Rmu_sc0000596.1_g000075

NEDD8-conjugating enzyme Ubc12-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000596.1
Physical Location & Seq
Forward (+)
380903 .. 387007
6105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000596.1_g000075.1.cds

Sequence Viewer

Length: 1077 bp
atgcgcaaatgcactagtaccaagattccttttgagctcgagctctctctcttctcctcctcctcccgttggctttggctttgctctctttgctgttctaagcagggaaatcctacatctctttttgcaggggggactcccgacagttcaactagagccaacacagcaagcggaaaaatgattaagctatttaaagtgaaggaaaagcagagggagcttgctgaaaatgccaatggaaagacactggttaagaagcaaagcgcaggagaattacggcttcatagagatattagtgagctgaacctacagaaaacatgtaccatagcattccccaatggtaaggacgatttaatgaactttgaggttaccgtccggcctgatgaaggatactatctaggcggtacatttatgttcacatttcaagtttctcccatgtatcctcatgaggcgccaaaggtcaagtgcaagacaaaggtctatcatcctaatattgacttggaaggaaacgtctgcctcaacattctaagagaagactggaaacctgttttgaatatcaatactataatatatggactctttcatctttttacgcaacccaattatgaagatccccttaatcatgatgcagctgctgtcctaagggataaccccaagatgtttgagtccaatgtgagaagagctatgtctggtgggtatgtggggcagaccttattcccgcggaccatagttatagcagtacatggaaatgcaacattgcagacccaaacgaccaactttggaacatggaaccctggcaaatatgggaatcaagagatatctggatcttcaggaacatcaaacaacgtcctgtcaaggctgcctctgtttgcaagctcaaggaatattggcagaactggggtgcatcttgtgagcttcatgctccctgtgaaggttacagccatgaacgacaattgctcggagattatgatagaagttgactccaagactatcactgattatgttagtaggagctgctctagtatccctttggagattaacatccattgtcaaagatctcaagcatctgttccaagatga

Protein Analysis

358

Amino Acids

39.9

Weight (kDa)

