Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Forward (+)

9319863 .. 9323237

Gene Structure 3375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0108500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGAAGATCAATTTCCTGTTGAATTTATCGGAGACAGGCAGTGGTGGGGGAGCAAGAACATGAGGAAGTGGAGGGAAAGAGGTAAACACGAAACTAAGCATAATAGGAGTGTCTGGAGCTCCGTCCCTAATCTTCCTGCTCCAGCTACCTTCTCTAATATCTCTGATTGGATCATTTCTCTCTTTACCAAGGAAGCTCCTGCAACAATTGAAGACTGCTTATTAATCTGTTGGCAAATTTGGGGGGCAAGGAACAACTTAGTCTTCAACAATACTCCTGCTTCCCCAAACAACATCTCTCTTGCTGCGGCCTCTATTGGTTCAAACTTCAGGAGTAACAATCAGTCCACTGCAAAGAAAGTCTCTTCCTCCACGACTTCTATTCATTGGAATTCTCCTCCGGCTAGTTATTTCAAACTCAACTTTGATGGTTTGGTCAAGAATCGCAACCCTGCAGTTGCGGGGTTCATCATCAGAGATTCTTATGGTAGCCTTCTCTTGGCGGGAGCTGCCGGCTTGGTGCTACTACAGTTCCTGTTGCTGAAGGTTGTGAGCTCAAAGATGGTTGAATTCAGGCTCTTTTGCATAATGTCTCAAGAATTCAAGTTGAGGTTCGAGACCATTTCCTTCTCCCATGTCTTTCGCGAGGCCAACTTTGTGGCGGATGCCATTGCCTCAACGGGTCATGCTCTCACTTGTCCCAAAATTTGGTTTGGTGCTGTTCCGGCTGCGGCTTCGTCCACCTTACTTCTAGATACTGTTAACCTTGGCTGTCCAAGGGGCTTTGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

264

Amino Acids

29.29

Weight (kDa)

