Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Reverse (-)

2469935 .. 2471414

Gene Structure 1480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1035500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTATGAAACCATGATTAGATTGTTTAAAGTGAAAGAAAAGCAAAAGGAAACAGCTGAAAACGCAAAGGAGAATGATCTCGTAAAGAAGCAAAGTGCAGGCGAATTGCGTCTTCATAGAGATATAAGTGAGTTGAACATGCCAGAAGAATGCAAGATTTCATTCCCCAATGGAAAGGATGATTTGATGGACTTTGAGATTACCATTACACCTTATCGGGGATATTATATGGGTGGTGGGTTTGTCTTCACGTTTAAAGTTCCCGCAGTCTACCCTCATGAGCCTTCGAAGGTCAAGTGCAAAACCAAGATCTACCATCCCAACATCGACTTAGAAGGAAACACTTGCCTTAACATTCTTCGGGAAGACTGGAAACCTGTCTTAAATATAAACACATGTTATTTACGGATTGTATCACCTATTCACGGTATCTCTGATCGTAACACAAAATATTTCGAACCTAACCATGAGGACCCCTTGAATCAAGAAGCAGCTGATCTTTTGAGGGACAATCCAAAATTGTTTGGATTGAACGTGAGAAAATCGATCGAGGGAAACATATGGGTGTGTGGCGCCCATTTTCCTGGGTGCAAAACGGGTGACTTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

204

Amino Acids

23.45

Weight (kDa)

