Rh6BG416800

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000746
Physical Location & Seq
Forward (+)
64191523 .. 64192336
814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG416800.1

Sequence Viewer

Length: 468 bp
ATGAACTTTGAGGTCACCATTGAACCTGATGAAGGGTACTATAACGGTGGCAGGTTTCTCTTCACATTTGAAGTTACCCCAGTCTATCCTCATGAAGCACCAAAGGTCAAGTGCGAAACAAAGGTCTATCATCCAAACATCGACTTGGAAGGGAATATCTGCCTTAACATTCTTCGTGAAGATTGGAAACCTGTCCTCAATATAAGTACTGTTATTTATGGATTGTATTACCTATTCACGGTATCCATCTCCAACTCTACATCAGTCAAGTTGTATCTGTATGTGACCTTAATGCTAACTCGAACCCTGCATTTCCTTATGCAGCAACCAAATTATGAAGATCCTTTGAATCATGAGGCAGCTGATGTTTTGAGGGATAATCCAGAGACGTTCGAATCAAATGTGAAAAGGGCAATTGCTGGTGATCAATGGATTGGAAGTACCTATTTCCCTAAACCGGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
UQ_con

Protein Analysis

155

Amino Acids

18.0

Weight (kDa)

4.88

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 1 - 82 2e-26 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 42
AclWI GGATC 1 cut(s) 335
AfaI GTAC 3 cut(s) 38, 208, 442
AfiI CCNNNNNNNGG 3 cut(s) 32, 238, 457
AgsI TTSAA 3 cut(s) 23, 71, 349
AluBI AGCT 1 cut(s) 362
AluI AGCT 1 cut(s) 362
Alw26I GTCTC 1 cut(s) 380
AlwI GGATC 1 cut(s) 335
ApeKI GCWGC 2 cut(s) 322, 359
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
AsuHPI GGTGA 2 cut(s) 7, 434
AsuII TTCGAA 1 cut(s) 393
BbvI GCAGC 2 cut(s) 334, 371
BccI CCATC 1 cut(s) 254
BciVI GTATCC 1 cut(s) 253
BclI TGATCA 1 cut(s) 424
BcoDI GTCTC 1 cut(s) 380
BfuAI ACCTGC 1 cut(s) 42
BfuI GTATCC 1 cut(s) 253
BisI GCNGC 2 cut(s) 323, 360
BlsI GCNGC 2 cut(s) 324, 361
BmcAI AGTACT 1 cut(s) 208
BmrI ACTGGG 1 cut(s) 74
BmuI ACTGGG 1 cut(s) 74
Bpu14I TTCGAA 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 457
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 238, 457
Bse1I ACTGG 1 cut(s) 80
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 3 cut(s) 32, 238, 457
BseNI ACTGG 1 cut(s) 80
BseXI GCAGC 2 cut(s) 334, 371
BsiSI CCGG 1 cut(s) 458
BslI CCNNNNNNNGG 3 cut(s) 32, 238, 457
BsmAI GTCTC 1 cut(s) 380
BsmBI CGTCTC 1 cut(s) 380
Bsp119I TTCGAA 1 cut(s) 393
Bsp143I GATC 2 cut(s) 340, 424
BspHI TCATGA 2 cut(s) 91, 352
BspMI ACCTGC 1 cut(s) 42
BspPI GGATC 1 cut(s) 335
BspT104I TTCGAA 1 cut(s) 393
BsrI ACTGG 1 cut(s) 80
BssMI GATC 2 cut(s) 340, 424
Bst4CI ACNGT 3 cut(s) 47, 211, 241
Bst6I CTCTTC 1 cut(s) 65
BstBI TTCGAA 1 cut(s) 393
BstEII GGTNACC 1 cut(s) 13
BstENI CCTNNNNNAGG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 2 cut(s) 343, 427
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 2 cut(s) 340, 424
BstPI GGTNACC 1 cut(s) 13
BstV1I GCAGC 2 cut(s) 334, 371
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuI GTATCC 1 cut(s) 253