9.45

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	708
AccII	CGCG	1 cut(s)	645
AciI	CCGC	5 cut(s)	308, 461, 503, 662, 731
AclWI	GGATC	1 cut(s)	179
AcsI	RAATTY	6 cut(s)	23, 237, 391, 569, 599, 705
AcuI	CTGAAG	2 cut(s)	313, 563
AfiI	CCNNNNNNNGG	2 cut(s)	499, 708
AgsI	TTSAA	7 cut(s)	23, 212, 268, 324, 415, 569, 604
AluBI	AGCT	5 cut(s)	120, 146, 197, 509, 555
AluI	AGCT	5 cut(s)	120, 146, 197, 509, 555
Alw21I	GWGCWC	2 cut(s)	122, 557
Alw26I	GTCTC	4 cut(s)	27, 367, 597, 611
AlwI	GGATC	1 cut(s)	179
AlwNI	CAGNNNCTG	1 cut(s)	535
AoxI	GGCC	2 cut(s)	309, 648
ApeKI	GCWGC	3 cut(s)	305, 509, 728
ApoI	RAATTY	6 cut(s)	23, 237, 391, 569, 599, 705
AseI	ATTAAT	1 cut(s)	224
BanII	GRGCYC	2 cut(s)	122, 557
BbsI	GAAGAC	2 cut(s)	219, 256
Bbv12I	GWGCWC	2 cut(s)	122, 557
BbvI	GCAGC	3 cut(s)	292, 496, 715
BccI	CCATC	2 cut(s)	422, 556
BcoDI	GTCTC	4 cut(s)	27, 367, 597, 611
BfaI	CTAG	2 cut(s)	405, 752
BfmI	CTRYAG	2 cut(s)	453, 527
BisI	GCNGC	5 cut(s)	306, 309, 510, 729, 732
BlsI	GCNGC	5 cut(s)	307, 310, 511, 730, 733
BmsI	GCATC	1 cut(s)	655
BpiI	GAAGAC	2 cut(s)	219, 256
BpmI	CTGGAG	2 cut(s)	126, 136
BpuEI	CTTGAG	1 cut(s)	579
BsaI	GGTCTC	1 cut(s)	611
BsaJI	CCNNGG	3 cut(s)	189, 766, 776
Bsc4I	CCNNNNNNNGG	2 cut(s)	499, 708
Bse118I	RCCGGY	1 cut(s)	512
Bse3DI	GCAATG	1 cut(s)	669
BseDI	CCNNGG	3 cut(s)	189, 766, 776
BseGI	GGATG	1 cut(s)	670
BseLI	CCNNNNNNNGG	2 cut(s)	499, 708
BseMI	GCAATG	1 cut(s)	669
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	3 cut(s)	292, 496, 715
Bsh1236I	CGCG	1 cut(s)	645
BshFI	GGCC	2 cut(s)	311, 650
BsiHKAI	GWGCWC	2 cut(s)	122, 557
BsiSI	CCGG	3 cut(s)	401, 513, 725
BslFI	GGGAC	2 cut(s)	110, 684
BslI	CCNNNNNNNGG	2 cut(s)	499, 708
BsmAI	GTCTC	4 cut(s)	27, 367, 597, 611
BsmFI	GGGAC	2 cut(s)	110, 684
BsnI	GGCC	2 cut(s)	311, 650
Bso31I	GGTCTC	1 cut(s)	611
Bsp1286I	GDGCHC	2 cut(s)	122, 557
Bsp143I	GATC	2 cut(s)	7, 171
Bsp68I	TCGCGA	1 cut(s)	645
BspACI	CCGC	5 cut(s)	308, 461, 503, 662, 731
BspANI	GGCC	2 cut(s)	311, 650
BspFNI	CGCG	1 cut(s)	645
BspMAI	CTGCAG	1 cut(s)	457
BspPI	GGATC	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	611
BsrDI	GCAATG	1 cut(s)	669
BsrFI	RCCGGY	1 cut(s)	512
BssAI	RCCGGY	1 cut(s)	512
BssECI	CCNNGG	3 cut(s)	189, 766, 776
BssMI	GATC	2 cut(s)	7, 171
BssT1I	CCWWGG	3 cut(s)	189, 766, 776
Bst4CI	ACNGT	2 cut(s)	531, 760
Bst6I	CTCTTC	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	2 cut(s)	96, 259
BstF5I	GGATG	1 cut(s)	670
BstFNI	CGCG	1 cut(s)	645
BstKTI	GATC	2 cut(s)	10, 174
BstMAI	GTCTC	4 cut(s)	27, 367, 597, 611
BstMBI	GATC	2 cut(s)	7, 171
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 725
BstSFI	CTRYAG	2 cut(s)	453, 527
BstUI	CGCG	1 cut(s)	645
BstV1I	GCAGC	3 cut(s)	292, 496, 715
BstV2I	GAAGAC	2 cut(s)	219, 256
BstXI	CCANNNNNNTGG	1 cut(s)	658
BsuRI	GGCC	2 cut(s)	311, 650
BtsCI	GGATG	1 cut(s)	670
BtsI	GCAGTG	2 cut(s)	47, 348
BtsIMutI	CAGTG	2 cut(s)	47, 348
BtuMI	TCGCGA	1 cut(s)	645
Cac8I	GCNNGC	1 cut(s)	514
CaiI	CAGNNNCTG	1 cut(s)	535
Cfr10I	RCCGGY	1 cut(s)	512
CviAII	CATG	3 cut(s)	61, 635, 686
DdeI	CTNAG	2 cut(s)	96, 259
DpnI	GATC	2 cut(s)	9, 173
DpnII	GATC	2 cut(s)	7, 171
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
EciI	GGCGGA	1 cut(s)	677
Ecl136II	GAGCTC	2 cut(s)	120, 555
Eco130I	CCWWGG	3 cut(s)	189, 766, 776
Eco24I	GRGCYC	2 cut(s)	122, 557
Eco31I	GGTCTC	1 cut(s)	611
Eco53kI	GAGCTC	2 cut(s)	120, 555
Eco57I	CTGAAG	2 cut(s)	313, 563
EcoICRI	GAGCTC	2 cut(s)	120, 555
EcoRI	GAATTC	3 cut(s)	391, 569, 599
