Rorug02G0092900

Domain associated at C-terminal with AAA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000471
Physical Location & Seq
Forward (+)
7639145 .. 7642416
3272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0092900.1

Sequence Viewer

Length: 2304 bp
ATGGCCTCCTCCGAGGCCCAGTTCTGGTTCGTAGCCTTAACACTTCTTCTGCCATGTCTATCCGTAACCGCCAAACAGACGTACATAGTTCAGATGAAGCGCCATTCCAAACCCTCCTCATTCGCCACCCACAGTGACTGGTACTCCGCCAACCTCCAAGCTCTCTCCTCTGACACTGACTCTGACTCTGACTCTGACGCCCTCCTCTACACCTACGACGCCGCCTACCACGGCTTCGCCGCTTCTCTAGATCCCGAACAGGCCGACACTCTGCGGCAGTCGGAATCTGTAATCGGGGTATTCGAGGATACTTTATACAACCTCCACACCACACGAACACCCGAGTTTCTGGGCCTGGAAACCGCTAATGGGCTCTGGGCCGGACACTCGCTCCAGGACCTGAACCAGGCCTCCAATGACGTCATCGTCGGAGTGCTGGACACCGGAGTCTGGCCGGAGTCCAAGAGCTTCAACGATGCGGGAATGCCAGAGATCCCGTCCAGGTGGCGGGGACAGTGCGAGTCTGGAACCGATTTCAGCCCCTCTCTCTGCAACAAGAAGCTGATCGGAGCCCGGAGCTTTTCTAAAGGCTACCGCATGGCCTCCGGCGGAAGCTACATGAAGAAACCGAAAGAGGCCGAGTCGCCGAGGGACCAAGACGGCCACGGGACCCACACGTCCAGCACCGCCGCCGGGTCGCTGGTGGCGAACGCCAGCCTGCTCGGTTACGCGAGCGGGACGGCACGTGGGATGGCGCCTCACGCGCGGGTTGCCACCTACAAGGTCTGCTGGACCACGGGTTGCTTCGGGTCCGATATCCTCGCGGGTATGGATCGGGCCATCCTCGACGGAGTTGATGTGCTGTCGCTCTCTTTGGGCGGCGGGTCCGCCCCGTACTTTAGGGACACAATCGCAATAGGAGCTTTCACCGCCATGGAGAGGGGCATTTTCGTCTCTTGCTCGGCCGGAAATAGCGGGCCAAGTAGGGCCTCATTGGCCAACACAGCCCCGTGGATCATGACGGTTGGAGCCGGAACCTTGGACCGGGACTTCCCGGCTTTCGCTTTGCTCGGAAACAAAAACCGGTTCACCGGCGTGTCACTTTACAGTGGCACCGGAATGGGGTCAAAACCGGTGGGGTTGGTTTACAACAAGGGGACTAACGGCTCCAGCAATCTGTGCTTGCCCGGTTCGCTCCAACCGGAGTCGGTACGTGGGAAAGTGGTGATTTGCGACAGGGGAGTTAACGCACGTGTGGAGAAAGGTGGAGTTGTACGCGCCGCGGGTGGGGTTGGGATGATACTCGCCAACACCGCCGCGAGCGGAGAGGAAATGGTGGCTGACAGTCACTTGTTACCGGCTGTTGCGGTTGGGAGGAAAGTGGGTGACTTGATAAGGCAGTATGCACAGTCAGATCCGAATCCGACGGCGGTGATTAGCTTTGGTGGGACGGTGCTGAATGTGCGGCCGTCGCCGGTTGTGGCGGCGTTTAGCTCTCGTGGGCCAAATTTGGTTACTCCCCAGATCTTGAAGCCCGATGTGATTGGTCCAGGGGTTAACATCTTGGCTGCATGGTCAGAGGCTATTGGGCCCACTGGGCTTGCGGAGGACTCTAGGAAGAGTCAGTTCAACATCATGTCAGGTACATCTATGTCATGCCCACACATAAGTGGGCTTGCAGCATTGCTCAAAGCGGCCCATCCCAATTGGAGCCCAAGTGCAATCAAATCCGCTCTCATGACTACAGCGTACACACATGACAACACCATGTCTCCTCTCCGTGATGCCGCCGGTGGCACATTTTCGAATCCGTGGGCACATGGTTCTGGCCATGTCGATCCCTCGAAAGCCGTCACGCCGGGTCTTGTATACGACATTTCGAGCGATGACTATGTTGCATTTTTGTGCTCGTTGGACTACACCATCGATCATGTCCAAGCCATTGCTAAGAGAAACGTCACATGCGCAAGAAAGTACTCTGATCCTGGACAACTCAACTACCCTTCATTCTCAGTTGTGTTTGGGAACAAGAGGGTTGTGAGATACAGTCGAGAATTGACAAATGTAGGGACTGCAGGTTCTTTATACAAGGTCATTGTGAGCGGACCACCTGGAGTGAAGACTATTGTTAAACCCTCAAGGCTTTTCTTTGCAACTGTAGGGGAGAAGAAGAAGTACACAGTCACCTTTGTGTCTCCCAAGGGCGGCAGTAGAACATCAAGGTCAGAATTTGGTTCGATCGTGTGGGCAAACCCCCTACACCTAGTTAAGAGCCCAGTTGCTTTTGCATGGACGCTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

767

Amino Acids

81.0

Weight (kDa)

8.67

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 27 - 109 4.5e-19 Peptidase inhibitor I9
Peptidase_S8 PF00082 139 - 587 1e-45 Subtilase family
PA PF02225 382 - 464 5.9e-12 PA domain
fn3_6 PF17766 664 - 761 3.2e-23 Fibronectin type-III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000471)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18190 AT2G18193
fragaria_vesca FvH4_1g12130 FvH4_1g12690 FvH4_1g12700 FvH4_1g12712 FvH4_1g12716 FvH4_1g12731
malus_domestica MD02G1141300.v1.1 MD02G1141400.v1.1 MD02G1141600.v1.1 MD02G1141800.v1.1 MD02G1142200.v1.1 MD15G1254200.v1.1
prunus_persica Prupe.7G159500_v2.0.a1 Prupe.7G159600_v2.0.a1 Prupe.7G165500_v2.0.a1
pyrus_communis pycom02g11130 pycom02g11150 pycom02g11160 pycom02g11180 pycom15g22350
rosa_chinensis RchiOBHm_Chr2g0099791 RchiOBHm_Chr2g0099801 RchiOBHm_Chr2g0100651 RchiOBHm_Chr2g0100681 RchiOBHm_Chr2g0100691 RchiOBHm_Chr2g0100701 RchiOBHm_Chr2g0100721 RchiOBHm_Chr2g0100801 RchiOBHm_Chr3g0459141
rosa_laevigata RLG00000016914 RLG00000016915 RLG00000016997 RLG00000016998 RLG00000017000 RLG00000017002 RLG00000017012 RLG00000025114
rosa_multiflora Rmu_co8416275.1_g000001 Rmu_sc0001187.1_g000004 Rmu_sc0001497.1_g000006 Rmu_sc0001659.1_g000004 Rmu_sc0001659.1_g000006 Rmu_sc0001659.1_g000008 Rmu_sc0001659.1_g000010 Rmu_sc0008864.1_g000008 Rmu_sc0028022.1_g000001
rosa_roxburghii Rroxscaffold_2G00141850 Rroxscaffold_2G00141930 Rroxscaffold_2G00141940 Rroxscaffold_2G00141950 Rroxscaffold_2G00141960 Rroxscaffold_2G00141970
rosa_rugosa Rorug02G0091800 Rorug02G0091800 Rorug02G0091800 Rorug02G0091900 Rorug02G0092900 Rorug03G0033500
rosa_samantha Rh2BG135600 Rh2BG143900 Rh2BG144000 Rh2BG144200 Rh2BG144300 Rh2BG144400 Rh2BG144500 Rh2BG145500 Rh2CG136900 Rh2CG137000 Rh2CG144800 Rh2CG145000 Rh2CG145100 Rh2CG145200 Rh2CG145500 Rh2CG146400 Rh2DG137400 Rh2DG137500 Rh2DG144300 Rh2DG144500 Rh2DG144600 Rh2DG144700 Rh2DG145000 Rh2DG145900 Rh3BG094700 Rh3DG095300
