Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Reverse (-)

8073167 .. 8075009

Gene Structure 1843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGATTGGGTTATTCAAAGTGAAAGAGAAGCAAAGAGAAGAGTCTCAAAGTAACAACGGAAGAGGAGCTTCTACTGTCAAGAAGCAATCTGCTGGTGAACTTCGTCTTCACAAAGATATATCGGAGCTGAACTTACCAAAGTCTTGTAAGATATCTTTTCCGAATGGGAAGAATGACTTGATGAATTTTGAAGTAACCATTAAACCTGATGAAGGATATTACTTGAGTGGTAACTTTGTGTTCTCATTCCAAGTCTCTAATATGTACCCCCACGAAGCTCCTAAAGTGAAATGCAAGACCAAGGTGTATCATCCGAATATCGATCTAGAAGGAAACGTCTGTCTGAACATCTTGCGTGAAGACTGGAAACCGGTTCTCAACATAAACACAGTTATCTACGGTCTTTTCCATCTCTTCACGGAACCCAATTACGAGGATCCTCTGAACCATGAAGCAGCTGCAGTGTTGAGGGATAACCCGAAGACGTTCGAGTATAATGTCAGAAGGGCAATGATGGGTGGCCAAGTTGGCCAAACCTCATTTCCTCGCTGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

185

Amino Acids

21.13

Weight (kDa)

