Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Forward (+)

18163170 .. 18166763

Gene Structure 3594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG121500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGTGCAGTACAGCGGATCAGCATGCCAGCTCCTTGTCCGAAAGCGGCAAATTCCTTTTGAGCTCGAGCTCTCTCTCTTCTTCTCCTCCTCCCTTTGGCTTTGGCTTTGCTCTCTTTGCTGTTCTAAGCAGGGAAATCCTACATCTCTTTTTGCAGGGGGGACTCCCGACAGTTCAACTAGAGCCAACACAGCAAGCGGAAAAATGATTAAGCTATTTAAAGTGAAGGAAAAGCAGAGGGAGCTTGCTGAAAATGCCAATGGAAAGACACTGGTTAAGAAGCAAAGCGCAGGAGAATTACGGCTTCATAGAGATATTAGTGAGCTGAACCTACAGAAAACATGTACCATAGCATTCCCCAATGGTAAGGACGATTTAATGAACTTTGAGGTTACCGTCCGGCCTGATGAAGGATACTATCTAGGCGGTACATTTATGTTCACATTTCAAGTTTCTCCCATGTATCCTCATGAGGCGCCAAAGGTCAAGTGCAAGACAAAGGTCTATCATCCTAATATTGACTTGGAAGGAAACGTCTGCCTCAACATTCTAAGAGAAGACTGGAAACCTGTTTTGAATATCAATACTATAATATATGGACTCTTTCATCTTTTTACGCAACCCAATTATGAAGATCCCCTTAATCATGATGCAGCTGCTGTCCTAAGGGATAACCCCAAGATGTTTGAGTCCAATGTGAGAAGAGCTATGTCTGGTGGGTATGTGGGGCAGACCTTATTCCCGCGGTGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

251

Amino Acids

28.42

Weight (kDa)