BtsCI GGATG 1 cut(s) 130
BveI ACCTGC 1 cut(s) 42
CciI TCATGA 2 cut(s) 91, 352
Csp6I GTAC 3 cut(s) 37, 207, 441
CviAII CATG 2 cut(s) 92, 353
CviJI RGCY 1 cut(s) 362
CviKI_1 RGCY 1 cut(s) 362
CviQI GTAC 3 cut(s) 37, 207, 441
DpnI GATC 2 cut(s) 342, 426
DpnII GATC 2 cut(s) 340, 424
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco91I GGTNACC 1 cut(s) 13
EcoNI CCTNNNNNAGG 1 cut(s) 30
EcoO65I GGTNACC 1 cut(s) 13
Esp3I CGTCTC 1 cut(s) 380
FaeI CATG 2 cut(s) 95, 356
FaiI YATR 8 cut(s) 42, 93, 203, 219, 282, 320, 336, 354
FatI CATG 2 cut(s) 91, 352
FbaI TGATCA 1 cut(s) 424
Fnu4HI GCNGC 2 cut(s) 323, 360
FokI GGATG 1 cut(s) 117
Fsp4HI GCNGC 2 cut(s) 323, 360
GluI GCNGC 2 cut(s) 323, 360
HapII CCGG 1 cut(s) 458
Hin1II CATG 2 cut(s) 95, 356
HinfI GANTC 2 cut(s) 349, 395
HpaII CCGG 1 cut(s) 458
HphI GGTGA 2 cut(s) 7, 434
Hpy188III TCNNGA 4 cut(s) 92, 176, 353, 383
HpyAV CCTTC 2 cut(s) 26, 143
HpyCH4III ACNGT 3 cut(s) 47, 211, 241
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 2 cut(s) 310, 322
HpySE526I ACGT 1 cut(s) 389
Hsp92II CATG 2 cut(s) 95, 356
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 2 cut(s) 340, 424
LpnPI CCDG 7 cut(s) 37, 39, 93, 204, 320, 396, 405
Lsp1109I GCAGC 2 cut(s) 334, 371
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 3 cut(s) 13, 73, 283
MalI GATC 2 cut(s) 342, 426
MboI GATC 2 cut(s) 340, 424
MboII GAAGA 4 cut(s) 52, 164, 191, 350
MfeI CAATTG 1 cut(s) 414
MflI RGATCY 1 cut(s) 340
MluCI AATT 2 cut(s) 331, 414
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 5 cut(s) 4, 99, 206, 349, 366
MseI TTAA 2 cut(s) 165, 290
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 1 cut(s) 458
MunI CAATTG 1 cut(s) 414
NdeII GATC 2 cut(s) 340, 424
NlaIII CATG 2 cut(s) 95, 356
NmuCI GTSAC 2 cut(s) 13, 283
NspV TTCGAA 1 cut(s) 393
PagI TCATGA 2 cut(s) 91, 352
PfeI GAWTC 2 cut(s) 349, 395
PkrI GCNGC 2 cut(s) 324, 361
PspEI GGTNACC 1 cut(s) 13
PsuI RGATCY 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 3 cut(s) 38, 208, 442
RsaNI GTAC 3 cut(s) 37, 207, 441
SaqAI TTAA 2 cut(s) 165, 290
SatI GCNGC 2 cut(s) 323, 360
Sau3AI GATC 2 cut(s) 340, 424
ScaI AGTACT 1 cut(s) 208
SfuI TTCGAA 1 cut(s) 393
Sse9I AATT 2 cut(s) 331, 414
TaaI ACNGT 3 cut(s) 47, 211, 241
TaiI ACGT 1 cut(s) 392
TaqI TCGA 3 cut(s) 141, 301, 393
TasI AATT 2 cut(s) 331, 414
TatI WGTACW 1 cut(s) 206
TfiI GAWTC 2 cut(s) 349, 395
Tru1I TTAA 2 cut(s) 165, 290
Tru9I TTAA 2 cut(s) 165, 290
TseFI GTSAC 2 cut(s) 13, 283
TseI GCWGC 2 cut(s) 322, 359
Tsp45I GTSAC 2 cut(s) 13, 283
TspDTI ATGAA 4 cut(s) 17, 45, 108, 351
XagI CCTNNNNNAGG 1 cut(s) 30
ZrmI AGTACT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.