8.6

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	35 - 170	2.5e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	431, 444
AcoI	YGGCCR	2 cut(s)	520, 529
AcsI	RAATTY	1 cut(s)	184
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgeI	ACCGGT	1 cut(s)	370
AgsI	TTSAA	2 cut(s)	16, 191
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
AluBI	AGCT	4 cut(s)	68, 127, 278, 458
AluI	AGCT	4 cut(s)	68, 127, 278, 458
Alw26I	GTCTC	2 cut(s)	48, 259
AlwI	GGATC	2 cut(s)	431, 444
AoxI	GGCC	2 cut(s)	520, 529
ApeKI	GCWGC	3 cut(s)	455, 458, 549
ApoI	RAATTY	1 cut(s)	184
AsiGI	ACCGGT	1 cut(s)	370
Asp700I	GAANNNNTTC	1 cut(s)	485
AsuHPI	GGTGA	1 cut(s)	107
BalI	TGGCCA	2 cut(s)	522, 531
BamHI	GGATCC	1 cut(s)	436
BbsI	GAAGAC	3 cut(s)	98, 366, 488
BbvI	GCAGC	3 cut(s)	445, 467, 536
BccI	CCATC	2 cut(s)	417, 508
BcoDI	GTCTC	2 cut(s)	48, 259
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	459
BglI	GCCNNNNNGGC	1 cut(s)	528
BisI	GCNGC	3 cut(s)	456, 459, 550
BlsI	GCNGC	3 cut(s)	457, 460, 551
BmiI	GGNNCC	2 cut(s)	423, 438
BpiI	GAAGAC	3 cut(s)	98, 366, 488
BpuEI	CTTGAG	1 cut(s)	244
Bsa29I	ATCGAT	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	1 cut(s)	368
Bse3DI	GCAATG	1 cut(s)	516
BseCI	ATCGAT	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMI	GCAATG	1 cut(s)	516
BseNI	ACTGG	1 cut(s)	368
BseRI	GAGGAG	1 cut(s)	78
BseXI	GCAGC	3 cut(s)	445, 467, 536
BshFI	GGCC	2 cut(s)	522, 531
BshTI	ACCGGT	1 cut(s)	370
BshVI	ATCGAT	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	2 cut(s)	48, 259
BsnI	GGCC	2 cut(s)	522, 531
Bsp143I	GATC	2 cut(s)	322, 436
BspANI	GGCC	2 cut(s)	522, 531
BspDI	ATCGAT	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	423, 438
BspMAI	CTGCAG	1 cut(s)	463
BspPI	GGATC	2 cut(s)	431, 444
BsrDI	GCAATG	1 cut(s)	516
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	1 cut(s)	368
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	2 cut(s)	322, 436
BssT1I	CCWWGG	1 cut(s)	300
Bst4CI	ACNGT	3 cut(s)	76, 391, 401
Bst6I	CTCTTC	3 cut(s)	33, 55, 419
BstENI	CCTNNNNNAGG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	2 cut(s)	325, 439
BstMAI	GTCTC	2 cut(s)	48, 259
BstMBI	GATC	2 cut(s)	322, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	528
BstNSI	RCATGY	1 cut(s)	556
BstSFI	CTRYAG	1 cut(s)	459
BstV1I	GCAGC	3 cut(s)	445, 467, 536
BstV2I	GAAGAC	3 cut(s)	98, 366, 488
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
Bsu15I	ATCGAT	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	522, 531
BsuTUI	ATCGAT	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	310
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
Cfr10I	RCCGGY	1 cut(s)	370
ClaI	ATCGAT	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	265
CspAI	ACCGGT	1 cut(s)	370
CviAII	CATG	2 cut(s)	449, 553
CviJI	RGCY	6 cut(s)	68, 127, 278, 458, 522, 531
CviKI_1	RGCY	6 cut(s)	68, 127, 278, 458, 522, 531
CviQI	GTAC	1 cut(s)	265
DpnI	GATC	2 cut(s)	324, 438
DpnII	GATC	2 cut(s)	322, 436
EaeI	YGGCCR	2 cut(s)	520, 529
Eam1104I	CTCTTC	3 cut(s)	33, 55, 419
EarI	CTCTTC	3 cut(s)	33, 55, 419
Eco130I	CCWWGG	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	153
EcoNI	CCTNNNNNAGG	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	452, 556
FaiI	YATR	6 cut(s)	119, 263, 383, 450, 495, 554
FalI	AAGNNNNNCTT	4 cut(s)	52, 84, 161, 193
FatI	CATG	2 cut(s)	448, 552
Fnu4HI	GCNGC	3 cut(s)	456, 459, 550
FokI	GGATG	1 cut(s)	297
Fsp4HI	GCNGC	3 cut(s)	456, 459, 550
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	3 cut(s)	456, 459, 550
HaeIII	GGCC	2 cut(s)	522, 531
HapII	CCGG	1 cut(s)	371
Hin1II	CATG	2 cut(s)	452, 556
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	6 cut(s)	124, 162, 315, 345, 444, 503
Hpy188III	TCNNGA	2 cut(s)	79, 326
Hpy8I	GTNNAC	1 cut(s)	98
HpyAV	CCTTC	3 cut(s)	206, 323, 498
HpyCH4III	ACNGT	3 cut(s)	76, 391, 401
HpyCH4IV	ACGT	2 cut(s)	336, 485
HpyCH4V	TGCA	3 cut(s)	294, 461, 552
HpyF10VI	GCNNNNNNNGC	1 cut(s)	528
HpySE526I	ACGT	2 cut(s)	336, 485
Hsp92II	CATG	2 cut(s)	452, 556
Kzo9I	GATC	2 cut(s)	322, 436
LmnI	GCTCC	3 cut(s)	65, 124, 283
LpnPI	CCDG	4 cut(s)	78, 219, 349, 384
Lsp1109I	GCAGC	3 cut(s)	445, 467, 536
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	2 cut(s)	336, 485
MaeIII	GTNAC	3 cut(s)	50, 193, 230
MalI	GATC	2 cut(s)	324, 438
MboI	GATC	2 cut(s)	322, 436
MboII	GAAGA	7 cut(s)	50, 72, 98, 181, 371, 406, 493
MflI	RGATCY	1 cut(s)	436
MlsI	TGGCCA	2 cut(s)	522, 531
MluCI	AATT	2 cut(s)	184, 427
MluNI	TGGCCA	2 cut(s)	522, 531
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	6 cut(s)	56, 427, 450, 462, 547, 555
Mox20I	TGGCCA	2 cut(s)	522, 531
MroXI	GAANNNNTTC	1 cut(s)	485
MscI	TGGCCA	2 cut(s)	522, 531
MseI	TTAA	1 cut(s)	201
Msp20I	TGGCCA	2 cut(s)	522, 531
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	528
NdeII	GATC	2 cut(s)	322, 436
NlaIII	CATG	2 cut(s)	452, 556
NlaIV	GGNNCC	2 cut(s)	423, 438
NspI	RCATGY	1 cut(s)	556
PdmI	GAANNNNTTC	1 cut(s)	485
PinAI	ACCGGT	1 cut(s)	370
PkrI	GCNGC	3 cut(s)	457, 460, 551
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	423, 438
PstI	CTGCAG	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	3 cut(s)	456, 459, 550
Sau3AI	GATC	2 cut(s)	322, 436
SchI	GAGTC	1 cut(s)	50
SetI	ASST	9 cut(s)	70, 129, 208, 280, 306, 339, 460, 488, 539
SfcI	CTRYAG	1 cut(s)	459
SfiI	GGCCNNNNNGGCC	1 cut(s)	528
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	2 cut(s)	184, 427
SspMI	CTAG	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	3 cut(s)	76, 391, 401
TaiI	ACGT	2 cut(s)	339, 488
TaqI	TCGA	2 cut(s)	321, 489
TasI	AATT	2 cut(s)	184, 427
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	468
TseI	GCWGC	3 cut(s)	455, 458, 549
TspDTI	ATGAA	3 cut(s)	197, 225, 465
TspGWI	ACGGA	2 cut(s)	72, 434
TspRI	CASTG	1 cut(s)	468
XagI	CCTNNNNNAGG	1 cut(s)	210
XapI	RAATTY	1 cut(s)	184
XbaI	TCTAGA	1 cut(s)	325
XceI	RCATGY	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.