Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Reverse (-)

13569343 .. 13570904

Gene Structure 1562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017160

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGATTAGGCTTTTTAAGGTAAAGGAAAAGCAAAAGGAACTTGCTGAAGCCAATGGAGGATCACCCCTTAAGAGGCAAAGCGCTGGAGAATTGCGCCTTCATAAAGATATATCTGAGTTGAATCTACCAAAGTCTTGTGCAATATCATTTCCCAATGGCAAGGATGATCTTATGAACTTTGAGGTTTCAATTAAACCAGATGAAGGATACTATACAGGTGGTAAGTTTTTGTTTTCTTTTGAAGTTTCACCTATCTATCCACATGAGGCACCAAAAGTCAAGTGTAAGACCAAGGTCTACCATCCTAATATTGACTTGGAAGGAAATGTCTGCCTCAACATCCTACGAGAAGATTGGAAACCTGTCCTTAATATAAACACCATCGTTTATGGATTATATCATCTTTTCACGGAACCAAATCACGAAGATCCCCTAAACCATGATGCAGCTGCAGTGTTGAGAGACAACCCGAAGATGTTTGAGTCTAATGTAAGAAGGGCTATGACTGGTGGATATGTGGGGCAGACCTTATTCCCAAGATGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

183

Amino Acids

20.68

Weight (kDa)

