Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Forward (+)

59552544 .. 59553092

Gene Structure 549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG408900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGATCAGGCTATTTAAAGTTAAGGAGAAGCAGAGAGAACTTGCTGAAGCCAATGGAGGAAAACATGTCAAGAAGCAATCAGCTGGCGAATTGCGCCTTCACAAAGATATAACTGAGCTGAACTTACCAAAATCTTGTGTTATATACTTCCCCAAAGGCAAGGACAACCTCAAAGCTTTTGAGGTTTCGATTAGACCAGATGAAGGATATTACACAGGTGGAAAGTTTGTGTTTTCTTTCCAGATTTCGGATTTCTATCCACACGAGGCACCAAAAGTTAAGTGTATGACAAAGGTCTACCATCCCAATATCGACTTGGAAGGGAATGTCTGCCTCAACATCCTACGAGAAGATTGGAAGCCTGTGCTTAACATAAACACCATTGTTTATGGATTGTATCATCTTTTCACGGACCCGAATCATGAAGATCCCTTAAATCATGATGCAGCTGAAGTTTTGAGAGACAAGCCGAAGGAGTTTGCGTCTAATGTAAGAAGGGCTATATCCGGTGGGTATGTGGGGAAAACTTGTTTCTCAAGGTGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

182

Amino Acids

20.87

Weight (kDa)

9.0

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	32 - 166	3.5e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	297
AclWI	GGATC	1 cut(s)	422
AcuI	CTGAAG	2 cut(s)	66, 471
AfiI	CCNNNNNNNGG	2 cut(s)	203, 247
AflIII	ACRYGT	1 cut(s)	64
AluBI	AGCT	4 cut(s)	83, 118, 176, 449
AluI	AGCT	4 cut(s)	83, 118, 176, 449
Alw26I	GTCTC	1 cut(s)	456
AlwI	GGATC	1 cut(s)	422
ApeKI	GCWGC	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	412
AvaII	GGWCC	1 cut(s)	412
BanI	GGYRCC	1 cut(s)	268
BauI	CACGAG	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	1 cut(s)	309
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	456
BisI	GCNGC	1 cut(s)	447
BlsI	GCNGC	1 cut(s)	448
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	2 cut(s)	270, 414
BmsI	GCATC	1 cut(s)	433
BoxI	GACNNNNGTC	1 cut(s)	293
BpuEI	CTTGAG	1 cut(s)	520
BsaBI	GATNNNNATC	1 cut(s)	255
BsaWI	WCCGGW	1 cut(s)	506
BsaXI	ACNNNNNCTCC	2 cut(s)	467, 497
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 247
Bse8I	GATNNNNATC	1 cut(s)	255
BseGI	GGATG	2 cut(s)	301, 339
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	203, 247
BseMII	CTCAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	458
BshNI	GGYRCC	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	507
BslI	CCNNNNNNNGG	2 cut(s)	203, 247
BsmAI	GTCTC	1 cut(s)	456
Bsp143I	GATC	2 cut(s)	3, 427
BspCNI	CTCAG	1 cut(s)	106
BspHI	TCATGA	2 cut(s)	421, 439
BspLI	GGNNCC	2 cut(s)	270, 414
BspPI	GGATC	1 cut(s)	422
BspT107I	GGYRCC	1 cut(s)	268
BssMI	GATC	2 cut(s)	3, 427
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	301, 339
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	2 cut(s)	6, 430
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	2 cut(s)	3, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	68
BstPAI	GACNNNNGTC	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	458
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	301, 339
Cac8I	GCNNGC	1 cut(s)	85
CciI	TCATGA	2 cut(s)	421, 439
CfoI	GCGC	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	412
CseI	GACGC	1 cut(s)	471
CviAII	CATG	3 cut(s)	65, 422, 440
CviJI	RGCY	9 cut(s)	10, 50, 83, 118, 176, 361, 449, 469, 500
CviKI_1	RGCY	9 cut(s)	10, 50, 83, 118, 176, 361, 449, 469, 500
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	2 cut(s)	5, 429
DpnII	GATC	2 cut(s)	3, 427
DraI	TTTAAA	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	412
Eco57I	CTGAAG	2 cut(s)	66, 471
FaeI	CATG	3 cut(s)	68, 425, 443
FatI	CATG	3 cut(s)	64, 421, 439
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	2 cut(s)	288, 326
Fsp4HI	GCNGC	1 cut(s)	447
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	447
HapII	CCGG	1 cut(s)	507
HgaI	GACGC	1 cut(s)	471
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	3 cut(s)	68, 425, 443
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	1 cut(s)	418
HpaII	CCGG	1 cut(s)	507
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	4 cut(s)	70, 241, 422, 440
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	5 cut(s)	107, 197, 314, 466, 489
HpyCH4V	TGCA	2 cut(s)	446, 543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	68, 425, 443
HspAI	GCGC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 427
LpnPI	CCDG	6 cut(s)	69, 201, 210, 254, 375, 520
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	1 cut(s)	433
MalI	GATC	2 cut(s)	5, 429
MboI	GATC	2 cut(s)	3, 427
MboII	GAAGA	2 cut(s)	362, 437
MflI	RGATCY	1 cut(s)	427
MluCI	AATT	1 cut(s)	89
MnlI	CCTC	5 cut(s)	50, 175, 179, 259, 344
MseI	TTAA	5 cut(s)	15, 21, 279, 369, 434
MspA1I	CMGCKG	2 cut(s)	83, 449
MspI	CCGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	1 cut(s)	93
NdeII	GATC	2 cut(s)	3, 427
NlaIII	CATG	3 cut(s)	68, 425, 443
NlaIV	GGNNCC	2 cut(s)	270, 414
NspI	RCATGY	1 cut(s)	68
PagI	TCATGA	2 cut(s)	421, 439
PciI	ACATGT	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	418
PkrI	GCNGC	1 cut(s)	448
PscI	ACATGT	1 cut(s)	64
PshAI	GACNNNNGTC	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	270, 414
PspPI	GGNCC	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	427
PvuII	CAGCTG	2 cut(s)	83, 449
SaqAI	TTAA	5 cut(s)	15, 21, 279, 369, 434
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	2 cut(s)	3, 427
Sau96I	GGNCC	1 cut(s)	412
SetI	ASST	9 cut(s)	85, 120, 171, 178, 186, 220, 297, 451, 542
SfaNI	GCATC	1 cut(s)	433
SinI	GGWCC	1 cut(s)	412
SmlI	CTYRAG	1 cut(s)	535
SmoI	CTYRAG	1 cut(s)	535
Sse9I	AATT	1 cut(s)	89
TaqI	TCGA	2 cut(s)	188, 312
TasI	AATT	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	5 cut(s)	15, 21, 279, 369, 434
Tru9I	TTAA	5 cut(s)	15, 21, 279, 369, 434
TseI	GCWGC	1 cut(s)	446
TspDTI	ATGAA	2 cut(s)	216, 438
TspGWI	ACGGA	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	412
XceI	RCATGY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.