Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Reverse (-)

28744857 .. 28745504

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40311.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATTAGGCTGTTCAAAGTTAAAGAGCAGCAGAGAGAACTTGCTGAAGCCAATGGAGGAAAACATGTCAATAAGCAAACGGCTGGGCAATTGCGCCTGAACAAAGATATAACTGAGCTGAACTTACCAAAATCTTGTTCCATAATATTCCCCAATGGCAAGGACGACCTTATGAACTTTGAGGTTTCGATTAAACCAGATGAAGGATATTACACAGGCGGTAAGTTTAAGTTTTCTTTTCAACTTTCGGCTATCTATCCACACGAGGCACCTAAAGTCAAGTGTATGACAAAGTTGTACCACCCCAATATCGACTTGGAAGGGAATGTCTGCCTCAACGTTCTACGTGAAGATTGGAAGCCTGTGCTTAACATAAACACCATTATTTATGGATTGTATCATCTTTTCACTGAACCGAATCATGAAGATCCCTTAAATCATGATGCAGCTGAAGTTTTGAGAGATAACCCGAAGGAGTTTGCTAACAATGTAAGAAGGGCCATGTCTGGTGGGTATGTGGGGGAAACTTGTTTTTCTAGAAAGGTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

184

Amino Acids

20.9

Weight (kDa)

7.69

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	32 - 167	9.5e-41	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	268
AciI	CCGC	1 cut(s)	219
AclI	AACGTT	1 cut(s)	339
AclWI	GGATC	1 cut(s)	422
AcuI	CTGAAG	2 cut(s)	66, 471
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	64
AgsI	TTSAA	2 cut(s)	16, 242
AjuI	GAANNNNNNNTTGG	2 cut(s)	121, 153
AluBI	AGCT	2 cut(s)	118, 449
AluI	AGCT	2 cut(s)	118, 449
AlwI	GGATC	1 cut(s)	422
AoxI	GGCC	1 cut(s)	498
ApeKI	GCWGC	2 cut(s)	28, 446
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	498
BanI	GGYRCC	1 cut(s)	268
BauI	CACGAG	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	40, 458
BceAI	ACGGC	1 cut(s)	96
BfaI	CTAG	1 cut(s)	537
BisI	GCNGC	2 cut(s)	29, 447
BlsI	GCNGC	2 cut(s)	30, 448
BmgT120I	GGNCC	1 cut(s)	498
BmiI	GGNNCC	2 cut(s)	270, 546
BmsI	GCATC	1 cut(s)	433
BsaAI	YACGTR	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	40, 458
BseYI	CCCAGC	1 cut(s)	83
BshFI	GGCC	1 cut(s)	500
BshNI	GGYRCC	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	203
BsnI	GGCC	1 cut(s)	500
Bsp143I	GATC	1 cut(s)	427
BspACI	CCGC	1 cut(s)	219
BspANI	GGCC	1 cut(s)	500
BspCNI	CTCAG	1 cut(s)	106
BspHI	TCATGA	2 cut(s)	421, 439
BspLI	GGNNCC	2 cut(s)	270, 546
BspPI	GGATC	1 cut(s)	422
BspT107I	GGYRCC	1 cut(s)	268
BssMI	GATC	1 cut(s)	427
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
BstBAI	YACGTR	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	1 cut(s)	430
BstMBI	GATC	1 cut(s)	427
BstNSI	RCATGY	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	40, 458
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	500
BtsIMutI	CAGTG	1 cut(s)	408
CciI	TCATGA	2 cut(s)	421, 439
CfoI	GCGC	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	498
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	4 cut(s)	65, 422, 440, 502
CviJI	RGCY	8 cut(s)	10, 50, 83, 118, 251, 361, 449, 500
CviKI_1	RGCY	8 cut(s)	10, 50, 83, 118, 251, 361, 449, 500
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
Eco57I	CTGAAG	2 cut(s)	66, 471
FaeI	CATG	4 cut(s)	68, 425, 443, 505
FatI	CATG	4 cut(s)	64, 421, 439, 501
Fnu4HI	GCNGC	2 cut(s)	29, 447
Fsp4HI	GCNGC	2 cut(s)	29, 447
FspBI	CTAG	1 cut(s)	537
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	2 cut(s)	29, 447
GsaI	CCCAGC	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	500
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	4 cut(s)	68, 425, 443, 505
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	1 cut(s)	418
Hpy188III	TCNNGA	3 cut(s)	422, 440, 537
HpyAV	CCTTC	4 cut(s)	197, 314, 466, 489
HpyCH4IV	ACGT	2 cut(s)	339, 346
HpyCH4V	TGCA	1 cut(s)	446
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	2 cut(s)	339, 346
Hsp92II	CATG	4 cut(s)	68, 425, 443, 505
HspAI	GCGC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	427
LpnPI	CCDG	6 cut(s)	69, 110, 201, 210, 375, 492
Lsp1109I	GCAGC	2 cut(s)	40, 458
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	537
MaeII	ACGT	2 cut(s)	339, 346
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	2 cut(s)	362, 437
MfeI	CAATTG	1 cut(s)	89
MflI	RGATCY	1 cut(s)	427
MluCI	AATT	1 cut(s)	89
MnlI	CCTC	4 cut(s)	50, 175, 259, 344
MseI	TTAA	6 cut(s)	21, 192, 228, 369, 434, 550
MspA1I	CMGCKG	1 cut(s)	449
MunI	CAATTG	1 cut(s)	89
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	4 cut(s)	68, 425, 443, 505
NlaIV	GGNNCC	2 cut(s)	270, 546
NspI	RCATGY	1 cut(s)	68
PagI	TCATGA	2 cut(s)	421, 439
PciI	ACATGT	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	418
PkrI	GCNGC	2 cut(s)	30, 448
Ppu21I	YACGTR	1 cut(s)	347
PscI	ACATGT	1 cut(s)	64
Psp1406I	AACGTT	1 cut(s)	339
PspFI	CCCAGC	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	270, 546
PspPI	GGNCC	1 cut(s)	498
PsuI	RGATCY	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	6 cut(s)	21, 192, 228, 369, 434, 550
SatI	GCNGC	2 cut(s)	29, 447
Sau3AI	GATC	1 cut(s)	427
Sau96I	GGNCC	1 cut(s)	498
SetI	ASST	8 cut(s)	120, 171, 186, 274, 342, 349, 451, 546
SfaNI	GCATC	1 cut(s)	433
Sse9I	AATT	1 cut(s)	89
SsiI	CCGC	1 cut(s)	219
SspI	AATATT	1 cut(s)	147
SspMI	CTAG	1 cut(s)	537
TaiI	ACGT	2 cut(s)	342, 349
TaqI	TCGA	2 cut(s)	188, 312
TasI	AATT	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	6 cut(s)	21, 192, 228, 369, 434, 550
Tru9I	TTAA	6 cut(s)	21, 192, 228, 369, 434, 550
TscAI	CASTG	1 cut(s)	415
TseI	GCWGC	2 cut(s)	28, 446
TspDTI	ATGAA	3 cut(s)	188, 216, 438
TspRI	CASTG	1 cut(s)	415
XbaI	TCTAGA	1 cut(s)	536
XceI	RCATGY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.