Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Reverse (-)

12784208 .. 12787146

Gene Structure 2939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1154200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTCTGCAAGAGATATGATTAGGCTATTCAAAGAAAAGGAAAAGCTGAGAGCACAAAACGCCAATGGAGCCTCACCAGTTACGAAGCAATCTGCTGGAAAATTGCGTCTTAATAAAGATATGTCTGAGCTGAATTTACCAAAATCCTGTAGCATTCATTATCCTCATGGCAAGGATGAGCTGATGAACTTTGAGGTTACAATTCGTCCGGATGAAGGATATTACAAAGGCGGTGTTTTTATGTTTACGTTCCAAGTTGCCACTATCTATCCACATGAGGCTCCAAAAGTCAAGTGTAAGACCAAGGTCTACCATCCGAATATTGACTTGGAAGGAAATGTCTGCCTCAACATCCTACGAGAAGATTGGAAACCTGTCCTCAATATAAACACTATCATATATGGATTATATCACCTCTTCACGGAACCAAATTATGAAGATCCACTAAATCATGATGCAGCTGCAGTGTTAAGAGACAACCCGAAGATGTTTGAAGCTAATGTAAGAAGGGCTATGGCCGGTGGGTATGTGGGGCAAACCTTATTCCCCCGGTGCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

187

Amino Acids

21.25

Weight (kDa)