rosa_wichuraiana Rw2G010920 Rw2G010950 Rw2G010990 Rw3G007860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 425, 446, 676
AatII GACGTC 1 cut(s) 423
Acc16I TGCGCA 1 cut(s) 1966
Acc36I ACCTGC 1 cut(s) 2066
AccB1I GGYRCC 2 cut(s) 754, 1112
AccBSI CCGCTC 4 cut(s) 735, 1323, 1733, 2103
AccI GTMKAC 1 cut(s) 1869
AccII CGCG 7 cut(s) 731, 764, 766, 824, 1278, 1283, 1319
AclWI GGATC 7 cut(s) 245, 487, 840, 1022, 1409, 1832, 1976
AcoI YGGCCR 6 cut(s) 452, 661, 963, 996, 1466, 1828
AcsI RAATTY 2 cut(s) 1507, 2228
AcvI CACGTG 2 cut(s) 746, 1253
AcyI GRCGYC 4 cut(s) 198, 219, 420, 755
AfaI GTAC 9 cut(s) 83, 143, 896, 1212, 1275, 1645, 1751, 1976, 2177
AflIII ACRYGT 2 cut(s) 675, 1252
AgeI ACCGGT 2 cut(s) 1083, 1132
AgsI TTSAA 3 cut(s) 472, 1531, 1630
AjiI CACGTC 1 cut(s) 678
AjnI CCWGG 7 cut(s) 354, 393, 405, 500, 1549, 1984, 2110
AleI CACNNNNGTG 3 cut(s) 1094, 1668, 2189
AloI GAACNNNNNNTCC 4 cut(s) 395, 427, 2062, 2094
AluBI AGCT 8 cut(s) 161, 468, 562, 579, 615, 923, 1440, 1494
AluI AGCT 8 cut(s) 161, 468, 562, 579, 615, 923, 1440, 1494
Alw21I GWGCWC 1 cut(s) 1910
Alw26I GTCTC 3 cut(s) 958, 1776, 2199
AlwI GGATC 7 cut(s) 245, 487, 840, 1022, 1409, 1832, 1976
AlwNI CAGNNNCTG 2 cut(s) 138, 400
Ama87I CYCGRG 1 cut(s) 341
ApaI GGGCCC 1 cut(s) 1593
ApeKI GCWGC 2 cut(s) 1568, 1679
ApoI RAATTY 2 cut(s) 1507, 2228
AsiGI ACCGGT 2 cut(s) 1083, 1132
AspLEI GCGC 5 cut(s) 102, 757, 766, 1280, 1967
AsuC2I CCSGG 6 cut(s) 574, 694, 1046, 1055, 1188, 1860
AsuHPI GGTGA 6 cut(s) 919, 1081, 1237, 1397, 1444, 2176
AsuII TTCGAA 1 cut(s) 1805
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 9 cut(s) 397, 652, 669, 792, 810, 885, 1042, 1547, 2105
BaeGI GKGCMC 2 cut(s) 1593, 1819
BalI TGGCCA 2 cut(s) 998, 1830
BanI GGYRCC 2 cut(s) 754, 1112
BanII GRGCYC 5 cut(s) 375, 574, 1593, 1715, 2276
BarI GAAGNNNNNNTAC 2 cut(s) 2159, 2191
BauI CACGAG 1 cut(s) 1497
BbrPI CACGTG 2 cut(s) 746, 1253
BbsI GAAGAC 1 cut(s) 2126
Bbv12I GWGCWC 1 cut(s) 1910
BbvI GCAGC 2 cut(s) 1555, 1691
BccI CCATC 4 cut(s) 745, 848, 1707, 1931
BceAI ACGGC 7 cut(s) 247, 676, 756, 1180, 1443, 1453, 1835
BciT130I CCWGG 7 cut(s) 356, 395, 407, 502, 1551, 1986, 2112
BciVI GTATCC 1 cut(s) 301
BcnI CCSGG 6 cut(s) 574, 694, 1046, 1055, 1188, 1860