9.02

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 448
AccII CGCG 1 cut(s) 718
AciI CCGC 4 cut(s) 171, 399, 716, 718
AclWI GGATC 2 cut(s) 602, 829
AcuI CTGAAG 1 cut(s) 810
AcyI GRCGYC 1 cut(s) 449
AfaI GTAC 4 cut(s) 19, 319, 403, 738
AfiI CCNNNNNNNGG 3 cut(s) 69, 383, 928
AflIII ACRYGT 1 cut(s) 314
AgsI TTSAA 3 cut(s) 150, 422, 550
AhlI ACTAGT 1 cut(s) 14
AjnI CCWGG 1 cut(s) 790
Alw21I GWGCWC 2 cut(s) 39, 45
AlwI GGATC 2 cut(s) 602, 829
AlwNI CAGNNNCTG 1 cut(s) 632
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 1 cut(s) 374
ApeKI GCWGC 4 cut(s) 626, 629, 856, 1011
AspLEI GCGC 3 cut(s) 6, 263, 451
AspS9I GGNCC 1 cut(s) 720
AvaI CYCGRG 1 cut(s) 38
AvaII GGWCC 1 cut(s) 720
AxyI CCTNAGG 1 cut(s) 638
BanI GGYRCC 1 cut(s) 448
BanII GRGCYC 2 cut(s) 39, 45
BbsI GAAGAC 1 cut(s) 537
Bbv12I GWGCWC 2 cut(s) 39, 45
BbvI GCAGC 4 cut(s) 616, 638, 843, 998
BceAI ACGGC 1 cut(s) 290
BciT130I CCWGG 1 cut(s) 792
BciVI GTATCC 3 cut(s) 380, 447, 1031
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 4 cut(s) 15, 153, 395, 1017
BfmI CTRYAG 1 cut(s) 305
BfoI RGCGCY 1 cut(s) 452
BfuI GTATCC 3 cut(s) 380, 447, 1031
BglII AGATCT 1 cut(s) 1052
BisI GCNGC 4 cut(s) 627, 630, 857, 1012
BlsI GCNGC 4 cut(s) 628, 631, 858, 1013
Bme1390I CCNGG 1 cut(s) 792
Bme18I GGWCC 1 cut(s) 720
BmeT110I CYCGRG 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 720
BmiI GGNNCC 2 cut(s) 450, 788
BmrFI CCNGG 1 cut(s) 792
BmrI ACTGGG 1 cut(s) 903
BmsI GCATC 3 cut(s) 613, 910, 1070
BmuI ACTGGG 1 cut(s) 903
BoxI GACNNNNGTC 1 cut(s) 473
BpiI GAAGAC 1 cut(s) 537
BpuEI CTTGAG 2 cut(s) 859, 1041
BsaBI GATNNNNATC 1 cut(s) 1037
BsaHI GRCGYC 1 cut(s) 449
BsaJI CCNNGG 2 cut(s) 716, 790
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 383, 928
Bse1I ACTGG 3 cut(s) 249, 539, 898
Bse21I CCTNAGG 1 cut(s) 638
Bse3DI GCAATG 1 cut(s) 752
Bse8I GATNNNNATC 1 cut(s) 1037
BseBI CCWGG 1 cut(s) 792
BseDI CCNNGG 2 cut(s) 716, 790
BseGI GGATG 2 cut(s) 481, 1038
BseJI GATNNNNATC 1 cut(s) 1037
BseLI CCNNNNNNNGG 3 cut(s) 69, 383, 928
BseMI GCAATG 1 cut(s) 752
BseNI ACTGG 3 cut(s) 249, 539, 898
BseRI GAGGAG 3 cut(s) 46, 49, 52
BseXI GCAGC 4 cut(s) 616, 638, 843, 998
Bsh1236I CGCG 1 cut(s) 718
BshFI GGCC 1 cut(s) 376
BshNI GGYRCC 1 cut(s) 448
BsiHKAI GWGCWC 2 cut(s) 39, 45
BsiHKCI CYCGRG 1 cut(s) 38
BsiSI CCGG 1 cut(s) 373
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 3 cut(s) 69, 383, 928
BsmFI GGGAC 1 cut(s) 148
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 1 cut(s) 376
BsoBI CYCGRG 1 cut(s) 38
