Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Reverse (-)

23234660 .. 23237610

Gene Structure 2951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1268600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCCATTGGAGCCTCGCCATTTACGAAGCAGTCTGCTGGGAAATTGCGTCTTAATAAAGGAGTTTGAGTATATGTCTGAGCTGAATTTACCAAAATCTTGTAGCATTCATTATCCTGATGGCAAGGATGAGCTGATGAACTTTGAGGTTACAATTCGTCCTGATGAAGGATATTACAAAGGTGGTGTGTTTTTGTTTACGTTCCAAGTTGCCCCTATCTACCCACATGAAGCACCAAAAGTCAAGTGTAAGACCAAGGTCTACCATCCGAATATTGACTTGGAAGGAAATGTTTGCCTCAACATCCTACGAGAAGATTGGAAACCTGTCCTCAATATAAACACTATCATTTATGGACTATATCATCTCTTCACGGAACCAAATTATGAAGATCCACTAAATCATGATGCAGCTGCAGTGTTGAGAGACAACCCAAAGATGTTTGAATCTAATGTAAGAAGGGCCATGGCCGGTGGGTATGTGGGGCAAACCTTGTTCCCCCGGTGCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

171

Amino Acids

19.57

Weight (kDa)

6.06

Isoelectric Point (pI)

57.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	26 - 155	4.8e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	261
AclWI	GGATC	1 cut(s)	386
AcoI	YGGCCR	1 cut(s)	468
AcsI	RAATTY	1 cut(s)	85
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	446
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	3 cut(s)	82, 133, 413
AluI	AGCT	3 cut(s)	82, 133, 413
Alw21I	GWGCWC	1 cut(s)	509
Alw26I	GTCTC	1 cut(s)	420
Alw44I	GTGCAC	1 cut(s)	505
AlwI	GGATC	1 cut(s)	386
AoxI	GGCC	2 cut(s)	462, 468
ApaLI	GTGCAC	1 cut(s)	505
ApeKI	GCWGC	2 cut(s)	410, 413
ApoI	RAATTY	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	462
AsuC2I	CCSGG	1 cut(s)	502
BaeGI	GKGCMC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	509
BbvI	GCAGC	2 cut(s)	400, 422
BccI	CCATC	2 cut(s)	113, 273
BcnI	CCSGG	1 cut(s)	502
BcoDI	GTCTC	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	414
BisI	GCNGC	2 cut(s)	411, 414
BlsI	GCNGC	2 cut(s)	412, 415
Bme1390I	CCNGG	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	462
BmiI	GGNNCC	2 cut(s)	12, 378
BmrFI	CCNGG	1 cut(s)	502
BmsI	GCATC	1 cut(s)	397
BoxI	GACNNNNGTC	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	502
BsaJI	CCNNGG	3 cut(s)	255, 465, 500
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	470
BseDI	CCNNGG	3 cut(s)	255, 465, 500
BseGI	GGATG	3 cut(s)	133, 265, 303
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	509
BseXI	GCAGC	2 cut(s)	400, 422
BseYI	CCCAGC	1 cut(s)	37
BshFI	GGCC	2 cut(s)	464, 470
BsiHKAI	GWGCWC	1 cut(s)	509
BsiSI	CCGG	2 cut(s)	471, 502
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	420
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	2 cut(s)	464, 470
Bsp1286I	GDGCHC	1 cut(s)	509
Bsp143I	GATC	1 cut(s)	391
Bsp19I	CCATGG	1 cut(s)	465
BspANI	GGCC	2 cut(s)	464, 470
BspCNI	CTCAG	1 cut(s)	70
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	12, 378
BspMAI	CTGCAG	1 cut(s)	418
BspPI	GGATC	1 cut(s)	386
BsrFI	RCCGGY	1 cut(s)	470
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	3 cut(s)	255, 465, 500
BssMI	GATC	1 cut(s)	391
BssT1I	CCWWGG	2 cut(s)	255, 465
Bst6I	CTCTTC	1 cut(s)	374
BstDEI	CTNAG	1 cut(s)	78
BstDSI	CCRYGG	1 cut(s)	465
BstENI	CCTNNNNNAGG	1 cut(s)	165
BstF5I	GGATG	3 cut(s)	133, 265, 303
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstPAI	GACNNNNGTC	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	500
BstSFI	CTRYAG	1 cut(s)	414
BstSLI	GKGCMC	1 cut(s)	509
BstV1I	GCAGC	2 cut(s)	400, 422
