Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Forward (+)

13067080 .. 13073420

Gene Structure 6341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG113700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGCTGTATATGTTTATTTTGGTGCTGTATTGTAGGAAAAATGATTAAGCTATTTAAAGTGAAGGAAAAGCAGAGGGAGCTTGCTGAAAATGCCAATGGAAAGACACTGGTTAAGAAGCAAAGCGCAGGAGAATTACGGCTTCATAGAGATATTAGTGAGCTGAACCTACAGAAAACATGTACCATAGCATTCCCCAATGGTAAGGACGATTTAATGAACTTTGAGGTTACCGTCCGGCCTGATGAAGGATACTATCTAGGCGGTACATTTATGTTCACATTTCAAGTTTCTCCCATGTATCCTCATGAGGCGCCAAAGGTCAAGTGCAAGACAAAGGTCTATCATCCTAATATTGACTTGGAAGGAAACGTCTGCCTCAACATTCTAAGAGAAGACTGGAAACCTGTTTTGAATATCAATACTATAATATATGGACTCTTTCATCTTTTTACGCAACCCAATTATGAAGATCCCCTTAATCATGATGCAGCTGCTGTCCTAAGGGATAACCCCAAGATGTTTGAGTCCAATGTGAGAAGAGCTATGTCTGGTGGGTATGTGGGGCAGACCTTATTCCCGCGGTGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

197

Amino Acids

22.62

Weight (kDa)