BcoDI GTCTC 3 cut(s) 958, 1776, 2199
BfaI CTAG 3 cut(s) 248, 1614, 2264
BfmI CTRYAG 3 cut(s) 1743, 2073, 2157
BfoI RGCGCY 2 cut(s) 103, 758
BfuAI ACCTGC 1 cut(s) 2066
BfuI GTATCC 1 cut(s) 301
BglI GCCNNNNNGGC 2 cut(s) 995, 1597
BglII AGATCT 1 cut(s) 1524
BmcAI AGTACT 1 cut(s) 1976
Bme18I GGWCC 9 cut(s) 397, 652, 669, 792, 810, 885, 1042, 1547, 2105
BmeT110I CYCGRG 1 cut(s) 341
BmgBI CACGTC 1 cut(s) 678
BmrI ACTGGG 3 cut(s) 13, 1605, 2270
BmsI GCATC 2 cut(s) 466, 1774
BmuI ACTGGG 3 cut(s) 13, 1605, 2270
BpiI GAAGAC 1 cut(s) 2126
BpmI CTGGAG 3 cut(s) 377, 1153, 2133
Bpu14I TTCGAA 1 cut(s) 1805
BpuEI CTTGAG 1 cut(s) 2122
BpuMI CCSGG 6 cut(s) 574, 694, 1046, 1055, 1188, 1860
Bsa29I ATCGAT 1 cut(s) 1926
BsaAI YACGTR 3 cut(s) 746, 1214, 1253
BsaBI GATNNNNATC 1 cut(s) 1419
BsaHI GRCGYC 4 cut(s) 198, 219, 420, 755
BsaWI WCCGGW 5 cut(s) 443, 1083, 1115, 1132, 1201
Bse118I RCCGGY 6 cut(s) 1083, 1091, 1132, 1357, 1474, 1790
Bse1I ACTGG 4 cut(s) 19, 143, 1600, 2276
Bse3DI GCAATG 2 cut(s) 1682, 1941
Bse8I GATNNNNATC 1 cut(s) 1419
BseBI CCWGG 7 cut(s) 356, 395, 407, 502, 1551, 1986, 2112
BseCI ATCGAT 1 cut(s) 1926
BseGI GGATG 4 cut(s) 756, 840, 1302, 1699
BseJI GATNNNNATC 1 cut(s) 1419
BseMI GCAATG 2 cut(s) 1682, 1941
BseMII CTCAG 1 cut(s) 2025
BseNI ACTGG 4 cut(s) 19, 143, 1600, 2276
BseRI GAGGAG 4 cut(s) 106, 157, 194, 1764
BseSI GKGCMC 2 cut(s) 1593, 1819
BseX3I CGGCCG 2 cut(s) 963, 1466
BseXI GCAGC 2 cut(s) 1555, 1691
Bsh1236I CGCG 7 cut(s) 731, 764, 766, 824, 1278, 1283, 1319
Bsh1285I CGRYCG 3 cut(s) 966, 1469, 2241
BshNI GGYRCC 2 cut(s) 754, 1112
BshTI ACCGGT 2 cut(s) 1083, 1132
BshVI ATCGAT 1 cut(s) 1926
BsiEI CGRYCG 3 cut(s) 966, 1469, 2241
BsiHKAI GWGCWC 1 cut(s) 1910
BsiHKCI CYCGRG 1 cut(s) 341
BslFI GGGAC 9 cut(s) 525, 665, 682, 751, 917, 1061, 1171, 1462, 2083
BsmAI GTCTC 3 cut(s) 958, 1776, 2199
BsmBI CGTCTC 1 cut(s) 958
BsmFI GGGAC 9 cut(s) 525, 665, 682, 751, 917, 1061, 1171, 1462, 2083
BsmI GAATGC 1 cut(s) 489
BsoBI CYCGRG 1 cut(s) 341
Bsp119I TTCGAA 1 cut(s) 1805
Bsp120I GGGCCC 1 cut(s) 1589
Bsp1286I GDGCHC 7 cut(s) 375, 574, 1593, 1715, 1819, 1910, 2276
Bsp19I CCATGG 1 cut(s) 933
BspCNI CTCAG 1 cut(s) 2024
BspDI ATCGAT 1 cut(s) 1926
BspFNI CGCG 7 cut(s) 731, 764, 766, 824, 1278, 1283, 1319
BspHI TCATGA 2 cut(s) 1017, 1737
BspMAI CTGCAG 1 cut(s) 2077