8.81

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	36 - 171	8.2e-41	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	309
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	1 cut(s)	231
AclWI	GGATC	1 cut(s)	434
AcoI	YGGCCR	1 cut(s)	516
AcsI	RAATTY	1 cut(s)	133
AfiI	CCNNNNNNNGG	2 cut(s)	215, 421
AgsI	TTSAA	2 cut(s)	31, 494
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	5 cut(s)	46, 130, 181, 461, 497
AluI	AGCT	5 cut(s)	46, 130, 181, 461, 497
Alw21I	GWGCWC	2 cut(s)	55, 557
Alw26I	GTCTC	1 cut(s)	468
Alw44I	GTGCAC	1 cut(s)	553
AlwI	GGATC	1 cut(s)	434
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	1 cut(s)	516
ApaLI	GTGCAC	1 cut(s)	553
ApeKI	GCWGC	2 cut(s)	458, 461
ApoI	RAATTY	1 cut(s)	133
AsuC2I	CCSGG	1 cut(s)	550
AsuHPI	GGTGA	2 cut(s)	66, 404
BaeGI	GKGCMC	1 cut(s)	557
Bbv12I	GWGCWC	2 cut(s)	55, 557
BbvI	GCAGC	2 cut(s)	448, 470
BccI	CCATC	1 cut(s)	321
BcnI	CCSGG	1 cut(s)	550
BcoDI	GTCTC	1 cut(s)	468
BfmI	CTRYAG	2 cut(s)	148, 462
BisI	GCNGC	2 cut(s)	459, 462
BlsI	GCNGC	2 cut(s)	460, 463
Bme1390I	CCNGG	1 cut(s)	550
BmiI	GGNNCC	3 cut(s)	70, 282, 426
BmrFI	CCNGG	1 cut(s)	550
BmsI	GCATC	1 cut(s)	445
BoxI	GACNNNNGTC	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	550
BsaJI	CCNNGG	2 cut(s)	303, 548
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 421
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	1 cut(s)	77
BseAI	TCCGGA	1 cut(s)	208
BseDI	CCNNGG	2 cut(s)	303, 548
BseGI	GGATG	4 cut(s)	181, 217, 313, 351
BseLI	CCNNNNNNNGG	2 cut(s)	215, 421
BseMII	CTCAG	2 cut(s)	38, 117
BseNI	ACTGG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	557
BseXI	GCAGC	2 cut(s)	448, 470
BshFI	GGCC	1 cut(s)	518
BsiHKAI	GWGCWC	2 cut(s)	55, 557
BsiSI	CCGG	3 cut(s)	209, 519, 550
BslI	CCNNNNNNNGG	2 cut(s)	215, 421
BsmAI	GTCTC	1 cut(s)	468
BsmI	GAATGC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	518
Bsp1286I	GDGCHC	2 cut(s)	55, 557
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	439
BspACI	CCGC	1 cut(s)	231
BspANI	GGCC	1 cut(s)	518
BspCNI	CTCAG	2 cut(s)	39, 118
BspEI	TCCGGA	1 cut(s)	208
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	3 cut(s)	70, 282, 426
BspMAI	CTGCAG	1 cut(s)	466
BspPI	GGATC	1 cut(s)	434
BsrFI	RCCGGY	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	77
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	2 cut(s)	303, 548
BssMI	GATC	1 cut(s)	439
BssT1I	CCWWGG	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	422
BstDEI	CTNAG	2 cut(s)	47, 126
BstF5I	GGATG	4 cut(s)	181, 217, 313, 351
BstKTI	GATC	1 cut(s)	442
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	1 cut(s)	439
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 68
BstPAI	GACNNNNGTC	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	548
BstSFI	CTRYAG	2 cut(s)	148, 462
BstSLI	GKGCMC	1 cut(s)	557
BstV1I	GCAGC	2 cut(s)	448, 470
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BsuRI	GGCC	1 cut(s)	518
BtsCI	GGATG	4 cut(s)	181, 217, 313, 351
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	1 cut(s)	471
CciI	TCATGA	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	518
CseI	GACGC	1 cut(s)	95
CviAII	CATG	3 cut(s)	167, 275, 452
DdeI	CTNAG	2 cut(s)	47, 126
DpnI	GATC	1 cut(s)	441
DpnII	GATC	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	516
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	3 cut(s)	170, 278, 455
FatI	CATG	3 cut(s)	166, 274, 451
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	459, 462
FokI	GGATG	4 cut(s)	188, 224, 300, 338
Fsp4HI	GCNGC	2 cut(s)	459, 462
GluI	GCNGC	2 cut(s)	459, 462
HaeIII	GGCC	1 cut(s)	518
HapII	CCGG	3 cut(s)	209, 519, 550
HgaI	GACGC	1 cut(s)	95
Hin1II	CATG	3 cut(s)	170, 278, 455
HpaII	CCGG	3 cut(s)	209, 519, 550
HphI	GGTGA	2 cut(s)	66, 404
Hpy166II	GTNNAC	3 cut(s)	246, 310, 555
Hpy188I	TCNGA	2 cut(s)	127, 318
Hpy188III	TCNNGA	2 cut(s)	209, 452
Hpy8I	GTNNAC	3 cut(s)	246, 310, 555
HpyAV	CCTTC	3 cut(s)	209, 326, 501
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	4 cut(s)	8, 458, 464, 555
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 68
HpyF3I	CTNAG	2 cut(s)	47, 126
HpySE526I	ACGT	1 cut(s)	248
Hsp92II	CATG	3 cut(s)	170, 278, 455
Kpn2I	TCCGGA	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	439
LmnI	GCTCC	2 cut(s)	68, 286
LpnPI	CCDG	6 cut(s)	81, 90, 160, 222, 387, 532
Lsp1109I	GCAGC	2 cut(s)	448, 470
LweI	GCATC	1 cut(s)	445
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	2 cut(s)	79, 196
MalI	GATC	1 cut(s)	441
MboI	GATC	1 cut(s)	439
MboII	GAAGA	4 cut(s)	374, 409, 449, 496
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	2 cut(s)	55, 557
MluCI	AATT	4 cut(s)	101, 133, 201, 430
MnlI	CCTC	7 cut(s)	82, 174, 187, 271, 356, 389, 425
MroI	TCCGGA	1 cut(s)	208
MseI	TTAA	2 cut(s)	111, 470
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	3 cut(s)	209, 519, 550
MspR9I	CCNGG	1 cut(s)	550
Mva1269I	GAATGC	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	59, 68
NciI	CCSGG	1 cut(s)	550
NdeII	GATC	1 cut(s)	439
NlaIII	CATG	3 cut(s)	170, 278, 455
NlaIV	GGNNCC	3 cut(s)	70, 282, 426
PagI	TCATGA	1 cut(s)	451
PctI	GAATGC	1 cut(s)	153
PkrI	GCNGC	2 cut(s)	460, 463
PshAI	GACNNNNGTC	1 cut(s)	305
PspN4I	GGNNCC	3 cut(s)	70, 282, 426
PstI	CTGCAG	1 cut(s)	466
PsuI	RGATCY	1 cut(s)	439
PvuII	CAGCTG	1 cut(s)	461
SaqAI	TTAA	2 cut(s)	111, 470
SatI	GCNGC	2 cut(s)	459, 462
Sau3AI	GATC	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	550
SduI	GDGCHC	2 cut(s)	55, 557
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	2 cut(s)	148, 462
Sse9I	AATT	4 cut(s)	101, 133, 201, 430
SsiI	CCGC	1 cut(s)	231
SspI	AATATT	1 cut(s)	322
StyD4I	CCNGG	1 cut(s)	548
StyI	CCWWGG	1 cut(s)	303
TaiI	ACGT	1 cut(s)	251
TasI	AATT	4 cut(s)	101, 133, 201, 430
Tru1I	TTAA	2 cut(s)	111, 470
Tru9I	TTAA	2 cut(s)	111, 470
TscAI	CASTG	1 cut(s)	471
TseI	GCWGC	2 cut(s)	458, 461
TspDTI	ATGAA	4 cut(s)	146, 200, 228, 450
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	1 cut(s)	471
VneI	GTGCAC	1 cut(s)	553
XapI	RAATTY	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.