8.58

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	47 - 182	2.1e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	313
AccII	CGCG	1 cut(s)	583
AciI	CCGC	3 cut(s)	264, 581, 583
AclWI	GGATC	1 cut(s)	467
AcyI	GRCGYC	1 cut(s)	314
AfaI	GTAC	2 cut(s)	184, 268
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	287, 415
AluBI	AGCT	6 cut(s)	6, 52, 82, 163, 494, 545
AluI	AGCT	6 cut(s)	6, 52, 82, 163, 494, 545
AlwI	GGATC	1 cut(s)	467
AlwNI	CAGNNNCTG	1 cut(s)	497
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	491, 494
AspLEI	GCGC	2 cut(s)	128, 316
AxyI	CCTNAGG	1 cut(s)	503
BanI	GGYRCC	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	481, 503
BceAI	ACGGC	1 cut(s)	155
BciVI	GTATCC	2 cut(s)	245, 312
BfaI	CTAG	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	170
BfoI	RGCGCY	1 cut(s)	317
BfuI	GTATCC	2 cut(s)	245, 312
BisI	GCNGC	2 cut(s)	492, 495
BlsI	GCNGC	2 cut(s)	493, 496
BmiI	GGNNCC	1 cut(s)	315
BmsI	GCATC	1 cut(s)	478
BoxI	GACNNNNGTC	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	581
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	114, 404
Bse21I	CCTNAGG	1 cut(s)	503
BseDI	CCNNGG	1 cut(s)	581
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseNI	ACTGG	2 cut(s)	114, 404
BseXI	GCAGC	2 cut(s)	481, 503
Bsh1236I	CGCG	1 cut(s)	583
BshFI	GGCC	1 cut(s)	241
BshNI	GGYRCC	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	472
BspACI	CCGC	3 cut(s)	264, 581, 583
BspANI	GGCC	1 cut(s)	241
BspFNI	CGCG	1 cut(s)	583
BspHI	TCATGA	2 cut(s)	307, 484
BspLI	GGNNCC	1 cut(s)	315
BspPI	GGATC	1 cut(s)	467
BspQI	GCTCTTC	1 cut(s)	535
BspT107I	GGYRCC	1 cut(s)	313
BsrI	ACTGG	2 cut(s)	114, 404
BssECI	CCNNGG	1 cut(s)	581
BssMI	GATC	1 cut(s)	472
BssNI	GRCGYC	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	535
BstACI	GRCGYC	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	389, 503
BstDSI	CCRYGG	1 cut(s)	581
BstEII	GGTNACC	1 cut(s)	229
BstENI	CCTNNNNNAGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	346
BstFNI	CGCG	1 cut(s)	583
BstH2I	RGCGCY	1 cut(s)	317
BstHHI	GCGC	2 cut(s)	128, 316
BstKTI	GATC	1 cut(s)	475
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 92
BstNSI	RCATGY	2 cut(s)	183, 592
BstPAI	GACNNNNGTC	1 cut(s)	338
BstPI	GGTNACC	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	170
BstUI	CGCG	1 cut(s)	583
BstV1I	GCAGC	2 cut(s)	481, 503
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
Bsu36I	CCTNAGG	1 cut(s)	503
BsuI	GTATCC	2 cut(s)	245, 312
BsuRI	GGCC	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	581
BtsCI	GGATG	1 cut(s)	346
BtsIMutI	CAGTG	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	84
CaiI	CAGNNNCTG	1 cut(s)	497
CciI	TCATGA	2 cut(s)	307, 484
CfoI	GCGC	2 cut(s)	128, 316
Cfr42I	CCGCGG	1 cut(s)	584
Csp6I	GTAC	2 cut(s)	183, 267
CviAII	CATG	5 cut(s)	180, 298, 308, 485, 589
CviJI	RGCY	8 cut(s)	6, 52, 82, 142, 163, 241, 494, 545
CviKI_1	RGCY	8 cut(s)	6, 52, 82, 142, 163, 241, 494, 545
CviQI	GTAC	2 cut(s)	183, 267
DdeI	CTNAG	2 cut(s)	389, 503
DinI	GGCGCC	1 cut(s)	315
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
DraI	TTTAAA	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	535
EarI	CTCTTC	1 cut(s)	535
Eco81I	CCTNAGG	1 cut(s)	503
Eco91I	GGTNACC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	246
EcoO65I	GGTNACC	1 cut(s)	229
EgeI	GGCGCC	1 cut(s)	315
EheI	GGCGCC	1 cut(s)	315
FaeI	CATG	5 cut(s)	183, 301, 311, 488, 592
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FatI	CATG	5 cut(s)	179, 297, 307, 484, 588
FauI	CCCGC	1 cut(s)	588
Fnu4HI	GCNGC	2 cut(s)	492, 495
FokI	GGATG	1 cut(s)	333
Fsp4HI	GCNGC	2 cut(s)	492, 495
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	2 cut(s)	127, 315
GluI	GCNGC	2 cut(s)	492, 495
HaeII	RGCGCY	1 cut(s)	317
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	1 cut(s)	238
HhaI	GCGC	2 cut(s)	128, 316
Hin1I	GRCGYC	1 cut(s)	314
Hin1II	CATG	5 cut(s)	183, 301, 311, 488, 592
Hin6I	GCGC	2 cut(s)	126, 314
HinP1I	GCGC	2 cut(s)	126, 314
HinfI	GANTC	2 cut(s)	438, 527
HpaII	CCGG	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	279
Hpy188III	TCNNGA	2 cut(s)	308, 485
Hpy8I	GTNNAC	1 cut(s)	279
HpyAV	CCTTC	3 cut(s)	58, 242, 359
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	3 cut(s)	330, 491, 588
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 92
HpyF3I	CTNAG	2 cut(s)	389, 503
HpySE526I	ACGT	1 cut(s)	372
Hsp92I	GRCGYC	1 cut(s)	314
Hsp92II	CATG	5 cut(s)	183, 301, 311, 488, 592
HspAI	GCGC	2 cut(s)	126, 314
KasI	GGCGCC	1 cut(s)	313
KspI	CCGCGG	1 cut(s)	584
Kzo9I	GATC	1 cut(s)	472
LguI	GCTCTTC	1 cut(s)	535
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	7 cut(s)	95, 114, 251, 255, 385, 420, 537
Lsp1109I	GCAGC	2 cut(s)	481, 503
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MboII	GAAGA	3 cut(s)	407, 482, 552
MflI	RGATCY	1 cut(s)	472
MluCI	AATT	2 cut(s)	134, 463
Mly113I	GGCGCC	1 cut(s)	314
MlyI	GAGTC	2 cut(s)	432, 536
MnlI	CCTC	5 cut(s)	69, 220, 304, 315, 389
MseI	TTAA	5 cut(s)	48, 57, 114, 215, 480
MspA1I	CMGCKG	2 cut(s)	494, 583
MspI	CCGG	1 cut(s)	238
Mva1269I	GAATGC	1 cut(s)	191
MvnI	CGCG	1 cut(s)	583
MwoI	GCNNNNNNNGC	2 cut(s)	79, 92
NarI	GGCGCC	1 cut(s)	314
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	5 cut(s)	183, 301, 311, 488, 592
NlaIV	GGNNCC	1 cut(s)	315
NspI	RCATGY	2 cut(s)	183, 592
PagI	TCATGA	2 cut(s)	307, 484
PciI	ACATGT	1 cut(s)	179
PciSI	GCTCTTC	1 cut(s)	535
PctI	GAATGC	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	493, 496
PleI	GAGTC	2 cut(s)	432, 535
PluTI	GGCGCC	1 cut(s)	317
PpsI	GAGTC	2 cut(s)	432, 535
PscI	ACATGT	1 cut(s)	179
PshAI	GACNNNNGTC	1 cut(s)	338
PspEI	GGTNACC	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	315
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	472
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	2 cut(s)	184, 268
RsaNI	GTAC	2 cut(s)	183, 267
SacII	CCGCGG	1 cut(s)	584
SapI	GCTCTTC	1 cut(s)	535
SaqAI	TTAA	5 cut(s)	48, 57, 114, 215, 480
SatI	GCNGC	2 cut(s)	492, 495
Sau3AI	GATC	1 cut(s)	472
SchI	GAGTC	2 cut(s)	432, 536
SfaNI	GCATC	1 cut(s)	478
SfcI	CTRYAG	1 cut(s)	170
SfoI	GGCGCC	1 cut(s)	315
Sfr303I	CCGCGG	1 cut(s)	584
SgrBI	CCGCGG	1 cut(s)	584
Sse9I	AATT	2 cut(s)	134, 463
SsiI	CCGC	3 cut(s)	264, 581, 583
SspDI	GGCGCC	1 cut(s)	313
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	1 cut(s)	375
TasI	AATT	2 cut(s)	134, 463
Tru1I	TTAA	5 cut(s)	48, 57, 114, 215, 480
Tru9I	TTAA	5 cut(s)	48, 57, 114, 215, 480
TscAI	CASTG	1 cut(s)	114
TseI	GCWGC	2 cut(s)	491, 494
TspDTI	ATGAA	5 cut(s)	134, 233, 261, 434, 483
TspRI	CASTG	1 cut(s)	114
XagI	CCTNNNNNAGG	1 cut(s)	246
XceI	RCATGY	2 cut(s)	183, 592
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.