7.69

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	32 - 167	2.5e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	297
AclWI	GGATC	2 cut(s)	67, 422
AcuI	CTGAAG	1 cut(s)	66
AfeI	AGCGCT	1 cut(s)	82
AfiI	CCNNNNNNNGG	2 cut(s)	72, 203
AflII	CTTAAG	1 cut(s)	68
AgsI	TTSAA	3 cut(s)	121, 189, 242
AluBI	AGCT	1 cut(s)	449
AluI	AGCT	1 cut(s)	449
Alw26I	GTCTC	1 cut(s)	456
AlwI	GGATC	2 cut(s)	67, 422
Aor51HI	AGCGCT	1 cut(s)	82
ApeKI	GCWGC	2 cut(s)	446, 449
AspLEI	GCGC	2 cut(s)	83, 96
AsuHPI	GGTGA	2 cut(s)	54, 240
BanI	GGYRCC	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	436, 458
BccI	CCATC	2 cut(s)	309, 389
BciVI	GTATCC	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	456
BfmI	CTRYAG	1 cut(s)	450
BfoI	RGCGCY	1 cut(s)	84
BfrI	CTTAAG	1 cut(s)	68
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	2 cut(s)	447, 450
BlsI	GCNGC	2 cut(s)	448, 451
BmiI	GGNNCC	2 cut(s)	270, 414
BmsI	GCATC	2 cut(s)	433, 530
BoxI	GACNNNNGTC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 203
Bse1I	ACTGG	1 cut(s)	511
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	3 cut(s)	169, 301, 339
BseLI	CCNNNNNNNGG	2 cut(s)	72, 203
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	511
BseXI	GCAGC	2 cut(s)	436, 458
BshNI	GGYRCC	1 cut(s)	268
BslI	CCNNNNNNNGG	2 cut(s)	72, 203
BsmAI	GTCTC	1 cut(s)	456
Bsp143I	GATC	3 cut(s)	59, 166, 427
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	270, 414
BspMAI	CTGCAG	1 cut(s)	454
BspPI	GGATC	2 cut(s)	67, 422
BspT107I	GGYRCC	1 cut(s)	268
BspTI	CTTAAG	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	511
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	3 cut(s)	59, 166, 427
BssT1I	CCWWGG	1 cut(s)	291
BstAFI	CTTAAG	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	3 cut(s)	169, 301, 339
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	2 cut(s)	83, 96
BstKTI	GATC	3 cut(s)	62, 169, 430
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	3 cut(s)	59, 166, 427
BstPAI	GACNNNNGTC	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	450
BstV1I	GCAGC	2 cut(s)	436, 458
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuI	GTATCC	1 cut(s)	200
BtsCI	GGATG	3 cut(s)	169, 301, 339
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	1 cut(s)	459
CfoI	GCGC	2 cut(s)	83, 96
CviAII	CATG	2 cut(s)	263, 440
CviJI	RGCY	4 cut(s)	10, 50, 449, 500
CviKI_1	RGCY	4 cut(s)	10, 50, 449, 500
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	3 cut(s)	61, 168, 429
DpnII	GATC	3 cut(s)	59, 166, 427
Eco130I	CCWWGG	1 cut(s)	291
Eco47III	AGCGCT	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	545
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	2 cut(s)	266, 443
FatI	CATG	2 cut(s)	262, 439
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	2 cut(s)	447, 450
FokI	GGATG	3 cut(s)	176, 288, 326
Fsp4HI	GCNGC	2 cut(s)	447, 450
GlaI	GCGC	2 cut(s)	82, 95
GluI	GCNGC	2 cut(s)	447, 450
GsuI	CTGGAG	1 cut(s)	105
HaeII	RGCGCY	1 cut(s)	84
HhaI	GCGC	2 cut(s)	83, 96
Hin1II	CATG	2 cut(s)	266, 443
Hin6I	GCGC	2 cut(s)	81, 94
HinP1I	GCGC	2 cut(s)	81, 94
HinfI	GANTC	2 cut(s)	121, 482
HphI	GGTGA	2 cut(s)	54, 240
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	1 cut(s)	115
Hpy188III	TCNNGA	1 cut(s)	422
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	4 cut(s)	107, 197, 314, 489
HpyCH4V	TGCA	4 cut(s)	140, 446, 452, 543
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	266, 443
HspAI	GCGC	2 cut(s)	81, 94
Kzo9I	GATC	3 cut(s)	59, 166, 427
LpnPI	CCDG	5 cut(s)	69, 201, 210, 375, 492
Lsp1109I	GCAGC	2 cut(s)	436, 458
LweI	GCATC	2 cut(s)	433, 530
MalI	GATC	3 cut(s)	61, 168, 429
MboI	GATC	3 cut(s)	59, 166, 427
MboII	GAAGA	3 cut(s)	362, 437, 484
MflI	RGATCY	1 cut(s)	427
MluCI	AATT	2 cut(s)	89, 189
MlyI	GAGTC	1 cut(s)	491
MnlI	CCTC	5 cut(s)	50, 66, 175, 259, 344
Mph1103I	ATGCAT	1 cut(s)	545
MseI	TTAA	4 cut(s)	15, 69, 192, 369
MspA1I	CMGCKG	1 cut(s)	449
MspCI	CTTAAG	1 cut(s)	68
NdeII	GATC	3 cut(s)	59, 166, 427
NlaIII	CATG	2 cut(s)	266, 443
NlaIV	GGNNCC	2 cut(s)	270, 414
NsiI	ATGCAT	1 cut(s)	545
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	448, 451
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PshAI	GACNNNNGTC	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	270, 414
PstI	CTGCAG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	449
SaqAI	TTAA	4 cut(s)	15, 69, 192, 369
SatI	GCNGC	2 cut(s)	447, 450
Sau3AI	GATC	3 cut(s)	59, 166, 427
SchI	GAGTC	1 cut(s)	491
SetI	ASST	8 cut(s)	21, 186, 220, 253, 297, 364, 451, 530
SfaNI	GCATC	2 cut(s)	433, 530
SfcI	CTRYAG	1 cut(s)	450
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	2 cut(s)	89, 189
SspI	AATATT	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	291
TasI	AATT	2 cut(s)	89, 189
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	4 cut(s)	15, 69, 192, 369
Tru9I	TTAA	4 cut(s)	15, 69, 192, 369
TscAI	CASTG	1 cut(s)	459
TseI	GCWGC	2 cut(s)	446, 449
TspDTI	ATGAA	3 cut(s)	89, 188, 216
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	1 cut(s)	459
Vha464I	CTTAAG	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	297
Zsp2I	ATGCAT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.