6.6

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	37 - 181	2.3e-30	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	572
AccI	GTMKAC	1 cut(s)	270
AciI	CCGC	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	573
AfiI	CCNNNNNNNGG	2 cut(s)	218, 425
AflIII	ACRYGT	1 cut(s)	395
AgsI	TTSAA	3 cut(s)	136, 481, 532
AjnI	CCWGG	1 cut(s)	583
AluBI	AGCT	2 cut(s)	56, 494
AluI	AGCT	2 cut(s)	56, 494
ApeKI	GCWGC	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	575
AspS9I	GGNCC	1 cut(s)	472
AsuHPI	GGTGA	2 cut(s)	408, 611
AsuII	TTCGAA	2 cut(s)	287, 456
AvaII	GGWCC	1 cut(s)	472
BanI	GGYRCC	1 cut(s)	572
BbsI	GAAGAC	3 cut(s)	104, 238, 372
BbvI	GCAGC	1 cut(s)	503
BccI	CCATC	2 cut(s)	181, 324
BciT130I	CCWGG	1 cut(s)	585
BfoI	RGCGCY	1 cut(s)	576
BglII	AGATCT	1 cut(s)	309
BisI	GCNGC	1 cut(s)	492
BlsI	GCNGC	1 cut(s)	493
Bme1390I	CCNGG	1 cut(s)	585
Bme18I	GGWCC	1 cut(s)	472
BmgT120I	GGNCC	1 cut(s)	472
BmiI	GGNNCC	2 cut(s)	474, 574
BmrFI	CCNGG	1 cut(s)	585
BpiI	GAAGAC	3 cut(s)	104, 238, 372
Bpu14I	TTCGAA	2 cut(s)	287, 456
Bsa29I	ATCGAT	1 cut(s)	545
BsaHI	GRCGYC	1 cut(s)	573
BsaJI	CCNNGG	1 cut(s)	584
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 425
Bse1I	ACTGG	1 cut(s)	374
BseBI	CCWGG	1 cut(s)	585
BseCI	ATCGAT	1 cut(s)	545
BseDI	CCNNGG	1 cut(s)	584
BseGI	GGATG	2 cut(s)	184, 316
BseLI	CCNNNNNNNGG	2 cut(s)	218, 425
BseNI	ACTGG	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	503
BsgI	GTGCAG	1 cut(s)	117
Bsh1285I	CGRYCG	1 cut(s)	549
BshNI	GGYRCC	1 cut(s)	572
BshVI	ATCGAT	1 cut(s)	545
BsiEI	CGRYCG	1 cut(s)	549
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	2 cut(s)	218, 425
BsmFI	GGGAC	1 cut(s)	521
BsmI	GAATGC	1 cut(s)	155
Bsp119I	TTCGAA	2 cut(s)	287, 456
Bsp143I	GATC	5 cut(s)	76, 309, 436, 496, 546
BspACI	CCGC	1 cut(s)	264
BspDI	ATCGAT	1 cut(s)	545
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	474, 574
BspT104I	TTCGAA	2 cut(s)	287, 456
BspT107I	GGYRCC	1 cut(s)	572
BsrI	ACTGG	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	584
BssMI	GATC	5 cut(s)	76, 309, 436, 496, 546
BssNI	GRCGYC	1 cut(s)	573
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	1 cut(s)	428
BstACI	GRCGYC	1 cut(s)	573
BstBI	TTCGAA	2 cut(s)	287, 456
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	1 cut(s)	331
BstF5I	GGATG	2 cut(s)	184, 316
BstH2I	RGCGCY	1 cut(s)	576
BstHHI	GCGC	1 cut(s)	575
BstKTI	GATC	5 cut(s)	79, 312, 439, 499, 549
BstMBI	GATC	5 cut(s)	76, 309, 436, 496, 546
BstMCI	CGRYCG	1 cut(s)	549
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	1 cut(s)	585
BstNSI	RCATGY	2 cut(s)	142, 399
BstSCI	CCNGG	1 cut(s)	583
BstV1I	GCAGC	1 cut(s)	503
BstV2I	GAAGAC	3 cut(s)	104, 238, 372
BstX2I	RGATCY	1 cut(s)	309
BstXI	CCANNNNNNTGG	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	309
Bsu15I	ATCGAT	1 cut(s)	545
BsuTUI	ATCGAT	1 cut(s)	545
BtsCI	GGATG	2 cut(s)	184, 316
Cac8I	GCNNGC	1 cut(s)	100
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	1 cut(s)	575
Cfr13I	GGNCC	1 cut(s)	472
ClaI	ATCGAT	1 cut(s)	545
CseI	GACGC	1 cut(s)	98
CviAII	CATG	5 cut(s)	13, 139, 278, 396, 467
CviJI	RGCY	3 cut(s)	56, 283, 494
CviKI_1	RGCY	3 cut(s)	56, 283, 494
DdeI	CTNAG	1 cut(s)	331
DinI	GGCGCC	1 cut(s)	574
DpnI	GATC	5 cut(s)	78, 311, 438, 498, 548
DpnII	GATC	5 cut(s)	76, 309, 436, 496, 546
DraI	TTTAAA	2 cut(s)	28, 256
Eco47I	GGWCC	1 cut(s)	472
EcoO109I	RGGNCCY	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	583
EgeI	GGCGCC	1 cut(s)	574
EheI	GGCGCC	1 cut(s)	574
FaeI	CATG	5 cut(s)	16, 142, 281, 399, 470
