Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Forward (+)

7149869 .. 7153619

Gene Structure 3751 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATTAAGCTATTTAAAGTGAAGGAAAAGCAGAGGGAGCTTGCTGAAAATGCCAATGGAAAGACACTGGTTAAGAAGCAAAGTGCAGGAGAATTACGGCTTCACAGAGACATTAGTGAGCTGAACCTACAGAAAACATGTACCATAGCATTCCCCAATGGCAAGGACGATTTAATGAACTTTGAGGTTGCTGTCCGGCCTGATGAAGGATACTATCAAGGCGGTACATTTATGTTCACATTTCAAGTTTCTCCCATGTACCCTCATGAGGCGCCAAAGGTCAAGTGCAAGACAAAGGTCTATCATCCTAACATCGACTTGGAAGGAAATGTCTGCCTCAACATTTTAAGAGAAGACTGGAAACCTGTTTTGAATATCAACACTATTATATACGGACTCTTTCATCTCTTTACGCAACCCAATTATGAAGATCCCCTTAATCATGATGCAGCTGTTGTTCTAAGGGACAACCCTAAGATGTTTGAGTCCAATGTGAGACGAGCTATGTCTGGAGGGTATGTGGGGCAGACCTTATTCCCACGCTGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

184

Amino Acids

21.04

Weight (kDa)