8.85

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	101 - 236	4.2e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	475
AccII	CGCG	1 cut(s)	745
AciI	CCGC	6 cut(s)	15, 46, 198, 426, 743, 745
AclWI	GGATC	2 cut(s)	25, 629
AcsI	RAATTY	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	476
AfaI	GTAC	3 cut(s)	11, 346, 430
AfiI	CCNNNNNNNGG	2 cut(s)	96, 410
AflIII	ACRYGT	1 cut(s)	341
AgsI	TTSAA	3 cut(s)	177, 449, 577
AluBI	AGCT	8 cut(s)	31, 64, 70, 214, 244, 325, 656, 707
AluI	AGCT	8 cut(s)	31, 64, 70, 214, 244, 325, 656, 707
Alw21I	GWGCWC	2 cut(s)	66, 72
AlwI	GGATC	2 cut(s)	25, 629
AlwNI	CAGNNNCTG	1 cut(s)	659
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	1 cut(s)	401
ApeKI	GCWGC	2 cut(s)	653, 656
ApoI	RAATTY	1 cut(s)	51
AspLEI	GCGC	2 cut(s)	290, 478
AvaI	CYCGRG	1 cut(s)	65
AxyI	CCTNAGG	1 cut(s)	665
BanI	GGYRCC	1 cut(s)	475
BanII	GRGCYC	2 cut(s)	66, 72
BbsI	GAAGAC	1 cut(s)	564
Bbv12I	GWGCWC	2 cut(s)	66, 72
BbvI	GCAGC	2 cut(s)	643, 665
BceAI	ACGGC	1 cut(s)	317
BciVI	GTATCC	2 cut(s)	407, 474
BfaI	CTAG	2 cut(s)	180, 422
BfmI	CTRYAG	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	479
BfuI	GTATCC	2 cut(s)	407, 474
BisI	GCNGC	3 cut(s)	47, 654, 657
BlsI	GCNGC	3 cut(s)	48, 655, 658
BmeT110I	CYCGRG	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	477
BmsI	GCATC	1 cut(s)	640
BoxI	GACNNNNGTC	1 cut(s)	500
BpiI	GAAGAC	1 cut(s)	564
BsaHI	GRCGYC	1 cut(s)	476
BsaJI	CCNNGG	1 cut(s)	743
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 410
Bse1I	ACTGG	2 cut(s)	276, 566
Bse21I	CCTNAGG	1 cut(s)	665
BseDI	CCNNGG	1 cut(s)	743
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	2 cut(s)	96, 410
BseNI	ACTGG	2 cut(s)	276, 566
BseRI	GAGGAG	2 cut(s)	76, 79
BseXI	GCAGC	2 cut(s)	643, 665
BsgI	GTGCAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	745
BshFI	GGCC	1 cut(s)	403
BshNI	GGYRCC	1 cut(s)	475
BsiHKAI	GWGCWC	2 cut(s)	66, 72
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	400
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	2 cut(s)	96, 410
BsmFI	GGGAC	1 cut(s)	175
BsmI	GAATGC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	403
BsoBI	CYCGRG	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	66, 72
Bsp143I	GATC	2 cut(s)	17, 634
BspACI	CCGC	6 cut(s)	15, 46, 198, 426, 743, 745
BspANI	GGCC	1 cut(s)	403
BspFNI	CGCG	1 cut(s)	745
BspHI	TCATGA	2 cut(s)	469, 646
BspLI	GGNNCC	1 cut(s)	477
BspPI	GGATC	2 cut(s)	25, 629
BspQI	GCTCTTC	1 cut(s)	697
BspT107I	GGYRCC	1 cut(s)	475
BsrI	ACTGG	2 cut(s)	276, 566
BssECI	CCNNGG	1 cut(s)	743
BssMI	GATC	2 cut(s)	17, 634
BssNI	GRCGYC	1 cut(s)	476
Bst4CI	ACNGT	2 cut(s)	173, 397
Bst6I	CTCTTC	2 cut(s)	83, 697
BstACI	GRCGYC	1 cut(s)	476
BstC8I	GCNNGC	4 cut(s)	25, 29, 196, 246
BstDEI	CTNAG	3 cut(s)	126, 551, 665
BstDSI	CCRYGG	1 cut(s)	743
BstEII	GGTNACC	1 cut(s)	391