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	5 cut(s)	12, 138, 277, 395, 466
FauI	CCCGC	1 cut(s)	271
FauNDI	CATATG	1 cut(s)	560
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	492
FokI	GGATG	2 cut(s)	191, 303
Fsp4HI	GCNGC	1 cut(s)	492
GlaI	GCGC	1 cut(s)	574
GluI	GCNGC	1 cut(s)	492
HaeII	RGCGCY	1 cut(s)	576
HgaI	GACGC	1 cut(s)	98
HhaI	GCGC	1 cut(s)	575
Hin1I	GRCGYC	1 cut(s)	573
Hin1II	CATG	5 cut(s)	16, 142, 281, 399, 470
Hin6I	GCGC	1 cut(s)	573
HinP1I	GCGC	1 cut(s)	573
HinfI	GANTC	1 cut(s)	481
HphI	GGTGA	2 cut(s)	408, 611
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	1 cut(s)	436
Hpy188III	TCNNGA	3 cut(s)	278, 362, 485
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	3 cut(s)	283, 294, 329
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4IV	ACGT	2 cut(s)	251, 534
HpyCH4V	TGCA	4 cut(s)	98, 153, 300, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	331
HpySE526I	ACGT	2 cut(s)	251, 534
Hsp92I	GRCGYC	1 cut(s)	573
Hsp92II	CATG	5 cut(s)	16, 142, 281, 399, 470
HspAI	GCGC	1 cut(s)	573
KasI	GGCGCC	1 cut(s)	572
Kzo9I	GATC	5 cut(s)	76, 309, 436, 496, 546
LpnPI	CCDG	6 cut(s)	84, 156, 355, 390, 570, 597
Lsp1109I	GCAGC	1 cut(s)	503
MaeII	ACGT	2 cut(s)	251, 534
MaeIII	GTNAC	2 cut(s)	440, 599
MalI	GATC	5 cut(s)	78, 311, 438, 498, 548
MboI	GATC	5 cut(s)	76, 309, 436, 496, 546
MboII	GAAGA	5 cut(s)	104, 158, 238, 350, 377
MflI	RGATCY	1 cut(s)	309
MluCI	AATT	2 cut(s)	104, 518
Mly113I	GGCGCC	1 cut(s)	573
MnlI	CCTC	4 cut(s)	285, 463, 498, 544
MseI	TTAA	4 cut(s)	27, 255, 351, 383
MslI	CAYNNNNRTG	1 cut(s)	563
MspA1I	CMGCKG	2 cut(s)	56, 494
MspR9I	CCNGG	1 cut(s)	585
Mva1269I	GAATGC	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	585
MwoI	GCNNNNNNNGC	1 cut(s)	62
NarI	GGCGCC	1 cut(s)	573
NdeI	CATATG	1 cut(s)	560
NdeII	GATC	5 cut(s)	76, 309, 436, 496, 546
NlaIII	CATG	5 cut(s)	16, 142, 281, 399, 470
NlaIV	GGNNCC	2 cut(s)	474, 574
NmuCI	GTSAC	1 cut(s)	599
NspI	RCATGY	2 cut(s)	142, 399
NspV	TTCGAA	2 cut(s)	287, 456
PagI	TCATGA	1 cut(s)	277
PciI	ACATGT	1 cut(s)	395
PctI	GAATGC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	481
PkrI	GCNGC	1 cut(s)	493
Ple19I	CGATCG	1 cut(s)	549
PluTI	GGCGCC	1 cut(s)	576
PpuMI	RGGWCCY	1 cut(s)	472
PscI	ACATGT	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	2 cut(s)	474, 574
PspPI	GGNCC	1 cut(s)	472
PspPPI	RGGWCCY	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	309
PvuI	CGATCG	1 cut(s)	549
PvuII	CAGCTG	2 cut(s)	56, 494
RseI	CAYNNNNRTG	1 cut(s)	563
SaqAI	TTAA	4 cut(s)	27, 255, 351, 383
SatI	GCNGC	1 cut(s)	492
Sau3AI	GATC	5 cut(s)	76, 309, 436, 496, 546
Sau96I	GGNCC	1 cut(s)	472
ScrFI	CCNGG	1 cut(s)	585
SetI	ASST	9 cut(s)	58, 214, 254, 294, 379, 421, 463, 496, 537
SfoI	GGCGCC	1 cut(s)	574
SfuI	TTCGAA	2 cut(s)	287, 456
SinI	GGWCC	1 cut(s)	472
SmiMI	CAYNNNNRTG	1 cut(s)	563
Sse9I	AATT	2 cut(s)	104, 518
SsiI	CCGC	1 cut(s)	264
SspDI	GGCGCC	1 cut(s)	572
SspI	AATATT	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	583
TaaI	ACNGT	1 cut(s)	428
TaiI	ACGT	2 cut(s)	254, 537
TaqI	TCGA	5 cut(s)	287, 327, 456, 545, 549
TasI	AATT	2 cut(s)	104, 518
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	4 cut(s)	27, 255, 351, 383
Tru9I	TTAA	4 cut(s)	27, 255, 351, 383
TseFI	GTSAC	1 cut(s)	599
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	1 cut(s)	599
TspDTI	ATGAA	3 cut(s)	21, 104, 150
TspGWI	ACGGA	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	472
XceI	RCATGY	2 cut(s)	142, 399
XmiI	GTMKAC	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.