BspMI ACCTGC 1 cut(s) 2066
BspPI GGATC 7 cut(s) 245, 487, 840, 1022, 1409, 1832, 1976
BspT104I TTCGAA 1 cut(s) 1805
BspT107I GGYRCC 2 cut(s) 754, 1112
BsrBI CCGCTC 4 cut(s) 735, 1323, 1733, 2103
BsrDI GCAATG 2 cut(s) 1682, 1941
BsrFI RCCGGY 6 cut(s) 1083, 1091, 1132, 1357, 1474, 1790
BsrI ACTGG 4 cut(s) 19, 143, 1600, 2276
BssAI RCCGGY 6 cut(s) 1083, 1091, 1132, 1357, 1474, 1790
BssNAI GTATAC 1 cut(s) 1870
BssNI GRCGYC 4 cut(s) 198, 219, 420, 755
BssSI CACGAG 1 cut(s) 1497
BssT1I CCWWGG 3 cut(s) 933, 1038, 2199
Bst1107I GTATAC 1 cut(s) 1870
Bst2BI CACGAG 1 cut(s) 1497
Bst2UI CCWGG 7 cut(s) 356, 395, 407, 502, 1551, 1986, 2112
Bst6I CTCTTC 1 cut(s) 1613
BstACI GRCGYC 4 cut(s) 198, 219, 420, 755
BstAPI GCANNNNNTGC 1 cut(s) 1179
BstBAI YACGTR 3 cut(s) 746, 1214, 1253
BstBI TTCGAA 1 cut(s) 1805
BstC8I GCNNGC 8 cut(s) 715, 719, 733, 977, 1184, 1321, 1602, 1677
BstDEI CTNAG 2 cut(s) 1947, 2011
BstDSI CCRYGG 7 cut(s) 229, 664, 795, 933, 1010, 1281, 1811
BstENI CCTNNNNNAGG 1 cut(s) 404
BstF5I GGATG 4 cut(s) 756, 840, 1302, 1699
BstFNI CGCG 7 cut(s) 731, 764, 766, 824, 1278, 1283, 1319
BstH2I RGCGCY 2 cut(s) 103, 758
BstHHI GCGC 5 cut(s) 102, 757, 766, 1280, 1967
BstMAI GTCTC 3 cut(s) 958, 1776, 2199
BstMCI CGRYCG 3 cut(s) 966, 1469, 2241
BstNI CCWGG 7 cut(s) 356, 395, 407, 502, 1551, 1986, 2112
BstNSI RCATGY 1 cut(s) 1965
BstSFI CTRYAG 3 cut(s) 1743, 2073, 2157
BstSLI GKGCMC 2 cut(s) 1593, 1819
BstUI CGCG 7 cut(s) 731, 764, 766, 824, 1278, 1283, 1319
BstV1I GCAGC 2 cut(s) 1555, 1691
BstV2I GAAGAC 1 cut(s) 2126
BstX2I RGATCY 4 cut(s) 250, 492, 1414, 1524
BstYI RGATCY 4 cut(s) 250, 492, 1414, 1524
BstZ17I GTATAC 1 cut(s) 1870
BstZI CGGCCG 2 cut(s) 963, 1466
Bsu15I ATCGAT 1 cut(s) 1926
BsuI GTATCC 1 cut(s) 301
BsuTUI ATCGAT 1 cut(s) 1926
BtgI CCRYGG 7 cut(s) 229, 664, 795, 933, 1010, 1281, 1811
BtgZI GCGATG 1 cut(s) 1899
BtrI CACGTC 1 cut(s) 678
BtsCI GGATG 4 cut(s) 756, 840, 1302, 1699
BtsIMutI CAGTG 5 cut(s) 139, 174, 521, 1114, 1593
BveI ACCTGC 1 cut(s) 2066
Cac8I GCNNGC 8 cut(s) 715, 719, 733, 977, 1184, 1321, 1602, 1677
CaiI CAGNNNCTG 2 cut(s) 138, 400
CciI TCATGA 2 cut(s) 1017, 1737
CfoI GCGC 5 cut(s) 102, 757, 766, 1280, 1967
Cfr10I RCCGGY 6 cut(s) 1083, 1091, 1132, 1357, 1474, 1790
Cfr42I CCGCGG 1 cut(s) 1284
ClaI ATCGAT 1 cut(s) 1926