Bsp1286I GDGCHC 2 cut(s) 39, 45
Bsp143I GATC 3 cut(s) 607, 821, 1052
BspACI CCGC 4 cut(s) 171, 399, 716, 718
BspANI GGCC 1 cut(s) 376
BspFNI CGCG 1 cut(s) 718
BspHI TCATGA 2 cut(s) 442, 619
BspLI GGNNCC 2 cut(s) 450, 788
BspPI GGATC 2 cut(s) 602, 829
BspQI GCTCTTC 1 cut(s) 670
BspT107I GGYRCC 1 cut(s) 448
BsrDI GCAATG 1 cut(s) 752
BsrI ACTGG 3 cut(s) 249, 539, 898
BssECI CCNNGG 2 cut(s) 716, 790
BssMI GATC 3 cut(s) 607, 821, 1052
BssNI GRCGYC 1 cut(s) 449
Bst2UI CCWGG 1 cut(s) 792
Bst4CI ACNGT 2 cut(s) 146, 370
Bst6I CTCTTC 2 cut(s) 56, 670
BstACI GRCGYC 1 cut(s) 449
BstC8I GCNNGC 3 cut(s) 169, 219, 871
BstDEI CTNAG 3 cut(s) 99, 524, 638
BstDSI CCRYGG 1 cut(s) 716
BstEII GGTNACC 1 cut(s) 364
BstENI CCTNNNNNAGG 1 cut(s) 381
BstF5I GGATG 2 cut(s) 481, 1038
BstFNI CGCG 1 cut(s) 718
BstH2I RGCGCY 1 cut(s) 452
BstHHI GCGC 3 cut(s) 6, 263, 451
BstKTI GATC 3 cut(s) 610, 824, 1055
BstMBI GATC 3 cut(s) 607, 821, 1052
BstMWI GCNNNNNNNGC 4 cut(s) 90, 164, 214, 227
BstNI CCWGG 1 cut(s) 792
BstNSI RCATGY 1 cut(s) 318
BstPAI GACNNNNGTC 1 cut(s) 473
BstPI GGTNACC 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 790
BstSFI CTRYAG 1 cut(s) 305
BstUI CGCG 1 cut(s) 718
BstV1I GCAGC 4 cut(s) 616, 638, 843, 998
BstV2I GAAGAC 1 cut(s) 537
BstX2I RGATCY 3 cut(s) 607, 821, 1052
BstYI RGATCY 3 cut(s) 607, 821, 1052
Bsu36I CCTNAGG 1 cut(s) 638
BsuI GTATCC 3 cut(s) 380, 447, 1031
BsuRI GGCC 1 cut(s) 376
BtgI CCRYGG 1 cut(s) 716
BtsCI GGATG 2 cut(s) 481, 1038
BtsIMutI CAGTG 2 cut(s) 242, 990
Cac8I GCNNGC 3 cut(s) 169, 219, 871
CaiI CAGNNNCTG 1 cut(s) 632
CciI TCATGA 2 cut(s) 442, 619
CfoI GCGC 3 cut(s) 6, 263, 451
Cfr13I GGNCC 1 cut(s) 720
Cfr42I CCGCGG 1 cut(s) 719
Csp6I GTAC 4 cut(s) 18, 318, 402, 737
CviAII CATG 8 cut(s) 315, 433, 443, 620, 740, 783, 916, 940
CviQI GTAC 4 cut(s) 18, 318, 402, 737
DdeI CTNAG 3 cut(s) 99, 524, 638
DinI GGCGCC 1 cut(s) 450
DpnI GATC 3 cut(s) 609, 823, 1054
DpnII GATC 3 cut(s) 607, 821, 1052
DraI TTTAAA 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 56, 670
EarI CTCTTC 2 cut(s) 56, 670
Ecl136II GAGCTC 2 cut(s) 37, 43
Eco24I GRGCYC 2 cut(s) 39, 45
Eco32I GATATC 1 cut(s) 816
Eco47I GGWCC 1 cut(s) 720
Eco53kI GAGCTC 2 cut(s) 37, 43
Eco57I CTGAAG 1 cut(s) 810
Eco81I CCTNAGG 1 cut(s) 638
Eco88I CYCGRG 1 cut(s) 38
Eco91I GGTNACC 1 cut(s) 364
EcoICRI GAGCTC 2 cut(s) 37, 43
EcoNI CCTNNNNNAGG 1 cut(s) 381
EcoO65I GGTNACC 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 790
EcoRV GATATC 1 cut(s) 816
EcoT38I GRGCYC 2 cut(s) 39, 45
