Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Reverse (-)

13385279 .. 13388503

Gene Structure 3225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G102500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATTAAGCTATTTAAAGTGAAGGAAAGGCAGAGGGAGATTGCAGCAAATGCCAATGGAAAACCACCTGTTAAGAAGCAAAGTGCAGGAGAATTACGTCTTCACAGAGATATCAGTGAGCTGAACCTACAAAAAACATGTACCATATCATTTCCCAATGGCAAAGACGACTTGATGAACTTTGAGGTTACTGTTTGCCCTGATGAAGGATATTATTTAGGTGGCACATTTATGTTCACGTTTCAAGTTTCTCCTGTCTACCCTCATGAGGCGCCAAAGGTCAAGTGCAAGACAAAGGTCTACCATCCTAATATTGACTTGGAAGGAAATGTCTGCCTCAACATTCTAAGAGAAGATTGGAAACCTGTTTTGAATATCAACACTATAATATATGGACTATTTCATCTTTTTACGCAACCCAATTATGAAGATCCCCTTAATCATGATGCAGCAGCCGTTCTAAGGGATAACCCGAAGATGTTTGAGTCCAACGTGAGAAGGGCGATGGCTGGTGGGTATGTGGGGCAAACCTTATTCCCACGCTGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

184

Amino Acids

20.89

Weight (kDa)

