Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Forward (+)

16093446 .. 16096677

Gene Structure 3232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G148800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGACAAGAGATATGATTAGGCTATTCAAAGTAAAGGAGAAGCAGAGAGAACTTGCTGAAAATGCCAATGGAGCGTCACATGTTAAGAAGCAATCTGCTGGGGAATTACGTCTTCATAAAGATATATCTGAGCTGAATCTACCAAAATCTTGTAACATTTCTTTTCCTAATGGCAAGGATGAGCTGATGAACTTTGAGGTTACAATTCGTCCAGATGAAGGCTTTTACTCAGGTGGTACATTTTCGTTTACTTTCCAAGTTGCCCCTATCTATCCACATGAGGCACCAAAAGTCAAGTGTAAGACCAAGGTCTACCATCCTAATATTGACTTGGAAGGGAATGTCTGCCTCAACATCCTACGAGAAGATTGGAAACCTGTCCTTAATATAAACACTGTCATCTATGGATTGTATCATCTTTTCACGGAACCAAATTATGAAGATCCCCTAAATCACGATGCAGCTGCAGTGTTGAGAGATAATCCTAAGATGTTCGAGTCTAATGTAAGAAGGGCTATGGCTGGTGGGTATGTGGGGCAAACCCTCTTCCCAAGGTGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

188

Amino Acids

21.35

Weight (kDa)

7.69

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	283
AccI	GTMKAC	1 cut(s)	312
AclWI	GGATC	1 cut(s)	437
AfaI	GTAC	1 cut(s)	238
AfiI	CCNNNNNNNGG	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	28
AluBI	AGCT	3 cut(s)	133, 184, 464
AluI	AGCT	3 cut(s)	133, 184, 464
AlwI	GGATC	1 cut(s)	437
ApeKI	GCWGC	2 cut(s)	461, 464
BanI	GGYRCC	1 cut(s)	283
BbsI	GAAGAC	1 cut(s)	104
BbvI	GCAGC	2 cut(s)	451, 473
BccI	CCATC	1 cut(s)	324
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BfmI	CTRYAG	1 cut(s)	465
BisI	GCNGC	2 cut(s)	462, 465
BlsI	GCNGC	2 cut(s)	463, 466
BmiI	GGNNCC	2 cut(s)	285, 429
BmsI	GCATC	1 cut(s)	448
BoxI	GACNNNNGTC	1 cut(s)	308
BpiI	GAAGAC	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	306, 551
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	306, 551
BseGI	GGATG	3 cut(s)	184, 316, 354
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	2 cut(s)	120, 243
BseXI	GCAGC	2 cut(s)	451, 473
BseYI	CCCAGC	1 cut(s)	98
BshNI	GGYRCC	1 cut(s)	283
BslI	CCNNNNNNNGG	1 cut(s)	218
Bsp143I	GATC	1 cut(s)	442
BspCNI	CTCAG	2 cut(s)	121, 242
BspLI	GGNNCC	2 cut(s)	285, 429
BspMAI	CTGCAG	1 cut(s)	469
BspPI	GGATC	1 cut(s)	437
BspT107I	GGYRCC	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	306, 551
BssMI	GATC	1 cut(s)	442
BssT1I	CCWWGG	2 cut(s)	306, 551
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	551
BstDEI	CTNAG	3 cut(s)	129, 229, 486
BstF5I	GGATG	3 cut(s)	184, 316, 354
BstKTI	GATC	1 cut(s)	445
BstMBI	GATC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 71
BstNSI	RCATGY	1 cut(s)	83
BstPAI	GACNNNNGTC	1 cut(s)	308
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	2 cut(s)	451, 473
BstV2I	GAAGAC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BtsCI	GGATG	3 cut(s)	184, 316, 354
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	2 cut(s)	393, 474
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	2 cut(s)	80, 278
CviJI	RGCY	7 cut(s)	22, 133, 184, 222, 464, 515, 521
CviKI_1	RGCY	7 cut(s)	22, 133, 184, 222, 464, 515, 521
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	3 cut(s)	129, 229, 486
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	551
EarI	CTCTTC	1 cut(s)	551
Eco130I	CCWWGG	2 cut(s)	306, 551
EcoT14I	CCWWGG	2 cut(s)	306, 551
ErhI	CCWWGG	2 cut(s)	306, 551
FaeI	CATG	2 cut(s)	83, 281
FatI	CATG	2 cut(s)	79, 277
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	2 cut(s)	462, 465
FokI	GGATG	3 cut(s)	191, 303, 341
Fsp4HI	GCNGC	2 cut(s)	462, 465
GluI	GCNGC	2 cut(s)	462, 465
GsaI	CCCAGC	1 cut(s)	102
HgaI	GACGC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	83, 281
HinfI	GANTC	2 cut(s)	136, 497
Hpy166II	GTNNAC	2 cut(s)	249, 313
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	2 cut(s)	212, 455
Hpy8I	GTNNAC	2 cut(s)	249, 313
HpyAV	CCTTC	3 cut(s)	212, 329, 504
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	3 cut(s)	461, 467, 558
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 71
HpyF3I	CTNAG	3 cut(s)	129, 229, 486
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	2 cut(s)	83, 281
Kzo9I	GATC	1 cut(s)	442
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	5 cut(s)	84, 216, 225, 390, 507
Lsp1109I	GCAGC	2 cut(s)	451, 473
LweI	GCATC	1 cut(s)	448
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	3 cut(s)	75, 152, 199
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	4 cut(s)	104, 377, 452, 538
MflI	RGATCY	1 cut(s)	442
MluCI	AATT	3 cut(s)	104, 204, 433
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	4 cut(s)	190, 274, 359, 554
MseI	TTAA	2 cut(s)	84, 384
MspA1I	CMGCKG	1 cut(s)	464
MwoI	GCNNNNNNNGC	2 cut(s)	62, 71
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	2 cut(s)	83, 281
NlaIV	GGNNCC	2 cut(s)	285, 429
NmuCI	GTSAC	1 cut(s)	75
NspI	RCATGY	1 cut(s)	83
PciI	ACATGT	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	463, 466
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PscI	ACATGT	1 cut(s)	79
PshAI	GACNNNNGTC	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	285, 429
PstI	CTGCAG	1 cut(s)	469
PsuI	RGATCY	1 cut(s)	442
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	84, 384
SatI	GCNGC	2 cut(s)	462, 465
Sau3AI	GATC	1 cut(s)	442
SchI	GAGTC	1 cut(s)	506
SetI	ASST	9 cut(s)	112, 135, 186, 201, 235, 312, 379, 466, 557
SfaNI	GCATC	1 cut(s)	448
SfcI	CTRYAG	1 cut(s)	465
Sse9I	AATT	3 cut(s)	104, 204, 433
SspI	AATATT	1 cut(s)	325
StyI	CCWWGG	2 cut(s)	306, 551
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	495
TasI	AATT	3 cut(s)	104, 204, 433
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	2 cut(s)	84, 384
Tru9I	TTAA	2 cut(s)	84, 384
TscAI	CASTG	2 cut(s)	400, 474
TseFI	GTSAC	1 cut(s)	75
TseI	GCWGC	2 cut(s)	461, 464
Tsp45I	GTSAC	1 cut(s)	75
TspDTI	ATGAA	4 cut(s)	104, 203, 231, 453
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	2 cut(s)	400, 474
XceI	RCATGY	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.