EcoT14I	CCWWGG	3 cut(s)	189, 766, 776
EcoT38I	GRGCYC	2 cut(s)	122, 557
ErhI	CCWWGG	3 cut(s)	189, 766, 776
FaeI	CATG	3 cut(s)	64, 638, 689
FaiI	YATR	6 cut(s)	62, 102, 486, 587, 636, 687
FaqI	GGGAC	2 cut(s)	110, 684
FatI	CATG	3 cut(s)	60, 634, 685
FauI	CCCGC	2 cut(s)	454, 496
Fnu4HI	GCNGC	5 cut(s)	306, 309, 510, 729, 732
FokI	GGATG	1 cut(s)	677
FriOI	GRGCYC	2 cut(s)	122, 557
Fsp4HI	GCNGC	5 cut(s)	306, 309, 510, 729, 732
FspBI	CTAG	2 cut(s)	405, 752
GluI	GCNGC	5 cut(s)	306, 309, 510, 729, 732
GsuI	CTGGAG	2 cut(s)	126, 136
HaeIII	GGCC	2 cut(s)	311, 650
HapII	CCGG	3 cut(s)	401, 513, 725
Hin1II	CATG	3 cut(s)	64, 638, 689
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HinfI	GANTC	2 cut(s)	442, 479
HpaI	GTTAAC	1 cut(s)	763
HpaII	CCGG	3 cut(s)	401, 513, 725
Hpy166II	GTNNAC	4 cut(s)	86, 348, 741, 763
Hpy188I	TCNGA	3 cut(s)	32, 166, 476
Hpy188III	TCNNGA	7 cut(s)	115, 331, 439, 596, 616, 644, 752
Hpy8I	GTNNAC	4 cut(s)	86, 348, 741, 763
HpyAV	CCTTC	4 cut(s)	160, 503, 538, 637
HpyCH4III	ACNGT	2 cut(s)	531, 760
HpyCH4V	TGCA	4 cut(s)	203, 353, 455, 585
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 725
HpyF3I	CTNAG	2 cut(s)	96, 259
Hsp92II	CATG	3 cut(s)	64, 638, 689
KroI	GCCGGC	1 cut(s)	512
KroNI	GCCGGC	1 cut(s)	514
KspAI	GTTAAC	1 cut(s)	763
Kzo9I	GATC	2 cut(s)	7, 171
LmnI	GCTCC	6 cut(s)	51, 117, 125, 145, 202, 506
Lsp1109I	GCAGC	3 cut(s)	292, 496, 715
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	2 cut(s)	405, 752
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	2 cut(s)	9, 173
MboI	GATC	2 cut(s)	7, 171
MboII	GAAGA	5 cut(s)	17, 125, 224, 256, 357
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	2 cut(s)	122, 557
MluCI	AATT	8 cut(s)	11, 23, 207, 237, 391, 569, 599, 705
MnlI	CCTC	9 cut(s)	57, 66, 74, 322, 379, 408, 603, 640, 685
MroNI	GCCGGC	1 cut(s)	512
MseI	TTAA	2 cut(s)	224, 762
MspI	CCGG	3 cut(s)	401, 513, 725
MunI	CAATTG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	645
MwoI	GCNNNNNNNGC	2 cut(s)	509, 725
NaeI	GCCGGC	1 cut(s)	514
NdeII	GATC	2 cut(s)	7, 171
NgoMIV	GCCGGC	1 cut(s)	512
NlaIII	CATG	3 cut(s)	64, 638, 689
NruI	TCGCGA	1 cut(s)	645
PdiI	GCCGGC	1 cut(s)	514
PfeI	GAWTC	2 cut(s)	442, 479
PflMI	CCANNNNNTGG	1 cut(s)	708
PkrI	GCNGC	5 cut(s)	307, 310, 511, 730, 733
PshBI	ATTAAT	1 cut(s)	224
Psp124BI	GAGCTC	2 cut(s)	122, 557
PstI	CTGCAG	1 cut(s)	457
PstNI	CAGNNNCTG	1 cut(s)	535
RruI	TCGCGA	1 cut(s)	645
SacI	GAGCTC	2 cut(s)	122, 557
SaqAI	TTAA	2 cut(s)	224, 762
SatI	GCNGC	5 cut(s)	306, 309, 510, 729, 732
Sau3AI	GATC	2 cut(s)	7, 171
SduI	GDGCHC	2 cut(s)	122, 557
SfaNI	GCATC	1 cut(s)	655
SfcI	CTRYAG	2 cut(s)	453, 527
SmlI	CTYRAG	1 cut(s)	594
SmoI	CTYRAG	1 cut(s)	594
Sse9I	AATT	8 cut(s)	11, 23, 207, 237, 391, 569, 599, 705
SsiI	CCGC	5 cut(s)	308, 461, 503, 662, 731
SspMI	CTAG	2 cut(s)	405, 752
SstI	GAGCTC	2 cut(s)	122, 557
StyI	CCWWGG	3 cut(s)	189, 766, 776
TaaI	ACNGT	2 cut(s)	531, 760
TaqI	TCGA	1 cut(s)	615
TasI	AATT	8 cut(s)	11, 23, 207, 237, 391, 569, 599, 705
TauI	GCSGC	2 cut(s)	311, 734
TfiI	GAWTC	2 cut(s)	442, 479
Tru1I	TTAA	2 cut(s)	224, 762
Tru9I	TTAA	2 cut(s)	224, 762
TscAI	CASTG	2 cut(s)	47, 355
TseI	GCWGC	3 cut(s)	305, 509, 728
TspDTI	ATGAA	2 cut(s)	374, 457
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	2 cut(s)	47, 355
Van91I	CCANNNNNTGG	1 cut(s)	708
VspI	ATTAAT	1 cut(s)	224
XapI	RAATTY	6 cut(s)	23, 237, 391, 569, 599, 705
XbaI	TCTAGA	1 cut(s)	751
XspI	CTAG	2 cut(s)	405, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.