EgeI GGCGCC 1 cut(s) 450
EheI GGCGCC 1 cut(s) 450
FaeI CATG 8 cut(s) 318, 436, 446, 623, 743, 786, 919, 943
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FaqI GGGAC 1 cut(s) 148
FatI CATG 8 cut(s) 314, 432, 442, 619, 739, 782, 915, 939
FauI CCCGC 1 cut(s) 723
Fnu4HI GCNGC 4 cut(s) 627, 630, 857, 1012
FokI GGATG 2 cut(s) 468, 1025
FriOI GRGCYC 2 cut(s) 39, 45
Fsp4HI GCNGC 4 cut(s) 627, 630, 857, 1012
FspBI CTAG 4 cut(s) 15, 153, 395, 1017
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 3 cut(s) 5, 262, 450
GluI GCNGC 4 cut(s) 627, 630, 857, 1012
HaeII RGCGCY 1 cut(s) 452
HaeIII GGCC 1 cut(s) 376
HapII CCGG 1 cut(s) 373
HhaI GCGC 3 cut(s) 6, 263, 451
Hin1I GRCGYC 1 cut(s) 449
Hin1II CATG 8 cut(s) 318, 436, 446, 623, 743, 786, 919, 943
Hin6I GCGC 3 cut(s) 4, 261, 449
HinP1I GCGC 3 cut(s) 4, 261, 449
HincII GTYRAC 1 cut(s) 976
HindII GTYRAC 1 cut(s) 976
HinfI GANTC 6 cut(s) 25, 136, 573, 662, 805, 977
HpaII CCGG 1 cut(s) 373
Hpy166II GTNNAC 2 cut(s) 414, 976
Hpy188I TCNGA 1 cut(s) 958
Hpy188III TCNNGA 6 cut(s) 140, 443, 620, 809, 819, 828
Hpy8I GTNNAC 2 cut(s) 414, 976
HpyAV CCTTC 4 cut(s) 193, 377, 494, 922
HpyCH4III ACNGT 2 cut(s) 146, 370
HpyCH4IV ACGT 2 cut(s) 507, 843
HpyCH4V TGCA 8 cut(s) 12, 128, 465, 626, 749, 757, 869, 901
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 164, 214, 227
HpyF3I CTNAG 3 cut(s) 99, 524, 638
HpySE526I ACGT 2 cut(s) 507, 843
Hsp92I GRCGYC 1 cut(s) 449
Hsp92II CATG 8 cut(s) 318, 436, 446, 623, 743, 786, 919, 943
HspAI GCGC 3 cut(s) 4, 261, 449
KasI GGCGCC 1 cut(s) 448
KspI CCGCGG 1 cut(s) 719
Kzo9I GATC 3 cut(s) 607, 821, 1052
LguI GCTCTTC 1 cut(s) 670
LmnI GCTCC 3 cut(s) 214, 924, 1008
Lsp1109I GCAGC 4 cut(s) 616, 638, 843, 998
LweI GCATC 3 cut(s) 613, 910, 1070
MaeI CTAG 4 cut(s) 15, 153, 395, 1017
MaeII ACGT 2 cut(s) 507, 843
MaeIII GTNAC 2 cut(s) 364, 931
MalI GATC 3 cut(s) 609, 823, 1054
MboI GATC 3 cut(s) 607, 821, 1052
MboII GAAGA 5 cut(s) 43, 542, 617, 687, 816
MfeI CAATTG 1 cut(s) 949
MflI RGATCY 3 cut(s) 607, 821, 1052
MhlI GDGCHC 2 cut(s) 39, 45
MluCI AATT 3 cut(s) 269, 598, 949
Mly113I GGCGCC 1 cut(s) 449
MlyI GAGTC 4 cut(s) 130, 567, 671, 971
MnlI CCTC 9 cut(s) 67, 70, 73, 204, 355, 439, 450, 524, 870
MseI TTAA 6 cut(s) 183, 192, 249, 350, 615, 1035
MslI CAYNNNNRTG 1 cut(s) 744
MspA1I CMGCKG 2 cut(s) 629, 718
MspI CCGG 1 cut(s) 373
MspR9I CCNGG 1 cut(s) 792
MunI CAATTG 1 cut(s) 949
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 1 cut(s) 792
MvnI CGCG 1 cut(s) 718
MwoI GCNNNNNNNGC 4 cut(s) 90, 164, 214, 227
