Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Reverse (-)

8764605 .. 8765688

Gene Structure 1084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g12190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAACTTTGAGGTTACAATTCGTCCAGATGAAGGATATTACTCGGGAGGTACGTTTTCGTTTACTTTCCAAGTGGCGCCTATCTATCCACATGAGGCACCAAAAGTCAAGTGCAAGACCAAGGTCTACCATCCTAATATTGACTTGGAAGGTAATGTCTGCCTCAACATCCTACGAGAAGATTGGAAACCTGTCCTCAACATAAACACTGTCATTTATGGATTGTATCATCTTTTCACGGAACCAAACTATGAAGATCCACTAAATCATGATGCAGCAGCGGTGTTGAGAGACAACCCGAAGATGTTTGAGTCTAATGTAAAACGTGCTATGGCTGGAGGTTATGTGGGGCAAACGATTTTCCCCCGGTGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

126

Amino Acids

14.3

Weight (kDa)

6.05

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	1 - 110	5.1e-38	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	76, 97
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	1 cut(s)	281
AclWI	GGATC	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	285
AlwI	GGATC	1 cut(s)	251
Ama87I	CYCGRG	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	275, 278
AspLEI	GCGC	1 cut(s)	79
AsuC2I	CCSGG	1 cut(s)	367
AvaI	CYCGRG	1 cut(s)	43
BanI	GGYRCC	2 cut(s)	76, 97
BbvI	GCAGC	2 cut(s)	287, 290
BccI	CCATC	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	285
BfoI	RGCGCY	1 cut(s)	80
BisI	GCNGC	2 cut(s)	276, 279
BlsI	GCNGC	2 cut(s)	277, 280
Bme1390I	CCNGG	1 cut(s)	367
BmeT110I	CYCGRG	1 cut(s)	43
BmiI	GGNNCC	3 cut(s)	78, 99, 243
BmrFI	CCNGG	1 cut(s)	367
BmsI	GCATC	1 cut(s)	262
BoxI	GACNNNNGTC	1 cut(s)	122
BpmI	CTGGAG	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	367
BsaHI	GRCGYC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	120, 365
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	120, 365
BseGI	GGATG	2 cut(s)	130, 168
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	287, 290
BshNI	GGYRCC	2 cut(s)	76, 97
BsiHKCI	CYCGRG	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	367
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	285
BsoBI	CYCGRG	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	1 cut(s)	281
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	3 cut(s)	78, 99, 243
BspPI	GGATC	1 cut(s)	251
BspT107I	GGYRCC	2 cut(s)	76, 97
BssECI	CCNNGG	2 cut(s)	120, 365
BssMI	GATC	1 cut(s)	256
BssNI	GRCGYC	1 cut(s)	77
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	211
BstACI	GRCGYC	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	130, 168
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	376
BstPAI	GACNNNNGTC	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	365
BstV1I	GCAGC	2 cut(s)	287, 290
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	130, 168
BtsIMutI	CAGTG	1 cut(s)	207
CciI	TCATGA	1 cut(s)	268
CfoI	GCGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	3 cut(s)	92, 269, 373
CviJI	RGCY	1 cut(s)	335
CviKI_1	RGCY	1 cut(s)	335
CviQI	GTAC	1 cut(s)	51
DinI	GGCGCC	1 cut(s)	78
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	120
EgeI	GGCGCC	1 cut(s)	78
EheI	GGCGCC	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	3 cut(s)	95, 272, 376
FaiI	YATR	8 cut(s)	93, 203, 219, 252, 270, 332, 345, 374
FatI	CATG	3 cut(s)	91, 268, 372
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	276, 279
FokI	GGATG	2 cut(s)	117, 155
Fsp4HI	GCNGC	2 cut(s)	276, 279
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	2 cut(s)	276, 279
GsuI	CTGGAG	1 cut(s)	357
HaeII	RGCGCY	1 cut(s)	80
HapII	CCGG	1 cut(s)	367
HhaI	GCGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	3 cut(s)	95, 272, 376
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	1 cut(s)	311
HpaII	CCGG	1 cut(s)	367
Hpy166II	GTNNAC	2 cut(s)	63, 127
Hpy188III	TCNNGA	3 cut(s)	26, 45, 269
Hpy8I	GTNNAC	2 cut(s)	63, 127
HpyAV	CCTTC	2 cut(s)	26, 143
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	2 cut(s)	53, 325
HpyCH4V	TGCA	3 cut(s)	114, 275, 372
HpySE526I	ACGT	2 cut(s)	53, 325
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	3 cut(s)	95, 272, 376
HspAI	GCGC	1 cut(s)	77
KasI	GGCGCC	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	256
LpnPI	CCDG	3 cut(s)	39, 204, 321
Lsp1109I	GCAGC	2 cut(s)	287, 290
LweI	GCATC	1 cut(s)	262
MaeII	ACGT	2 cut(s)	53, 325
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	3 cut(s)	191, 266, 313
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	1 cut(s)	18
Mly113I	GGCGCC	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	320
MnlI	CCTC	6 cut(s)	4, 41, 88, 173, 206, 332
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	1 cut(s)	367
NarI	GGCGCC	1 cut(s)	77
NciI	CCSGG	1 cut(s)	367
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	3 cut(s)	95, 272, 376
NlaIV	GGNNCC	3 cut(s)	78, 99, 243
NspI	RCATGY	1 cut(s)	376
PagI	TCATGA	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	277, 280
PleI	GAGTC	1 cut(s)	319
PluTI	GGCGCC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	319
PshAI	GACNNNNGTC	1 cut(s)	122
PspN4I	GGNNCC	3 cut(s)	78, 99, 243
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
SatI	GCNGC	2 cut(s)	276, 279
Sau3AI	GATC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	367
SetI	ASST	8 cut(s)	15, 52, 56, 126, 154, 193, 328, 343
SfaNI	GCATC	1 cut(s)	262
SfoI	GGCGCC	1 cut(s)	78
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	1 cut(s)	281
SspDI	GGCGCC	1 cut(s)	76
SspI	AATATT	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	2 cut(s)	56, 328
TasI	AATT	1 cut(s)	18
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	2 cut(s)	275, 278
TspDTI	ATGAA	3 cut(s)	17, 45, 267
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	214
XceI	RCATGY	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.