BstENI	CCTNNNNNAGG	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	508
BstFNI	CGCG	1 cut(s)	745
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	2 cut(s)	290, 478
BstKTI	GATC	2 cut(s)	20, 637
BstMBI	GATC	2 cut(s)	17, 634
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 191, 241, 254
BstNSI	RCATGY	3 cut(s)	27, 345, 754
BstPAI	GACNNNNGTC	1 cut(s)	500
BstPI	GGTNACC	1 cut(s)	391
BstSFI	CTRYAG	1 cut(s)	332
BstUI	CGCG	1 cut(s)	745
BstV1I	GCAGC	2 cut(s)	643, 665
BstV2I	GAAGAC	1 cut(s)	564
BstX2I	RGATCY	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	634
Bsu36I	CCTNAGG	1 cut(s)	665
BsuI	GTATCC	2 cut(s)	407, 474
BsuRI	GGCC	1 cut(s)	403
BtgI	CCRYGG	1 cut(s)	743
BtsCI	GGATG	1 cut(s)	508
BtsIMutI	CAGTG	1 cut(s)	269
Cac8I	GCNNGC	4 cut(s)	25, 29, 196, 246
CaiI	CAGNNNCTG	1 cut(s)	659
CciI	TCATGA	2 cut(s)	469, 646
CfoI	GCGC	2 cut(s)	290, 478
Cfr42I	CCGCGG	1 cut(s)	746
Csp6I	GTAC	3 cut(s)	10, 345, 429
CviAII	CATG	6 cut(s)	24, 342, 460, 470, 647, 751
CviQI	GTAC	3 cut(s)	10, 345, 429
DdeI	CTNAG	3 cut(s)	126, 551, 665
DinI	GGCGCC	1 cut(s)	477
DpnI	GATC	2 cut(s)	19, 636
DpnII	GATC	2 cut(s)	17, 634
DraI	TTTAAA	1 cut(s)	220
Eam1104I	CTCTTC	2 cut(s)	83, 697
EarI	CTCTTC	2 cut(s)	83, 697
Ecl136II	GAGCTC	2 cut(s)	64, 70
Eco24I	GRGCYC	2 cut(s)	66, 72
Eco53kI	GAGCTC	2 cut(s)	64, 70
Eco81I	CCTNAGG	1 cut(s)	665
Eco88I	CYCGRG	1 cut(s)	65
Eco91I	GGTNACC	1 cut(s)	391
EcoICRI	GAGCTC	2 cut(s)	64, 70
EcoNI	CCTNNNNNAGG	1 cut(s)	408
EcoO65I	GGTNACC	1 cut(s)	391
EcoT38I	GRGCYC	2 cut(s)	66, 72
EgeI	GGCGCC	1 cut(s)	477
EheI	GGCGCC	1 cut(s)	477
FaeI	CATG	6 cut(s)	27, 345, 463, 473, 650, 754
FalI	AAGNNNNNCTT	2 cut(s)	624, 656
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	6 cut(s)	23, 341, 459, 469, 646, 750
FauI	CCCGC	1 cut(s)	750
Fnu4HI	GCNGC	3 cut(s)	47, 654, 657
FokI	GGATG	1 cut(s)	495
FriOI	GRGCYC	2 cut(s)	66, 72
Fsp4HI	GCNGC	3 cut(s)	47, 654, 657
FspBI	CTAG	2 cut(s)	180, 422
GlaI	GCGC	2 cut(s)	289, 477
GluI	GCNGC	3 cut(s)	47, 654, 657
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	1 cut(s)	403
HapII	CCGG	1 cut(s)	400
HhaI	GCGC	2 cut(s)	290, 478
Hin1I	GRCGYC	1 cut(s)	476
Hin1II	CATG	6 cut(s)	27, 345, 463, 473, 650, 754
Hin6I	GCGC	2 cut(s)	288, 476
HinP1I	GCGC	2 cut(s)	288, 476
HinfI	GANTC	3 cut(s)	163, 600, 689
HpaII	CCGG	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	3 cut(s)	167, 470, 647
Hpy8I	GTNNAC	1 cut(s)	441
HpyAV	CCTTC	3 cut(s)	220, 404, 521
HpyCH4III	ACNGT	2 cut(s)	173, 397
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	5 cut(s)	7, 155, 492, 653, 750
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 191, 241, 254
HpyF3I	CTNAG	3 cut(s)	126, 551, 665
HpySE526I	ACGT	1 cut(s)	534
Hsp92I	GRCGYC	1 cut(s)	476
Hsp92II	CATG	6 cut(s)	27, 345, 463, 473, 650, 754
HspAI	GCGC	2 cut(s)	288, 476
KasI	GGCGCC	1 cut(s)	475