NarI GGCGCC 1 cut(s) 449
NdeII GATC 3 cut(s) 607, 821, 1052
NlaIII CATG 8 cut(s) 318, 436, 446, 623, 743, 786, 919, 943
NlaIV GGNNCC 2 cut(s) 450, 788
NsbI TGCGCA 1 cut(s) 5
NspI RCATGY 1 cut(s) 318
PaeR7I CTCGAG 1 cut(s) 38
PagI TCATGA 2 cut(s) 442, 619
PciI ACATGT 1 cut(s) 314
PciSI GCTCTTC 1 cut(s) 670
PctI GAATGC 1 cut(s) 326
PfeI GAWTC 2 cut(s) 25, 805
PkrI GCNGC 4 cut(s) 628, 631, 858, 1013
PleI GAGTC 4 cut(s) 130, 567, 670, 971
PluTI GGCGCC 1 cut(s) 452
PpsI GAGTC 4 cut(s) 130, 567, 670, 971
PscI ACATGT 1 cut(s) 314
PshAI GACNNNNGTC 1 cut(s) 473
Psp124BI GAGCTC 2 cut(s) 39, 45
Psp6I CCWGG 1 cut(s) 790
PspEI GGTNACC 1 cut(s) 364
PspGI CCWGG 1 cut(s) 790
PspN4I GGNNCC 2 cut(s) 450, 788
PspPI GGNCC 1 cut(s) 720
PspXI VCTCGAGB 1 cut(s) 38
PstNI CAGNNNCTG 1 cut(s) 632
PsuI RGATCY 3 cut(s) 607, 821, 1052
PvuII CAGCTG 1 cut(s) 629
RsaI GTAC 4 cut(s) 19, 319, 403, 738
RsaNI GTAC 4 cut(s) 18, 318, 402, 737
RseI CAYNNNNRTG 1 cut(s) 744
SacI GAGCTC 2 cut(s) 39, 45
SacII CCGCGG 1 cut(s) 719
SapI GCTCTTC 1 cut(s) 670
SaqAI TTAA 6 cut(s) 183, 192, 249, 350, 615, 1035
SatI GCNGC 4 cut(s) 627, 630, 857, 1012
Sau3AI GATC 3 cut(s) 607, 821, 1052
Sau96I GGNCC 1 cut(s) 720
SchI GAGTC 4 cut(s) 130, 567, 671, 971
ScrFI CCNGG 1 cut(s) 792
SduI GDGCHC 2 cut(s) 39, 45
SfaNI GCATC 3 cut(s) 613, 910, 1070
SfcI CTRYAG 1 cut(s) 305
SfoI GGCGCC 1 cut(s) 450
Sfr274I CTCGAG 1 cut(s) 38
Sfr303I CCGCGG 1 cut(s) 719
SgrBI CCGCGG 1 cut(s) 719
SinI GGWCC 1 cut(s) 720
SlaI CTCGAG 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 744
SmlI CTYRAG 3 cut(s) 38, 874, 1056
SmoI CTYRAG 3 cut(s) 38, 874, 1056
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 3 cut(s) 269, 598, 949
SsiI CCGC 4 cut(s) 171, 399, 716, 718
SspDI GGCGCC 1 cut(s) 448
SspI AATATT 2 cut(s) 490, 883
SspMI CTAG 4 cut(s) 15, 153, 395, 1017
SstI GAGCTC 2 cut(s) 39, 45
StyD4I CCNGG 1 cut(s) 790
TaaI ACNGT 2 cut(s) 146, 370
TaiI ACGT 2 cut(s) 510, 846
TaqI TCGA 1 cut(s) 39
TasI AATT 3 cut(s) 269, 598, 949
TatI WGTACW 1 cut(s) 736
TfiI GAWTC 2 cut(s) 25, 805
Tru1I TTAA 6 cut(s) 183, 192, 249, 350, 615, 1035
Tru9I TTAA 6 cut(s) 183, 192, 249, 350, 615, 1035
TscAI CASTG 2 cut(s) 249, 997
TseI GCWGC 4 cut(s) 626, 629, 856, 1011
TspDTI ATGAA 7 cut(s) 269, 368, 396, 569, 618, 904, 956
TspRI CASTG 2 cut(s) 249, 997
VpaK11BI GGWCC 1 cut(s) 720
XagI CCTNNNNNAGG 1 cut(s) 381
XceI RCATGY 1 cut(s) 318
XhoI CTCGAG 1 cut(s) 38
XspI CTAG 4 cut(s) 15, 153, 395, 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.