Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Reverse (-)

8752975 .. 8753895

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g12180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAAGGATATTACAAGCGGTGTGTTTATGTTTACGTTCCAAGTTGCCACTATCTATCCACATGAGGCACCAAAAGTCAAGTGTAAGACCAAGGTCTACCATCCGAATATTGACTTGGAAGGAAATGTCTGCCTCAACATCCTACGTGAAGATTGGAAACCTGTCCTCAATATAAACACTATCATTTATGGATTATATCACCTCTTCACGGAACCAAATTATGAAGATCCACTAAATCATGATGCAGCTGCAGTGTTAAGAGACAACCCGAAGATGTTTGAAGCTAATGTAAGAAGGGCTATGGCCGGTGGGTATGTGGGGCAAACCTTATTCCCCCGGTGCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

116

Amino Acids

13.16

Weight (kDa)

6.89

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	6 - 100	2.4e-33	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	1 cut(s)	18
AclWI	GGATC	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	281
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	2 cut(s)	248, 284
AluI	AGCT	2 cut(s)	248, 284
Alw21I	GWGCWC	1 cut(s)	344
Alw26I	GTCTC	1 cut(s)	255
Alw44I	GTGCAC	1 cut(s)	340
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	303
ApaLI	GTGCAC	1 cut(s)	340
ApeKI	GCWGC	2 cut(s)	245, 248
AsuC2I	CCSGG	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	344
BbvI	GCAGC	2 cut(s)	235, 257
BccI	CCATC	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	2 cut(s)	246, 249
BlsI	GCNGC	2 cut(s)	247, 250
Bme1390I	CCNGG	1 cut(s)	337
BmiI	GGNNCC	2 cut(s)	69, 213
BmrFI	CCNGG	1 cut(s)	337
BmsI	GCATC	1 cut(s)	232
BoxI	GACNNNNGTC	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	337
BsaAI	YACGTR	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	90, 335
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse118I	RCCGGY	1 cut(s)	305
BseDI	CCNNGG	2 cut(s)	90, 335
BseGI	GGATG	2 cut(s)	100, 138
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseSI	GKGCMC	1 cut(s)	344
BseXI	GCAGC	2 cut(s)	235, 257
BshFI	GGCC	1 cut(s)	305
BshNI	GGYRCC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	344
BsiSI	CCGG	2 cut(s)	306, 337
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	305
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	69, 213
BspMAI	CTGCAG	1 cut(s)	253
BspPI	GGATC	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	305
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	90, 335
BssMI	GATC	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	90
Bst6I	CTCTTC	1 cut(s)	209
BstBAI	YACGTR	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	100, 138
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	1 cut(s)	226
BstPAI	GACNNNNGTC	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	335
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	344
BstV1I	GCAGC	2 cut(s)	235, 257
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	305
BtsCI	GGATG	2 cut(s)	100, 138
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	258
CciI	TCATGA	1 cut(s)	238
Cfr10I	RCCGGY	1 cut(s)	305
CviAII	CATG	2 cut(s)	62, 239
CviJI	RGCY	4 cut(s)	248, 284, 299, 305
CviKI_1	RGCY	4 cut(s)	248, 284, 299, 305
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	65, 242
FatI	CATG	2 cut(s)	61, 238
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	246, 249
FokI	GGATG	2 cut(s)	87, 125
Fsp4HI	GCNGC	2 cut(s)	246, 249
GluI	GCNGC	2 cut(s)	246, 249
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	2 cut(s)	306, 337
Hin1II	CATG	2 cut(s)	65, 242
HpaII	CCGG	2 cut(s)	306, 337
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	3 cut(s)	33, 97, 342
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	3 cut(s)	33, 97, 342
HpyAV	CCTTC	2 cut(s)	113, 288
HpyCH4IV	ACGT	2 cut(s)	35, 145
HpyCH4V	TGCA	3 cut(s)	245, 251, 342
HpySE526I	ACGT	2 cut(s)	35, 145
Hsp92II	CATG	2 cut(s)	65, 242
Kzo9I	GATC	1 cut(s)	226
LpnPI	CCDG	2 cut(s)	174, 319
Lsp1109I	GCAGC	2 cut(s)	235, 257
LweI	GCATC	1 cut(s)	232
MaeII	ACGT	2 cut(s)	35, 145
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	4 cut(s)	161, 196, 236, 283
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	344
MluCI	AATT	1 cut(s)	217
MnlI	CCTC	4 cut(s)	58, 143, 176, 212
MseI	TTAA	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	2 cut(s)	306, 337
MspR9I	CCNGG	1 cut(s)	337
NciI	CCSGG	1 cut(s)	337
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	2 cut(s)	65, 242
NlaIV	GGNNCC	2 cut(s)	69, 213
PagI	TCATGA	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	247, 250
Ppu21I	YACGTR	1 cut(s)	146
PshAI	GACNNNNGTC	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	69, 213
PstI	CTGCAG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	2 cut(s)	246, 249
Sau3AI	GATC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	337
SduI	GDGCHC	1 cut(s)	344
SetI	ASST	8 cut(s)	38, 96, 148, 163, 204, 250, 286, 329
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	249
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	1 cut(s)	18
SspI	AATATT	1 cut(s)	109
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	90
TaiI	ACGT	2 cut(s)	38, 148
TasI	AATT	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	1 cut(s)	258
TseI	GCWGC	2 cut(s)	245, 248
TspDTI	ATGAA	2 cut(s)	17, 237
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	1 cut(s)	258
VneI	GTGCAC	1 cut(s)	340
XmiI	GTMKAC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.