KspI	CCGCGG	1 cut(s)	746
Kzo9I	GATC	2 cut(s)	17, 634
LguI	GCTCTTC	1 cut(s)	697
LmnI	GCTCC	2 cut(s)	36, 241
Lsp1109I	GCAGC	2 cut(s)	643, 665
LweI	GCATC	1 cut(s)	640
MaeI	CTAG	2 cut(s)	180, 422
MaeII	ACGT	1 cut(s)	534
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	2 cut(s)	19, 636
MboI	GATC	2 cut(s)	17, 634
MboII	GAAGA	5 cut(s)	70, 73, 569, 644, 714
MflI	RGATCY	1 cut(s)	634
MhlI	GDGCHC	2 cut(s)	66, 72
MluCI	AATT	3 cut(s)	51, 296, 625
Mly113I	GGCGCC	1 cut(s)	476
MlyI	GAGTC	3 cut(s)	157, 594, 698
MnlI	CCTC	7 cut(s)	97, 100, 231, 382, 466, 477, 551
MseI	TTAA	5 cut(s)	210, 219, 276, 377, 642
MspA1I	CMGCKG	3 cut(s)	15, 656, 745
MspI	CCGG	1 cut(s)	400
Mva1269I	GAATGC	1 cut(s)	353
MvnI	CGCG	1 cut(s)	745
MwoI	GCNNNNNNNGC	4 cut(s)	117, 191, 241, 254
NarI	GGCGCC	1 cut(s)	476
NdeII	GATC	2 cut(s)	17, 634
NlaIII	CATG	6 cut(s)	27, 345, 463, 473, 650, 754
NlaIV	GGNNCC	1 cut(s)	477
NspI	RCATGY	3 cut(s)	27, 345, 754
PaeI	GCATGC	1 cut(s)	27
PaeR7I	CTCGAG	1 cut(s)	65
PagI	TCATGA	2 cut(s)	469, 646
PciI	ACATGT	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	697
PctI	GAATGC	1 cut(s)	353
PkrI	GCNGC	3 cut(s)	48, 655, 658
PleI	GAGTC	3 cut(s)	157, 594, 697
PluTI	GGCGCC	1 cut(s)	479
PpsI	GAGTC	3 cut(s)	157, 594, 697
PscI	ACATGT	1 cut(s)	341
PshAI	GACNNNNGTC	1 cut(s)	500
Psp124BI	GAGCTC	2 cut(s)	66, 72
PspEI	GGTNACC	1 cut(s)	391
PspN4I	GGNNCC	1 cut(s)	477
PspXI	VCTCGAGB	1 cut(s)	65
PstNI	CAGNNNCTG	1 cut(s)	659
PsuI	RGATCY	1 cut(s)	634
PvuII	CAGCTG	1 cut(s)	656
RsaI	GTAC	3 cut(s)	11, 346, 430
RsaNI	GTAC	3 cut(s)	10, 345, 429
SacI	GAGCTC	2 cut(s)	66, 72
SacII	CCGCGG	1 cut(s)	746
SapI	GCTCTTC	1 cut(s)	697
SaqAI	TTAA	5 cut(s)	210, 219, 276, 377, 642
SatI	GCNGC	3 cut(s)	47, 654, 657
Sau3AI	GATC	2 cut(s)	17, 634
SchI	GAGTC	3 cut(s)	157, 594, 698
SduI	GDGCHC	2 cut(s)	66, 72
SfaNI	GCATC	1 cut(s)	640
SfcI	CTRYAG	1 cut(s)	332
SfoI	GGCGCC	1 cut(s)	477
Sfr274I	CTCGAG	1 cut(s)	65
Sfr303I	CCGCGG	1 cut(s)	746
SgrBI	CCGCGG	1 cut(s)	746
SlaI	CTCGAG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	3 cut(s)	51, 296, 625
SsiI	CCGC	6 cut(s)	15, 46, 198, 426, 743, 745
SspDI	GGCGCC	1 cut(s)	475
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	2 cut(s)	180, 422
SstI	GAGCTC	2 cut(s)	66, 72
TaaI	ACNGT	2 cut(s)	173, 397
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	1 cut(s)	66
TasI	AATT	3 cut(s)	51, 296, 625
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	1 cut(s)	49
Tru1I	TTAA	5 cut(s)	210, 219, 276, 377, 642
Tru9I	TTAA	5 cut(s)	210, 219, 276, 377, 642
TscAI	CASTG	1 cut(s)	276
TseI	GCWGC	2 cut(s)	653, 656
TspDTI	ATGAA	5 cut(s)	296, 395, 423, 596, 645
TspRI	CASTG	1 cut(s)	276
XagI	CCTNNNNNAGG	1 cut(s)	408
XapI	RAATTY	1 cut(s)	51
XceI	RCATGY	3 cut(s)	27, 345, 754
XhoI	CTCGAG	1 cut(s)	65
XspI	CTAG	2 cut(s)	180, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.