CseI GACGC 2 cut(s) 206, 227
Csp6I GTAC 9 cut(s) 82, 142, 895, 1211, 1274, 1644, 1750, 1975, 2176
CspAI ACCGGT 2 cut(s) 1083, 1132
CspCI CAANNNNNGTGG 4 cut(s) 1116, 1151, 1582, 1617
CviQI GTAC 9 cut(s) 82, 142, 895, 1211, 1274, 1644, 1750, 1975, 2176
DdeI CTNAG 2 cut(s) 1947, 2011
DinI GGCGCC 1 cut(s) 756
DrdI GACNNNNNNGTC 3 cut(s) 425, 446, 676
DseDI GACNNNNNNGTC 3 cut(s) 425, 446, 676
EaeI YGGCCR 6 cut(s) 452, 661, 963, 996, 1466, 1828
EagI CGGCCG 2 cut(s) 963, 1466
Eam1104I CTCTTC 1 cut(s) 1613
EarI CTCTTC 1 cut(s) 1613
EciI GGCGGA 3 cut(s) 136, 624, 877
EclXI CGGCCG 2 cut(s) 963, 1466
Eco130I CCWWGG 3 cut(s) 933, 1038, 2199
Eco147I AGGCCT 1 cut(s) 410
Eco24I GRGCYC 5 cut(s) 375, 574, 1593, 1715, 2276
Eco32I GATATC 1 cut(s) 817
Eco47I GGWCC 9 cut(s) 397, 652, 669, 792, 810, 885, 1042, 1547, 2105
Eco52I CGGCCG 2 cut(s) 963, 1466
Eco72I CACGTG 2 cut(s) 746, 1253
Eco88I CYCGRG 1 cut(s) 341
EcoNI CCTNNNNNAGG 1 cut(s) 404
EcoO109I RGGNCCY 3 cut(s) 397, 669, 987
EcoRII CCWGG 7 cut(s) 354, 393, 405, 500, 1549, 1984, 2110
EcoRV GATATC 1 cut(s) 817
EcoT14I CCWWGG 3 cut(s) 933, 1038, 2199
EcoT38I GRGCYC 5 cut(s) 375, 574, 1593, 1715, 2276
EgeI GGCGCC 1 cut(s) 756
EheI GGCGCC 1 cut(s) 756
ErhI CCWWGG 3 cut(s) 933, 1038, 2199
Esp3I CGTCTC 1 cut(s) 958
FaqI GGGAC 9 cut(s) 525, 665, 682, 751, 917, 1061, 1171, 1462, 2083
FauI CCCGC 8 cut(s) 472, 501, 728, 759, 817, 875, 968, 1276
FblI GTMKAC 1 cut(s) 1869
FokI GGATG 4 cut(s) 763, 827, 1309, 1686
FriOI GRGCYC 5 cut(s) 375, 574, 1593, 1715, 2276
FspBI CTAG 3 cut(s) 248, 1614, 2264
FspI TGCGCA 1 cut(s) 1966
GlaI GCGC 5 cut(s) 101, 756, 765, 1279, 1966
GsuI CTGGAG 3 cut(s) 377, 1153, 2133
HaeII RGCGCY 2 cut(s) 103, 758
HgaI GACGC 2 cut(s) 206, 227
HhaI GCGC 5 cut(s) 102, 757, 766, 1280, 1967
Hin1I GRCGYC 4 cut(s) 198, 219, 420, 755
Hin6I GCGC 5 cut(s) 100, 755, 764, 1278, 1965
HinP1I GCGC 5 cut(s) 100, 755, 764, 1278, 1965
HincII GTYRAC 2 cut(s) 1246, 1558
HindII GTYRAC 2 cut(s) 1246, 1558
HpaI GTTAAC 2 cut(s) 1246, 1558
HphI GGTGA 6 cut(s) 919, 1081, 1237, 1397, 1444, 2176
Hpy166II GTNNAC 7 cut(s) 1089, 1147, 1246, 1558, 1752, 1870, 2178
Hpy188III TCNNGA 7 cut(s) 248, 254, 525, 1018, 1528, 1738, 2051
Hpy8I GTNNAC 7 cut(s) 1089, 1147, 1246, 1558, 1752, 1870, 2178
Hpy99I CGWCG 5 cut(s) 221, 431, 851, 1429, 1474
