Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Reverse (-)

34413456 .. 34415651

Gene Structure 2196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G383000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGATCAGGCTATTTAAAGTTAAAGAAAAGCAAAAGGAAATCGAAGAAAATGTGAAGGAGAAGGGCCTAGTCAAGAAGCAAAGTGCAGGGGAATTACGTCTTCATAGAGACATAAGTGAGTTGAACCTACCCAAAGCATGTGAAATATCTTTCCCTAATGGAAAGAACGATCTGATGAACTTTGAGGTCACCATTGAACCGGACGAGGGATATTATACTGGTGGCAGGTTTGTCTTCTCATTTCATGTTCCCATTATCTACCCTCATGAAGCTCCAAAGGTCAAGTGTGAAACAAAGATCTATCATCCCAACATTGACTTGGAAGGGAATGTTTGTCTTAACATTCTTCGAGAAGATTGGAAACCTGTCCTCAACATAAACACTGTTATTTATGGATTGTCTCACCTATTCACGCAACCCAATTATGAGGATCCCTTGAACCATGAGGCAGCTGATGTTTTGAGGGATGATCCAGGGTTGTTTGTATCAAATGTGAGAAAAGCAATTGATGGTCGTCAATGGGTGGGAACCGACTATTTCCCCGGGTGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

185

Amino Acids

21.17

Weight (kDa)

