNGG | 5 cut(s) | 92, 356, 357, 568, 904 |
| StyI | CCWWGG | 3 cut(s) | 117, 600, 979 |
| TaaI | ACNGT | 3 cut(s) | 230, 277, 656 |
| TaiI | ACGT | 3 cut(s) | 303, 757, 772 |
| TaqI | TCGA | 4 cut(s) | 310, 584, 957, 1145 |
| TasI | AATT | 5 cut(s) | 164, 433, 658, 849, 1122 |
| TfiI | GAWTC | 1 cut(s) | 954 |
| Tru1I | TTAA | 2 cut(s) | 465, 1023 |
| Tru9I | TTAA | 2 cut(s) | 465, 1023 |
| TscAI | CASTG | 4 cut(s) | 70, 900, 949, 1048 |
| TseFI | GTSAC | 1 cut(s) | 1048 |
| TseI | GCWGC | 5 cut(s) | 26, 596, 729, 834, 898 |
| Tsp45I | GTSAC | 1 cut(s) | 1048 |
| TspDTI | ATGAA | 4 cut(s) | 802, 977, 1005, 1094 |
| TspMI | CCCGGG | 1 cut(s) | 357 |
| TspRI | CASTG | 4 cut(s) | 70, 900, 949, 1048 |
| VneI | GTGCAC | 1 cut(s) | 920 |
| VpaK11BI | GGWCC | 1 cut(s) | 563 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 573 |
| XceI | RCATGY | 1 cut(s) | 934 |
| XhoI | CTCGAG | 1 cut(s) | 309 |
| XmaI | CCCGGG | 1 cut(s) | 357 |
| XmaJI | CCTAGG | 1 cut(s) | 979 |
| XspI | CTAG | 2 cut(s) | 248, 980 |