8.61

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	33 - 168	1e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	271
AciI	CCGC	1 cut(s)	222
AclWI	GGATC	1 cut(s)	425
AcyI	GRCGYC	1 cut(s)	272
AfaI	GTAC	3 cut(s)	142, 226, 260
AfiI	CCNNNNNNNGG	2 cut(s)	206, 268
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	245, 373
AluBI	AGCT	5 cut(s)	10, 40, 121, 452, 503
AluI	AGCT	5 cut(s)	10, 40, 121, 452, 503
Alw26I	GTCTC	2 cut(s)	102, 490
AlwI	GGATC	1 cut(s)	425
AoxI	GGCC	1 cut(s)	197
ApeKI	GCWGC	2 cut(s)	449, 543
AspLEI	GCGC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	461, 530
BceAI	ACGGC	1 cut(s)	113
BciVI	GTATCC	1 cut(s)	203
BcoDI	GTCTC	2 cut(s)	102, 490
BfmI	CTRYAG	1 cut(s)	128
BfoI	RGCGCY	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	203
BisI	GCNGC	2 cut(s)	450, 544
BlsI	GCNGC	2 cut(s)	451, 545
BmiI	GGNNCC	1 cut(s)	273
BmsI	GCATC	1 cut(s)	436
BoxI	GACNNNNGTC	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 268
Bse1I	ACTGG	2 cut(s)	72, 362
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	2 cut(s)	206, 268
BseNI	ACTGG	2 cut(s)	72, 362
BseXI	GCAGC	2 cut(s)	461, 530
BsgI	GTGCAG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	199
BshNI	GGYRCC	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	479
BslI	CCNNNNNNNGG	2 cut(s)	206, 268
BsmAI	GTCTC	2 cut(s)	102, 490
BsmBI	CGTCTC	1 cut(s)	490
BsmFI	GGGAC	1 cut(s)	479
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	430
BspACI	CCGC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	199
BspHI	TCATGA	2 cut(s)	265, 442
BspLI	GGNNCC	1 cut(s)	273
BspPI	GGATC	1 cut(s)	425
BspT107I	GGYRCC	1 cut(s)	271
BsrI	ACTGG	2 cut(s)	72, 362
BssMI	GATC	1 cut(s)	430
BssNI	GRCGYC	1 cut(s)	272
BstACI	GRCGYC	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	461, 474
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	304
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	1 cut(s)	433
BstMAI	GTCTC	2 cut(s)	102, 490
BstMBI	GATC	1 cut(s)	430
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 50
BstNSI	RCATGY	2 cut(s)	141, 550
BstPAI	GACNNNNGTC	1 cut(s)	296
BstSFI	CTRYAG	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	461, 530
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	42
CciI	TCATGA	2 cut(s)	265, 442
CfoI	GCGC	1 cut(s)	274
Csp6I	GTAC	3 cut(s)	141, 225, 259
CviAII	CATG	5 cut(s)	138, 256, 266, 443, 547
CviJI	RGCY	7 cut(s)	10, 40, 100, 121, 199, 452, 503
CviKI_1	RGCY	7 cut(s)	10, 40, 100, 121, 199, 452, 503
CviQI	GTAC	3 cut(s)	141, 225, 259
DdeI	CTNAG	2 cut(s)	461, 474
DinI	GGCGCC	1 cut(s)	273
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
DraI	TTTAAA	1 cut(s)	16
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EgeI	GGCGCC	1 cut(s)	273
EheI	GGCGCC	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	490
FaeI	CATG	5 cut(s)	141, 259, 269, 446, 550
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	5 cut(s)	137, 255, 265, 442, 546
Fnu4HI	GCNGC	2 cut(s)	450, 544
FokI	GGATG	1 cut(s)	291
Fsp4HI	GCNGC	2 cut(s)	450, 544
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	2 cut(s)	450, 544
GsuI	CTGGAG	1 cut(s)	531
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	1 cut(s)	196
HhaI	GCGC	1 cut(s)	274
Hin1I	GRCGYC	1 cut(s)	272
Hin1II	CATG	5 cut(s)	141, 259, 269, 446, 550
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HinfI	GANTC	2 cut(s)	396, 485
HpaII	CCGG	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188III	TCNNGA	3 cut(s)	266, 443, 510
Hpy8I	GTNNAC	1 cut(s)	237
HpyAV	CCTTC	3 cut(s)	16, 200, 317
HpyCH4V	TGCA	4 cut(s)	86, 288, 449, 546
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 50
HpyF3I	CTNAG	2 cut(s)	461, 474
Hsp92I	GRCGYC	1 cut(s)	272
Hsp92II	CATG	5 cut(s)	141, 259, 269, 446, 550
HspAI	GCGC	1 cut(s)	272
KasI	GGCGCC	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	430
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	7 cut(s)	53, 72, 209, 213, 343, 378, 495
Lsp1109I	GCAGC	2 cut(s)	461, 530
LweI	GCATC	1 cut(s)	436
MalI	GATC	1 cut(s)	432
MboI	GATC	1 cut(s)	430
MboII	GAAGA	2 cut(s)	365, 440
MflI	RGATCY	1 cut(s)	430
MluCI	AATT	2 cut(s)	92, 421
Mly113I	GGCGCC	1 cut(s)	272
MlyI	GAGTC	2 cut(s)	390, 494
MnlI	CCTC	6 cut(s)	27, 178, 262, 273, 347, 506
MseI	TTAA	6 cut(s)	6, 15, 72, 173, 347, 438
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	1 cut(s)	196
Mva1269I	GAATGC	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	37, 50
NarI	GGCGCC	1 cut(s)	272
NdeII	GATC	1 cut(s)	430
NlaIII	CATG	5 cut(s)	141, 259, 269, 446, 550
NlaIV	GGNNCC	1 cut(s)	273
NspI	RCATGY	2 cut(s)	141, 550
PagI	TCATGA	2 cut(s)	265, 442
PciI	ACATGT	1 cut(s)	137
PctI	GAATGC	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	451, 545
PleI	GAGTC	2 cut(s)	390, 493
PluTI	GGCGCC	1 cut(s)	275
PpsI	GAGTC	2 cut(s)	390, 493
PscI	ACATGT	1 cut(s)	137
PshAI	GACNNNNGTC	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	430
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	3 cut(s)	142, 226, 260
RsaNI	GTAC	3 cut(s)	141, 225, 259
SaqAI	TTAA	6 cut(s)	6, 15, 72, 173, 347, 438
SatI	GCNGC	2 cut(s)	450, 544
Sau3AI	GATC	1 cut(s)	430
SchI	GAGTC	2 cut(s)	390, 494
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	1 cut(s)	128
SfoI	GGCGCC	1 cut(s)	273
Sse9I	AATT	2 cut(s)	92, 421
SsiI	CCGC	1 cut(s)	222
SspDI	GGCGCC	1 cut(s)	271
TaqI	TCGA	1 cut(s)	315
TasI	AATT	2 cut(s)	92, 421
Tru1I	TTAA	6 cut(s)	6, 15, 72, 173, 347, 438
Tru9I	TTAA	6 cut(s)	6, 15, 72, 173, 347, 438
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	2 cut(s)	449, 543
TspDTI	ATGAA	4 cut(s)	191, 219, 392, 441
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	1 cut(s)	72
XagI	CCTNNNNNAGG	1 cut(s)	204
XceI	RCATGY	2 cut(s)	141, 550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.