5.71

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	216
AclWI	GGATC	3 cut(s)	425, 438, 464
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	3 cut(s)	124, 197, 439
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	2 cut(s)	272, 452
AluI	AGCT	2 cut(s)	272, 452
Alw26I	GTCTC	2 cut(s)	102, 405
AlwI	GGATC	3 cut(s)	425, 438, 464
Ama87I	CYCGRG	1 cut(s)	542
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	449
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	2 cut(s)	543, 544
AsuHPI	GGTGA	2 cut(s)	181, 395
AvaI	CYCGRG	1 cut(s)	542
BamHI	GGATCC	1 cut(s)	430
BbsI	GAAGAC	2 cut(s)	92, 226
BbvI	GCAGC	1 cut(s)	461
BccI	CCATC	1 cut(s)	503
BciT130I	CCWGG	1 cut(s)	474
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	2 cut(s)	543, 544
BcoDI	GTCTC	2 cut(s)	102, 405
BfaI	CTAG	1 cut(s)	68
BfuAI	ACCTGC	1 cut(s)	216
BglII	AGATCT	1 cut(s)	297
BisI	GCNGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	451
Bme1390I	CCNGG	3 cut(s)	474, 543, 544
BmeT110I	CYCGRG	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	432, 529
BmrFI	CCNGG	3 cut(s)	474, 543, 544
BpiI	GAAGAC	2 cut(s)	92, 226
BpuMI	CCSGG	2 cut(s)	543, 544
BsaJI	CCNNGG	3 cut(s)	473, 541, 542
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	3 cut(s)	473, 541, 542
BseGI	GGATG	2 cut(s)	304, 472
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseNI	ACTGG	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	461
BsgI	GTGCAG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	2 cut(s)	200, 543
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	102, 405
BsnI	GGCC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	542
Bsp143I	GATC	5 cut(s)	3, 169, 297, 430, 469
BspANI	GGCC	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	432, 529
BspMI	ACCTGC	1 cut(s)	216
BspPI	GGATC	3 cut(s)	425, 438, 464
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	3 cut(s)	473, 541, 542
BssMI	GATC	5 cut(s)	3, 169, 297, 430, 469
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	385
BstEII	GGTNACC	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	304, 472
BstKTI	GATC	5 cut(s)	6, 172, 300, 433, 472
BstMAI	GTCTC	2 cut(s)	102, 405
BstMBI	GATC	5 cut(s)	3, 169, 297, 430, 469
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	1 cut(s)	141
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	3 cut(s)	472, 541, 542
BstV1I	GCAGC	1 cut(s)	461
BstV2I	GAAGAC	2 cut(s)	92, 226
BstX2I	RGATCY	2 cut(s)	297, 430
BstYI	RGATCY	2 cut(s)	297, 430
BsuRI	GGCC	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	304, 472
BtsIMutI	CAGTG	1 cut(s)	381
BveI	ACCTGC	1 cut(s)	216
CciI	TCATGA	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	64
Cfr9I	CCCGGG	1 cut(s)	542
CviAII	CATG	4 cut(s)	138, 245, 266, 443
CviJI	RGCY	4 cut(s)	10, 66, 272, 452
CviKI_1	RGCY	4 cut(s)	10, 66, 272, 452
DpnI	GATC	5 cut(s)	5, 171, 299, 432, 471
DpnII	GATC	5 cut(s)	3, 169, 297, 430, 469
DraI	TTTAAA	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	542
Eco91I	GGTNACC	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	64
EcoO65I	GGTNACC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	472
FaeI	CATG	4 cut(s)	141, 248, 269, 446
FatI	CATG	4 cut(s)	137, 244, 265, 442
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	450
FokI	GGATG	2 cut(s)	291, 479
Fsp4HI	GCNGC	1 cut(s)	450
FspBI	CTAG	1 cut(s)	68
GluI	GCNGC	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	2 cut(s)	200, 543
Hin1II	CATG	4 cut(s)	141, 248, 269, 446
HpaII	CCGG	2 cut(s)	200, 543
HphI	GGTGA	2 cut(s)	181, 395
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	3 cut(s)	73, 266, 350
HpyAV	CCTTC	3 cut(s)	49, 55, 317
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	2 cut(s)	86, 549
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	4 cut(s)	141, 248, 269, 446
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 169, 297, 430, 469
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	7 cut(s)	72, 204, 211, 213, 378, 459, 486
Lsp1109I	GCAGC	1 cut(s)	461
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	5 cut(s)	5, 171, 299, 432, 471
MboI	GATC	5 cut(s)	3, 169, 297, 430, 469
MboII	GAAGA	5 cut(s)	56, 92, 226, 338, 365
MfeI	CAATTG	2 cut(s)	504, 550
MflI	RGATCY	2 cut(s)	297, 430
MluCI	AATT	4 cut(s)	92, 421, 504, 550
MnlI	CCTC	7 cut(s)	178, 199, 273, 380, 421, 439, 456
MseI	TTAA	3 cut(s)	15, 21, 339
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	2 cut(s)	200, 543
MspR9I	CCNGG	3 cut(s)	474, 543, 544
MunI	CAATTG	2 cut(s)	504, 550
MvaI	CCWGG	1 cut(s)	474
NciI	CCSGG	2 cut(s)	543, 544
NdeII	GATC	5 cut(s)	3, 169, 297, 430, 469
NlaIII	CATG	4 cut(s)	141, 248, 269, 446
NlaIV	GGNNCC	2 cut(s)	432, 529
NmuCI	GTSAC	1 cut(s)	187
NspI	RCATGY	1 cut(s)	141
PagI	TCATGA	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	472
PspEI	GGTNACC	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	2 cut(s)	432, 529
PspPI	GGNCC	1 cut(s)	64
PsuI	RGATCY	2 cut(s)	297, 430
PvuII	CAGCTG	1 cut(s)	452
SaqAI	TTAA	3 cut(s)	15, 21, 339
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	5 cut(s)	3, 169, 297, 430, 469
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	3 cut(s)	474, 543, 544
SetI	ASST	9 cut(s)	100, 129, 189, 230, 274, 282, 367, 408, 454
SmaI	CCCGGG	1 cut(s)	544
Sse9I	AATT	4 cut(s)	92, 421, 504, 550
SspMI	CTAG	1 cut(s)	68
StyD4I	CCNGG	3 cut(s)	472, 541, 542
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	42, 349
TasI	AATT	4 cut(s)	92, 421, 504, 550
Tru1I	TTAA	3 cut(s)	15, 21, 339
Tru9I	TTAA	3 cut(s)	15, 21, 339
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	1 cut(s)	449
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	4 cut(s)	92, 191, 233, 282
TspMI	CCCGGG	1 cut(s)	542
TspRI	CASTG	1 cut(s)	388
XceI	RCATGY	1 cut(s)	141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmaI	CCCGGG	1 cut(s)	542
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.