Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Reverse (-)

17395600 .. 17396537

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g23340.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAACTTTGAGGTTACAATTTGTCCGGATGAAGGATATTACAAAGGCGGTGTGTTTTTGTTTACGTTCCAAGTTGCCCCTATCTATCCACATGAAGCACCAAAAGTCAAGTGTAAGACCAAGGTCTACCATCCGAATATTGACTTGGAAGGAAATGTTTGCCTCAACATCCTACGAGAAGATTGGAAACCTGTCCTTAATATAAACACTATCATTTATGGACTATATCATCTCTTCACGGAACCAAATTATGAAGATCCACTAAATCATGATGCAGCTGCAGTGTTGAGAGACAACCCGAAGTTGTTTGAATCTAATGTAAGAAGGGCCATGGCCGGTGGGTATGTGGGGCAAACCTTGTTCCCCCGGTGCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

126

Amino Acids

14.31

Weight (kDa)

6.05

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	25
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	311
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
Alw21I	GWGCWC	1 cut(s)	374
Alw26I	GTCTC	1 cut(s)	285
Alw44I	GTGCAC	1 cut(s)	370
AlwI	GGATC	1 cut(s)	251
Aor13HI	TCCGGA	1 cut(s)	25
AoxI	GGCC	2 cut(s)	327, 333
ApaLI	GTGCAC	1 cut(s)	370
ApeKI	GCWGC	2 cut(s)	275, 278
AspS9I	GGNCC	1 cut(s)	327
AsuC2I	CCSGG	1 cut(s)	367
BaeGI	GKGCMC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	265, 287
BccI	CCATC	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	279
BisI	GCNGC	2 cut(s)	276, 279
BlsI	GCNGC	2 cut(s)	277, 280
Bme1390I	CCNGG	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	327
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	367
BmsI	GCATC	1 cut(s)	262
BoxI	GACNNNNGTC	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	367
BsaJI	CCNNGG	3 cut(s)	120, 330, 365
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse118I	RCCGGY	1 cut(s)	335
BseAI	TCCGGA	1 cut(s)	25
BseDI	CCNNGG	3 cut(s)	120, 330, 365
BseGI	GGATG	3 cut(s)	34, 130, 168
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	374
BseXI	GCAGC	2 cut(s)	265, 287
BshFI	GGCC	2 cut(s)	329, 335
BsiHKAI	GWGCWC	1 cut(s)	374
BsiSI	CCGG	3 cut(s)	26, 336, 367
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	285
BsnI	GGCC	2 cut(s)	329, 335
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp13I	TCCGGA	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	256
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	329, 335
BspEI	TCCGGA	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	335
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	3 cut(s)	120, 330, 365
BssMI	GATC	1 cut(s)	256
BssT1I	CCWWGG	2 cut(s)	120, 330
Bst6I	CTCTTC	1 cut(s)	239
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	3 cut(s)	34, 130, 168
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	256
BstPAI	GACNNNNGTC	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	374
BstV1I	GCAGC	2 cut(s)	265, 287
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	329, 335
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	3 cut(s)	34, 130, 168
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
CciI	TCATGA	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	327
CviAII	CATG	3 cut(s)	92, 269, 331
CviJI	RGCY	3 cut(s)	278, 329, 335
CviKI_1	RGCY	3 cut(s)	278, 329, 335
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco130I	CCWWGG	2 cut(s)	120, 330
EcoT14I	CCWWGG	2 cut(s)	120, 330
ErhI	CCWWGG	2 cut(s)	120, 330
FaeI	CATG	3 cut(s)	95, 272, 334
FaiI	YATR	9 cut(s)	93, 203, 219, 226, 252, 270, 332, 345, 376
FatI	CATG	3 cut(s)	91, 268, 330
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	276, 279
FokI	GGATG	3 cut(s)	41, 117, 155
Fsp4HI	GCNGC	2 cut(s)	276, 279
GluI	GCNGC	2 cut(s)	276, 279
HaeIII	GGCC	2 cut(s)	329, 335
HapII	CCGG	3 cut(s)	26, 336, 367
Hin1II	CATG	3 cut(s)	95, 272, 334
HinfI	GANTC	1 cut(s)	311
HpaII	CCGG	3 cut(s)	26, 336, 367
Hpy166II	GTNNAC	3 cut(s)	63, 127, 372
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	2 cut(s)	26, 269
Hpy8I	GTNNAC	3 cut(s)	63, 127, 372
HpyAV	CCTTC	3 cut(s)	26, 143, 318
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	3 cut(s)	275, 281, 372
HpySE526I	ACGT	1 cut(s)	65
Hsp92II	CATG	3 cut(s)	95, 272, 334
Kpn2I	TCCGGA	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	256
LpnPI	CCDG	3 cut(s)	39, 204, 349
Lsp1109I	GCAGC	2 cut(s)	265, 287
LweI	GCATC	1 cut(s)	262
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	3 cut(s)	191, 226, 266
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	374
MluCI	AATT	2 cut(s)	18, 247
MnlI	CCTC	2 cut(s)	4, 173
MroI	TCCGGA	1 cut(s)	25
MseI	TTAA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	3 cut(s)	26, 336, 367
MspR9I	CCNGG	1 cut(s)	367
NciI	CCSGG	1 cut(s)	367
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	3 cut(s)	95, 272, 334
NlaIV	GGNNCC	1 cut(s)	243
PagI	TCATGA	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	277, 280
PshAI	GACNNNNGTC	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	327
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	2 cut(s)	276, 279
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	1 cut(s)	327
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	1 cut(s)	374
SetI	ASST	6 cut(s)	15, 68, 126, 193, 280, 359
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	279
Sse9I	AATT	2 cut(s)	18, 247
SsiI	CCGC	1 cut(s)	48
SspI	AATATT	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	365
StyI	CCWWGG	2 cut(s)	120, 330
TaiI	ACGT	1 cut(s)	68
TasI	AATT	2 cut(s)	18, 247
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	1 cut(s)	288
TseI	GCWGC	2 cut(s)	275, 278
TspDTI	ATGAA	4 cut(s)	17, 45, 108, 267
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	288
VneI	GTGCAC	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.