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	2 cut(s)	464, 470
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	3 cut(s)	133, 265, 303
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	423
CciI	TCATGA	1 cut(s)	403
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	462
CseI	GACGC	1 cut(s)	37
CviAII	CATG	3 cut(s)	227, 404, 466
CviJI	RGCY	6 cut(s)	13, 82, 133, 413, 464, 470
CviKI_1	RGCY	6 cut(s)	13, 82, 133, 413, 464, 470
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
EaeI	YGGCCR	1 cut(s)	468
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
Eco130I	CCWWGG	2 cut(s)	255, 465
EcoNI	CCTNNNNNAGG	1 cut(s)	165
EcoT14I	CCWWGG	2 cut(s)	255, 465
ErhI	CCWWGG	2 cut(s)	255, 465
FaeI	CATG	3 cut(s)	230, 407, 469
FatI	CATG	3 cut(s)	226, 403, 465
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	411, 414
FokI	GGATG	3 cut(s)	140, 252, 290
Fsp4HI	GCNGC	2 cut(s)	411, 414
GluI	GCNGC	2 cut(s)	411, 414
GsaI	CCCAGC	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	464, 470
HapII	CCGG	2 cut(s)	471, 502
HgaI	GACGC	1 cut(s)	37
Hin1II	CATG	3 cut(s)	230, 407, 469
HinfI	GANTC	1 cut(s)	446
HpaII	CCGG	2 cut(s)	471, 502
Hpy166II	GTNNAC	3 cut(s)	198, 262, 507
Hpy188I	TCNGA	2 cut(s)	79, 270
Hpy188III	TCNNGA	3 cut(s)	116, 161, 404
Hpy8I	GTNNAC	3 cut(s)	198, 262, 507
HpyAV	CCTTC	3 cut(s)	161, 278, 453
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	3 cut(s)	410, 416, 507
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	1 cut(s)	200
Hsp92II	CATG	3 cut(s)	230, 407, 469
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	5 cut(s)	23, 129, 174, 339, 484
Lsp1109I	GCAGC	2 cut(s)	400, 422
LweI	GCATC	1 cut(s)	397
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	3 cut(s)	326, 361, 401
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	509
MluCI	AATT	4 cut(s)	43, 85, 153, 382
MnlI	CCTC	4 cut(s)	24, 139, 308, 341
MseI	TTAA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	2 cut(s)	471, 502
MspR9I	CCNGG	1 cut(s)	502
Mva1269I	GAATGC	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	502
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	3 cut(s)	230, 407, 469
NlaIV	GGNNCC	2 cut(s)	12, 378
PagI	TCATGA	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	22
PctI	GAATGC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	446
PkrI	GCNGC	2 cut(s)	412, 415
PshAI	GACNNNNGTC	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	37
PspN4I	GGNNCC	2 cut(s)	12, 378
PspPI	GGNCC	1 cut(s)	462
PstI	CTGCAG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	2 cut(s)	411, 414
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	1 cut(s)	462
ScrFI	CCNGG	1 cut(s)	502
SduI	GDGCHC	1 cut(s)	509
SetI	ASST	9 cut(s)	84, 135, 150, 184, 203, 261, 328, 415, 494
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	414
Sse9I	AATT	4 cut(s)	43, 85, 153, 382
SspI	AATATT	1 cut(s)	274
StyD4I	CCNGG	1 cut(s)	500
StyI	CCWWGG	2 cut(s)	255, 465
TaiI	ACGT	1 cut(s)	203
TasI	AATT	4 cut(s)	43, 85, 153, 382
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	1 cut(s)	423
TseI	GCWGC	2 cut(s)	410, 413
TspDTI	ATGAA	5 cut(s)	98, 152, 180, 243, 402
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	1 cut(s)	423
VneI	GTGCAC	1 cut(s)	505
XagI	CCTNNNNNAGG	1 cut(s)	165
XapI	RAATTY	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.