HpyAV CCTTC 1 cut(s) 2013
HpyCH4IV ACGT 7 cut(s) 80, 420, 677, 745, 1213, 1252, 1956
HpyCH4V TGCA 9 cut(s) 552, 1406, 1571, 1679, 1721, 1898, 2075, 2153, 2288
HpyF3I CTNAG 2 cut(s) 1947, 2011
HpySE526I ACGT 7 cut(s) 80, 420, 677, 745, 1213, 1252, 1956
Hsp92I GRCGYC 4 cut(s) 198, 219, 420, 755
HspAI GCGC 5 cut(s) 100, 755, 764, 1278, 1965
KasI GGCGCC 1 cut(s) 754
KflI GGGWCCC 1 cut(s) 669
KspAI GTTAAC 2 cut(s) 1246, 1558
KspI CCGCGG 1 cut(s) 1284
LmnI GCTCC 8 cut(s) 396, 569, 576, 920, 1028, 1172, 1200, 1710
Lsp1109I GCAGC 2 cut(s) 1555, 1691
LweI GCATC 2 cut(s) 466, 1774
MaeI CTAG 3 cut(s) 248, 1614, 2264
MaeII ACGT 7 cut(s) 80, 420, 677, 745, 1213, 1252, 1956
MbiI CCGCTC 4 cut(s) 735, 1323, 1733, 2103
MboII GAAGA 6 cut(s) 38, 634, 1630, 2131, 2179, 2182
MfeI CAATTG 1 cut(s) 1705
MflI RGATCY 4 cut(s) 250, 492, 1414, 1524
MhlI GDGCHC 7 cut(s) 375, 574, 1593, 1715, 1819, 1910, 2276
MlsI TGGCCA 2 cut(s) 998, 1830
MluCI AATT 4 cut(s) 1507, 1705, 2054, 2228
MluNI TGGCCA 2 cut(s) 998, 1830
Mly113I GGCGCC 1 cut(s) 755
MmeI TCCRAC 6 cut(s) 261, 409, 1006, 1222, 1448, 1893
Mox20I TGGCCA 2 cut(s) 998, 1830
MscI TGGCCA 2 cut(s) 998, 1830
MseI TTAA 5 cut(s) 38, 1245, 1557, 2130, 2268
MslI CAYNNNNRTG 6 cut(s) 932, 1094, 1118, 1668, 1903, 2189
Msp20I TGGCCA 2 cut(s) 998, 1830
MspA1I CMGCKG 1 cut(s) 1283
MunI CAATTG 1 cut(s) 1705
Mva1269I GAATGC 1 cut(s) 489
MvaI CCWGG 7 cut(s) 356, 395, 407, 502, 1551, 1986, 2112
MvnI CGCG 7 cut(s) 731, 764, 766, 824, 1278, 1283, 1319
NarI GGCGCC 1 cut(s) 755
NciI CCSGG 6 cut(s) 574, 694, 1046, 1055, 1188, 1860
NcoI CCATGG 1 cut(s) 933
NmeAIII GCCGAG 3 cut(s) 664, 672, 941
NmuCI GTSAC 7 cut(s) 134, 1098, 1346, 1385, 1852, 1957, 2182
NsbI TGCGCA 1 cut(s) 1966
NspI RCATGY 1 cut(s) 1965
NspV TTCGAA 1 cut(s) 1805
OliI CACNNNNGTG 3 cut(s) 1094, 1668, 2189
PagI TCATGA 2 cut(s) 1017, 1737
PceI AGGCCT 1 cut(s) 410
PcsI WCGNNNNNNNCGW 2 cut(s) 300, 704
PctI GAATGC 1 cut(s) 489
PfeI GAWTC 3 cut(s) 284, 1420, 1807
PfoI TCCNGGA 2 cut(s) 393, 1984
PinAI ACCGGT 2 cut(s) 1083, 1132
Ple19I CGATCG 1 cut(s) 2241
PluTI GGCGCC 1 cut(s) 758
PmaCI CACGTG 2 cut(s) 746, 1253
PmlI CACGTG 2 cut(s) 746, 1253
Ppu21I YACGTR 3 cut(s) 746, 1214, 1253
PpuMI RGGWCCY 2 cut(s) 397, 669
Psp5II RGGWCCY 2 cut(s) 397, 669
Psp6I CCWGG 7 cut(s) 354, 393, 405, 500, 1549, 1984, 2110