8.55

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	271
AccI	GTMKAC	2 cut(s)	258, 300
AclWI	GGATC	1 cut(s)	425
AcyI	GRCGYC	1 cut(s)	272
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	3 cut(s)	206, 268, 462
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	245, 373
AluBI	AGCT	2 cut(s)	10, 121
AluI	AGCT	2 cut(s)	10, 121
AlwI	GGATC	1 cut(s)	425
ApeKI	GCWGC	4 cut(s)	44, 449, 452, 543
AspLEI	GCGC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	92
BbvI	GCAGC	4 cut(s)	56, 461, 464, 530
BccI	CCATC	2 cut(s)	312, 499
BceAI	ACGGC	1 cut(s)	440
BfoI	RGCGCY	1 cut(s)	275
BisI	GCNGC	4 cut(s)	45, 450, 453, 544
BlsI	GCNGC	4 cut(s)	46, 451, 454, 545
BmiI	GGNNCC	1 cut(s)	273
BmsI	GCATC	1 cut(s)	436
BoxI	GACNNNNGTC	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 268, 462
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	3 cut(s)	206, 268, 462
BseXI	GCAGC	4 cut(s)	56, 461, 464, 530
BsgI	GTGCAG	1 cut(s)	105
BshNI	GGYRCC	1 cut(s)	271
BslI	CCNNNNNNNGG	3 cut(s)	206, 268, 462
Bsp143I	GATC	1 cut(s)	430
BspHI	TCATGA	2 cut(s)	265, 442
BspLI	GGNNCC	1 cut(s)	273
BspPI	GGATC	1 cut(s)	425
BspT107I	GGYRCC	1 cut(s)	271
BssMI	GATC	1 cut(s)	430
BssNI	GRCGYC	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	193
BstACI	GRCGYC	1 cut(s)	272
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstDEI	CTNAG	2 cut(s)	347, 461
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	304
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	1 cut(s)	433
BstMBI	GATC	1 cut(s)	430
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNSI	RCATGY	2 cut(s)	141, 550
BstPAI	GACNNNNGTC	1 cut(s)	296
BstV1I	GCAGC	4 cut(s)	56, 461, 464, 530
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BtgZI	GCGATG	1 cut(s)	518
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	121
CciI	TCATGA	2 cut(s)	265, 442
CfoI	GCGC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	4 cut(s)	138, 266, 443, 547
CviJI	RGCY	4 cut(s)	10, 121, 455, 509
CviKI_1	RGCY	4 cut(s)	10, 121, 455, 509
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	2 cut(s)	347, 461
DinI	GGCGCC	1 cut(s)	273
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
DraI	TTTAAA	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	112
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoRV	GATATC	1 cut(s)	112
EgeI	GGCGCC	1 cut(s)	273
EheI	GGCGCC	1 cut(s)	273
FaeI	CATG	4 cut(s)	141, 269, 446, 550
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	4 cut(s)	137, 265, 442, 546
FblI	GTMKAC	2 cut(s)	258, 300
Fnu4HI	GCNGC	4 cut(s)	45, 450, 453, 544
FokI	GGATG	1 cut(s)	291
Fsp4HI	GCNGC	4 cut(s)	45, 450, 453, 544
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	4 cut(s)	45, 450, 453, 544
HaeII	RGCGCY	1 cut(s)	275
HhaI	GCGC	1 cut(s)	274
Hin1I	GRCGYC	1 cut(s)	272
Hin1II	CATG	4 cut(s)	141, 269, 446, 550
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HinfI	GANTC	1 cut(s)	485
Hpy166II	GTNNAC	3 cut(s)	237, 259, 301
Hpy188III	TCNNGA	2 cut(s)	266, 443
Hpy8I	GTNNAC	3 cut(s)	237, 259, 301
HpyAV	CCTTC	4 cut(s)	16, 200, 317, 492
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	3 cut(s)	97, 239, 492
HpyCH4V	TGCA	5 cut(s)	44, 86, 288, 449, 546
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	2 cut(s)	347, 461
HpySE526I	ACGT	3 cut(s)	97, 239, 492
Hsp92I	GRCGYC	1 cut(s)	272
Hsp92II	CATG	4 cut(s)	141, 269, 446, 550
HspAI	GCGC	1 cut(s)	272
KasI	GGCGCC	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	430
LpnPI	CCDG	6 cut(s)	72, 81, 213, 267, 378, 495
Lsp1109I	GCAGC	4 cut(s)	56, 461, 464, 530
LweI	GCATC	1 cut(s)	436
MaeII	ACGT	3 cut(s)	97, 239, 492
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	1 cut(s)	432
MboI	GATC	1 cut(s)	430
MboII	GAAGA	4 cut(s)	92, 365, 440, 487
MflI	RGATCY	1 cut(s)	430
MluCI	AATT	2 cut(s)	92, 421
Mly113I	GGCGCC	1 cut(s)	272
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	5 cut(s)	27, 178, 262, 273, 347
MseI	TTAA	4 cut(s)	6, 15, 72, 438
MslI	CAYNNNNRTG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	50
NarI	GGCGCC	1 cut(s)	272
NdeII	GATC	1 cut(s)	430
NlaIII	CATG	4 cut(s)	141, 269, 446, 550
NlaIV	GGNNCC	1 cut(s)	273
NspI	RCATGY	2 cut(s)	141, 550
PagI	TCATGA	2 cut(s)	265, 442
PciI	ACATGT	1 cut(s)	137
PkrI	GCNGC	4 cut(s)	46, 451, 454, 545
PleI	GAGTC	1 cut(s)	493
PluTI	GGCGCC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	493
PscI	ACATGT	1 cut(s)	137
PshAI	GACNNNNGTC	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	430
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	4 cut(s)	6, 15, 72, 438
SatI	GCNGC	4 cut(s)	45, 450, 453, 544
Sau3AI	GATC	1 cut(s)	430
SchI	GAGTC	1 cut(s)	494
SfaNI	GCATC	1 cut(s)	436
SfoI	GGCGCC	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	92, 421
SspDI	GGCGCC	1 cut(s)	271
SspI	AATATT	1 cut(s)	313
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	3 cut(s)	100, 242, 495
TasI	AATT	2 cut(s)	92, 421
Tru1I	TTAA	4 cut(s)	6, 15, 72, 438
Tru9I	TTAA	4 cut(s)	6, 15, 72, 438
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	4 cut(s)	44, 449, 452, 543
TspDTI	ATGAA	4 cut(s)	191, 219, 392, 441
TspRI	CASTG	1 cut(s)	121
XagI	CCTNNNNNAGG	1 cut(s)	204
XceI	RCATGY	2 cut(s)	141, 550
XmiI	GTMKAC	2 cut(s)	258, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.