PspCI CACGTG 2 cut(s) 746, 1253
PspGI CCWGG 7 cut(s) 354, 393, 405, 500, 1549, 1984, 2110
PspOMI GGGCCC 1 cut(s) 1589
PspPPI RGGWCCY 2 cut(s) 397, 669
PstI CTGCAG 1 cut(s) 2077
PstNI CAGNNNCTG 2 cut(s) 138, 400
PsuI RGATCY 4 cut(s) 250, 492, 1414, 1524
PvuI CGATCG 1 cut(s) 2241
RsaI GTAC 9 cut(s) 83, 143, 896, 1212, 1275, 1645, 1751, 1976, 2177
RsaNI GTAC 9 cut(s) 82, 142, 895, 1211, 1274, 1644, 1750, 1975, 2176
RseI CAYNNNNRTG 6 cut(s) 932, 1094, 1118, 1668, 1903, 2189
SacII CCGCGG 1 cut(s) 1284
SaqAI TTAA 5 cut(s) 38, 1245, 1557, 2130, 2268
ScaI AGTACT 1 cut(s) 1976
SduI GDGCHC 7 cut(s) 375, 574, 1593, 1715, 1819, 1910, 2276
SfaNI GCATC 2 cut(s) 466, 1774
SfcI CTRYAG 3 cut(s) 1743, 2073, 2157
SfiI GGCCNNNNNGGCC 1 cut(s) 995
SfoI GGCGCC 1 cut(s) 756
Sfr303I CCGCGG 1 cut(s) 1284
SfuI TTCGAA 1 cut(s) 1805
SgrAI CRCCGGYG 2 cut(s) 1091, 1790
SgrBI CCGCGG 1 cut(s) 1284
SinI GGWCC 9 cut(s) 397, 652, 669, 792, 810, 885, 1042, 1547, 2105
SmiMI CAYNNNNRTG 6 cut(s) 932, 1094, 1118, 1668, 1903, 2189
SmlI CTYRAG 1 cut(s) 2137
SmoI CTYRAG 1 cut(s) 2137
Sse9I AATT 4 cut(s) 1507, 1705, 2054, 2228
SseBI AGGCCT 1 cut(s) 410
SspDI GGCGCC 1 cut(s) 754
SspMI CTAG 3 cut(s) 248, 1614, 2264
StuI AGGCCT 1 cut(s) 410
StyI CCWWGG 3 cut(s) 933, 1038, 2199
TaiI ACGT 7 cut(s) 83, 423, 680, 748, 1216, 1255, 1959
TaqI TCGA 9 cut(s) 303, 846, 1805, 1836, 1844, 1880, 1926, 2050, 2237
TasI AATT 4 cut(s) 1507, 1705, 2054, 2228
TatI WGTACW 2 cut(s) 1974, 2175
TfiI GAWTC 3 cut(s) 284, 1420, 1807
Tru1I TTAA 5 cut(s) 38, 1245, 1557, 2130, 2268
Tru9I TTAA 5 cut(s) 38, 1245, 1557, 2130, 2268
TscAI CASTG 5 cut(s) 139, 181, 521, 1114, 1600
TseFI GTSAC 7 cut(s) 134, 1098, 1346, 1385, 1852, 1957, 2182
TseI GCWGC 2 cut(s) 1568, 1679
Tsp45I GTSAC 7 cut(s) 134, 1098, 1346, 1385, 1852, 1957, 2182
TspDTI ATGAA 3 cut(s) 110, 635, 1995
TspGWI ACGGA 4 cut(s) 52, 864, 1769, 1800
TspRI CASTG 5 cut(s) 139, 181, 521, 1114, 1600
VpaK11BI GGWCC 9 cut(s) 397, 652, 669, 792, 810, 885, 1042, 1547, 2105
XagI CCTNNNNNAGG 1 cut(s) 404
XapI RAATTY 2 cut(s) 1507, 2228
XbaI TCTAGA 1 cut(s) 247
XceI RCATGY 1 cut(s) 1965
XmiI GTMKAC 1 cut(s) 1869
XspI CTAG 3 cut(s) 248, 1614, 2264
ZraI GACGTC 1 cut(s) 421
ZrmI AGTACT 1 cut(s) 1976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.